Stats for family Cyprinidae

Species in family:
Abramis brama
Carassius auratus
Ctenopharyngodon idella
Cyprinella lutrensis
Cyprinella spiloptera
Cyprinus carpio
Danio rerio
Gila robusta
Gobio gobio
Labeo rohita
Leucaspius delineatus
Notemigonus crysoleucas
Notropis stramineus
Oreoleuciscus potanini
Pelecus cultratus
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Stats for total mtDNA (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 39.9 - 46.5% 53.5 - 60.1% 3969 - 4623 2555 - 3213 4042 - 5093 4427 - 5406 2.0 - 47.0
Median 43.6% 56.4% 4439 2907 4446 4869 8.0
Average ± stdev 43.8 ± 1.6% 56.2 ± 1.6% 4423 ± 132 2883 ± 200 4458 ± 209 4922 ± 286 13.7 ± 13.8
Coefficient of variation 0.04 0.03 0.03 0.07 0.05 0.06 1.01
Pearson correlation
coefficient with log10MLS		 -0.30 0.30 0.07 -0.44 -0.33 0.51 -
Pearson p-value
(two tailed)		 2.07E-01 2.06E-01 7.62E-01 5.64E-02 1.68E-01 2.61E-02 -
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Stats for total protein-coding genes (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 39.3 - 46.9% 53.1 - 60.7% 2800 - 3359 1578 - 2090 2821 - 3387 2835 - 3633 2.0 - 47.0
Median 44.0% 56.0% 3175 1837 3188 3195 8.0
Average ± stdev 43.9 ± 1.8% 56.1 ± 1.8% 3177 ± 114 1830 ± 151 3174 ± 136 3218 ± 240 13.7 ± 13.8
Coefficient of variation 0.04 0.03 0.04 0.08 0.04 0.07 1.01
Pearson correlation
coefficient with log10MLS		 -0.25 0.25 0.15 -0.45 -0.52 0.50 -
Pearson p-value
(two tailed)		 3.00E-01 3.00E-01 5.49E-01 5.26E-02 2.40E-02 2.92E-02 -
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Stats for D-loop (group size: 5 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
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Stats for total tRNA-coding genes (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 42.8 - 46.5% 53.5 - 57.2% 357 - 457 304 - 372 385 - 496 450 - 536 2.0 - 47.0
Median 44.5% 55.5% 377 321 395 469 8.0
Average ± stdev 44.6 ± 0.9% 55.4 ± 0.9% 380 ± 19 322 ± 15 400 ± 23 472 ± 18 13.7 ± 13.8
Coefficient of variation 0.02 0.02 0.05 0.05 0.06 0.04 1.01
Pearson correlation
coefficient with log10MLS		 -0.29 0.29 -0.04 -0.24 0.03 0.16 -
Pearson p-value
(two tailed)		 2.31E-01 2.22E-01 8.74E-01 3.23E-01 8.92E-01 5.21E-01 -
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Stats for total rRNA-coding genes (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 42.7 - 48.0% 52.0 - 57.3% 596 - 661 530 - 607 515 - 564 840 - 958 2.0 - 47.0
Median 45.8% 54.2% 642 576 542 882 8.0
Average ± stdev 46.0 ± 1.2% 54.0 ± 1.2% 639 ± 15 575 ± 24 542 ± 15 885 ± 32 13.7 ± 13.8
Coefficient of variation 0.03 0.02 0.02 0.04 0.03 0.04 1.01
Pearson correlation
coefficient with log10MLS		 -0.31 0.31 0.02 -0.39 -0.31 0.44 -
Pearson p-value
(two tailed)		 1.97E-01 1.97E-01 9.47E-01 1.02E-01 1.89E-01 6.06E-02 -
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Stats for ATP6 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 38.6 - 44.2% 55.8 - 61.4% 170 - 203 83 - 111 184 - 227 172 - 215 2.0 - 47.0
Median 41.5% 58.5% 189 94 207 192 8.0
Average ± stdev 41.4 ± 1.8% 58.6 ± 1.8% 187 ± 8 96 ± 7 206 ± 10 194 ± 12 13.7 ± 13.8
Coefficient of variation 0.04 0.03 0.04 0.08 0.05 0.06 1.01
Pearson correlation
coefficient with log10MLS		 -0.24 0.24 -0.28 -0.09 -0.32 0.50 -
Pearson p-value
(two tailed)		 3.17E-01 3.17E-01 2.50E-01 7.28E-01 1.88E-01 3.01E-02 -
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Stats for ATP8 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 33.3 - 42.4% 57.6 - 66.7% 39 - 52 15 - 26 36 - 51 51 - 62 2.0 - 47.0
Median 40.1% 59.9% 46 19 41 58 8.0
Average ± stdev 39.5 ± 2.3% 60.5 ± 2.3% 45 ± 3 19 ± 2 42 ± 4 57 ± 2 13.7 ± 13.8
Coefficient of variation 0.06 0.04 0.08 0.14 0.10 0.05 1.01
Pearson correlation
coefficient with log10MLS		 -0.15 0.15 -0.35 0.27 -0.00 0.26 -
Pearson p-value
(two tailed)		 5.33E-01 5.33E-01 1.41E-01 2.71E-01 9.85E-01 2.79E-01 -
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Stats for COX1 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 39.8 - 45.0% 55.0 - 60.2% 347 - 416 264 - 306 440 - 497 376 - 436 2.0 - 47.0
Median 43.7% 56.3% 392 285 472 401 8.0
Average ± stdev 43.6 ± 1.2% 56.4 ± 1.2% 392 ± 13 283 ± 12 469 ± 14 405 ± 18 13.7 ± 13.8
Coefficient of variation 0.03 0.02 0.03 0.04 0.03 0.05 1.01
Pearson correlation
coefficient with log10MLS		 -0.09 0.09 0.23 -0.39 -0.46 0.43 -
Pearson p-value
(two tailed)		 7.15E-01 7.15E-01 3.38E-01 1.01E-01 4.87E-02 6.47E-02 -
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Stats for COX2 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 39.9 - 44.9% 55.1 - 60.1% 164 - 195 107 - 127 169 - 205 192 - 221 2.0 - 47.0
Median 42.3% 57.7% 176 115 193 205 8.0
Average ± stdev 42.3 ± 1.3% 57.7 ± 1.3% 176 ± 7 116 ± 5 192 ± 8 206 ± 7 13.7 ± 13.8
Coefficient of variation 0.03 0.02 0.04 0.05 0.04 0.04 1.01
Pearson correlation
coefficient with log10MLS		 0.06 -0.06 0.22 -0.21 -0.38 0.34 -
Pearson p-value
(two tailed)		 7.93E-01 7.93E-01 3.70E-01 3.95E-01 1.08E-01 1.48E-01 -
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Stats for COX3 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 42.4 - 47.7% 52.3 - 57.6% 194 - 232 124 - 160 200 - 240 185 - 229 2.0 - 47.0
Median 45.5% 54.5% 215 139 226 201 8.0
Average ± stdev 45.3 ± 1.2% 54.7 ± 1.2% 215 ± 7 140 ± 10 224 ± 8 204 ± 13 13.7 ± 13.8
Coefficient of variation 0.03 0.02 0.04 0.07 0.04 0.06 1.01
Pearson correlation
coefficient with log10MLS		 -0.28 0.28 0.29 -0.48 -0.42 0.50 -
Pearson p-value
(two tailed)		 2.40E-01 2.40E-01 2.28E-01 3.86E-02 7.22E-02 3.00E-02 -
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Stats for CYTB (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 39.1 - 48.2% 51.8 - 60.9% 277 - 342 151 - 215 299 - 365 266 - 350 2.0 - 47.0
Median 42.8% 57.2% 316 180 334 306 8.0
Average ± stdev 43.8 ± 2.3% 56.2 ± 2.3% 318 ± 16 180 ± 17 333 ± 16 308 ± 24 13.7 ± 13.8
Coefficient of variation 0.05 0.04 0.05 0.09 0.05 0.08 1.01
Pearson correlation
coefficient with log10MLS		 -0.24 0.24 0.13 -0.49 -0.41 0.52 -
Pearson p-value
(two tailed)		 3.24E-01 3.24E-01 5.85E-01 3.34E-02 7.88E-02 2.36E-02 -
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Stats for ND1 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 40.0 - 50.3% 49.7 - 60.0% 242 - 304 137 - 201 236 - 302 204 - 304 2.0 - 47.0
Median 45.1% 54.9% 281 167 279 252 8.0
Average ± stdev 45.7 ± 2.9% 54.3 ± 2.9% 277 ± 15 168 ± 19 275 ± 15 253 ± 32 13.7 ± 13.8
Coefficient of variation 0.06 0.05 0.06 0.12 0.06 0.13 1.01
Pearson correlation
coefficient with log10MLS		 -0.29 0.29 0.07 -0.46 -0.53 0.50 -
Pearson p-value
(two tailed)		 2.33E-01 2.33E-01 7.64E-01 4.75E-02 1.97E-02 2.76E-02 -
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Stats for ND2 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 40.4 - 50.8% 49.2 - 59.6% 277 - 350 120 - 198 210 - 294 239 - 366 2.0 - 47.0
Median 46.8% 53.2% 330 157 270 293 8.0
Average ± stdev 46.6 ± 2.8% 53.4 ± 2.8% 326 ± 15 161 ± 21 263 ± 20 295 ± 37 13.7 ± 13.8
Coefficient of variation 0.06 0.05 0.05 0.13 0.08 0.13 1.01
Pearson correlation
coefficient with log10MLS		 -0.30 0.30 0.08 -0.45 -0.49 0.50 -
Pearson p-value
(two tailed)		 2.17E-01 2.17E-01 7.42E-01 5.52E-02 3.15E-02 2.88E-02 -
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Stats for ND3 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 38.2 - 48.7% 51.3 - 61.8% 78 - 105 49 - 67 93 - 115 80 - 104 2.0 - 47.0
Median 44.1% 55.9% 96 57 107 91 8.0
Average ± stdev 43.7 ± 2.4% 56.3 ± 2.4% 96 ± 6 56 ± 5 105 ± 6 91 ± 7 13.7 ± 13.8
Coefficient of variation 0.06 0.04 0.06 0.10 0.06 0.08 1.01
Pearson correlation
coefficient with log10MLS		 0.02 -0.02 0.31 -0.33 -0.37 0.31 -
Pearson p-value
(two tailed)		 9.50E-01 9.50E-01 1.93E-01 1.71E-01 1.18E-01 1.96E-01 -
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Stats for ND4 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 38.4 - 46.8% 53.2 - 61.6% 333 - 416 186 - 248 354 - 420 330 - 445 2.0 - 47.0
Median 43.4% 56.6% 386 215 391 385 8.0
Average ± stdev 43.3 ± 2.1% 56.7 ± 2.1% 382 ± 16 215 ± 19 392 ± 17 390 ± 34 13.7 ± 13.8
Coefficient of variation 0.05 0.04 0.04 0.09 0.05 0.09 1.01
Pearson correlation
coefficient with log10MLS		 -0.31 0.31 0.01 -0.46 -0.45 0.48 -
Pearson p-value
(two tailed)		 1.95E-01 1.95E-01 9.54E-01 4.82E-02 5.12E-02 3.72E-02 -
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Stats for ND4L (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 40.4 - 48.8% 51.2 - 59.6% 79 - 94 41 - 54 79 - 90 68 - 89 2.0 - 47.0
Median 46.5% 53.5% 89 50 84 75 8.0
Average ± stdev 46.3 ± 1.9% 53.7 ± 1.9% 88 ± 3 49 ± 3 84 ± 3 74 ± 4 13.7 ± 13.8
Coefficient of variation 0.04 0.04 0.04 0.06 0.04 0.06 1.01
Pearson correlation
coefficient with log10MLS		 0.07 -0.07 0.11 -0.00 -0.47 0.23 -
Pearson p-value
(two tailed)		 7.90E-01 7.90E-01 6.44E-01 9.90E-01 4.48E-02 3.48E-01 -
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Stats for ND5 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 37.2 - 46.2% 53.8 - 62.8% 438 - 543 218 - 325 436 - 550 481 - 627 2.0 - 47.0
Median 42.4% 57.6% 514 275 510 540 8.0
Average ± stdev 42.5 ± 2.1% 57.5 ± 2.1% 508 ± 23 270 ± 29 507 ± 26 545 ± 41 13.7 ± 13.8
Coefficient of variation 0.05 0.04 0.05 0.11 0.05 0.08 1.01
Pearson correlation
coefficient with log10MLS		 -0.29 0.29 0.21 -0.56 -0.43 0.52 -
Pearson p-value
(two tailed)		 2.27E-01 2.27E-01 3.84E-01 1.21E-02 6.73E-02 2.32E-02 -
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Stats for ND6 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 40.3 - 51.7% 48.3 - 59.7% 145 - 173 59 - 98 63 - 100 161 - 226 2.0 - 47.0
Median 45.8% 54.2% 165 75 81 202 8.0
Average ± stdev 45.8 ± 2.8% 54.2 ± 2.8% 163 ± 7 75 ± 10 82 ± 9 199 ± 17 13.7 ± 13.8
Coefficient of variation 0.06 0.05 0.04 0.15 0.12 0.09 1.01
Pearson correlation
coefficient with log10MLS		 -0.13 0.13 0.15 -0.28 -0.53 0.39 -
Pearson p-value
(two tailed)		 5.86E-01 5.86E-01 5.52E-01 2.53E-01 2.09E-02 1.03E-01 -
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Stats for 12S rRNA gene (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 45.6 - 51.2% 48.8 - 54.4% 232 - 266 202 - 234 180 - 201 282 - 324 2.0 - 47.0
Median 49.4% 50.6% 253 223 188 293 8.0
Average ± stdev 49.4 ± 1.2% 50.6 ± 1.2% 252 ± 7 219 ± 9 188 ± 6 295 ± 9 13.7 ± 13.8
Coefficient of variation 0.02 0.02 0.03 0.04 0.03 0.03 1.01
Pearson correlation
coefficient with log10MLS		 -0.10 0.10 0.10 -0.25 -0.26 0.23 -
Pearson p-value
(two tailed)		 6.88E-01 6.88E-01 6.69E-01 2.99E-01 2.87E-01 3.49E-01 -
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Stats for 16S rRNA gene (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 41.1 - 46.7% 53.3 - 58.9% 364 - 403 328 - 382 331 - 369 545 - 634 2.0 - 47.0
Median 43.8% 56.2% 387 356 357 589 8.0
Average ± stdev 44.0 ± 1.3% 56.0 ± 1.3% 387 ± 9 355 ± 15 354 ± 10 589 ± 24 13.7 ± 13.8
Coefficient of variation 0.03 0.02 0.03 0.04 0.03 0.04 1.01
Pearson correlation
coefficient with log10MLS		 -0.39 0.39 -0.05 -0.44 -0.30 0.49 -
Pearson p-value
(two tailed)		 1.01E-01 1.01E-01 8.33E-01 5.72E-02 2.12E-01 3.29E-02 -
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.