Viewing data for Gila robusta


Scientific name Gila robusta
Common name Roundtail chub
Maximum lifespan 8.00 years (Gila robusta@AnAge)

Total mtDNA (size: 16595 bases) GC AT G C A T
Base content (bases) 7293 9302 4347 2946 4499 4803
Base content per 1 kb (bases) 439 561 262 178 271 289
Base content (%) 43.9% 56.1%
Total protein-coding genes (size: 11407 bases) GC AT G C A T
Base content (bases) 5023 6384 3138 1885 3228 3156
Base content per 1 kb (bases) 440 560 275 165 283 277
Base content (%) 44.0% 56.0%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1568 bases) GC AT G C A T
Base content (bases) 705 863 377 328 399 464
Base content per 1 kb (bases) 450 550 240 209 254 296
Base content (%) 45.0% 55.0%
Total rRNA-coding genes (size: 2650 bases) GC AT G C A T
Base content (bases) 1207 1443 620 587 561 882
Base content per 1 kb (bases) 455 545 234 222 212 333
Base content (%) 45.5% 54.5%
12S rRNA gene (size: 958 bases) GC AT G C A T
Base content (bases) 473 485 249 224 192 293
Base content per 1 kb (bases) 494 506 260 234 200 306
Base content (%) 49.4% 50.6%
16S rRNA gene (size: 1692 bases) GC AT G C A T
Base content (bases) 734 958 371 363 369 589
Base content per 1 kb (bases) 434 566 219 215 218 348
Base content (%) 43.4% 56.6%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 296 388 189 107 198 190
Base content per 1 kb (bases) 433 567 276 156 289 278
Base content (%) 43.3% 56.7%
ATP8 (size: 165 bases) GC AT G C A T
Base content (bases) 70 95 47 23 38 57
Base content per 1 kb (bases) 424 576 285 139 230 345
Base content (%) 42.4% 57.6%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 678 873 391 287 476 397
Base content per 1 kb (bases) 437 563 252 185 307 256
Base content (%) 43.7% 56.3%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 288 403 174 114 198 205
Base content per 1 kb (bases) 417 583 252 165 287 297
Base content (%) 41.7% 58.3%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 357 428 214 143 230 198
Base content per 1 kb (bases) 455 545 273 182 293 252
Base content (%) 45.5% 54.5%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 485 656 307 178 341 315
Base content per 1 kb (bases) 425 575 269 156 299 276
Base content (%) 42.5% 57.5%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 431 544 271 160 285 259
Base content per 1 kb (bases) 442 558 278 164 292 266
Base content (%) 44.2% 55.8%
ND2 (size: 1047 bases) GC AT G C A T
Base content (bases) 505 542 323 182 271 271
Base content per 1 kb (bases) 482 518 309 174 259 259
Base content (%) 48.2% 51.8%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 160 191 99 61 103 88
Base content per 1 kb (bases) 456 544 282 174 293 251
Base content (%) 45.6% 54.4%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 599 782 374 225 406 376
Base content per 1 kb (bases) 434 566 271 163 294 272
Base content (%) 43.4% 56.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 136 161 89 47 84 77
Base content per 1 kb (bases) 458 542 300 158 283 259
Base content (%) 45.8% 54.2%
ND5 (size: 1836 bases) GC AT G C A T
Base content (bases) 779 1057 498 281 514 543
Base content per 1 kb (bases) 424 576 271 153 280 296
Base content (%) 42.4% 57.6%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 243 279 163 80 90 189
Base content per 1 kb (bases) 466 534 312 153 172 362
Base content (%) 46.6% 53.4%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%)
Alanine (Ala, A)
n = 20 (8.81%)
Serine (Ser, S)
n = 8 (3.52%)
Threonine (Thr, T)
n = 20 (8.81%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 18 (7.93%)
Leucine (Leu, L)
n = 47 (20.7%)
Isoleucine (Ile, I)
n = 21 (9.25%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 18 (7.93%)
Phenylalanine (Phe, F)
n = 13 (5.73%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 8 9 10 5 15 7 9 7 1 4 2 8 4 7 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 2 10 7 1 1 2 4 3 2 4 9 3 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 9 3 0 2 2 0 1 3 1 2 1 1 6 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 3 1 0 1 0 0 0 6 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 72 67 36
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 62 31 110
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 55 92 52
ATP8 (size: 165 bases)
Amino acid sequence: MPQLNPSPWFAILVFSWVVFLTVIPTKILNHTAPNEPTPMSEEKHKTEPWNWPW*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (3.7%)
Serine (Ser, S)
n = 3 (5.56%)
Threonine (Thr, T)
n = 5 (9.26%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (7.41%)
Leucine (Leu, L)
n = 4 (7.41%)
Isoleucine (Ile, I)
n = 3 (5.56%)
Methionine (Met, M)
n = 2 (3.7%)
Proline (Pro, P)
n = 9 (16.67%)
Phenylalanine (Phe, F)
n = 3 (5.56%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.26%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 4 (7.41%)
Asparagine (Asn, N)
n = 4 (7.41%)
Glutamine (Gln, Q)
n = 1 (1.85%)
Histidine (His, H)
n = 2 (3.7%)
Lysine (Lys, K)
n = 3 (5.56%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 1 1 1 0 3 0 0 1 0 2 1 1 0 1 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 2 0 0 0 0 0 1 3 4 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 1 0 0 0 1 0 1 1 0 0 1 0 2 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 1 0 0 2 1 0 0 0 0 0 0 0 1 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
10 16 19 10
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 17 15 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 14 23 12
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 48 (9.3%)
Serine (Ser, S)
n = 30 (5.81%)
Threonine (Thr, T)
n = 35 (6.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 45 (8.72%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 37 (7.17%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 16 (3.1%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 18 (3.49%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 9 14 19 9 16 6 11 8 0 13 6 20 6 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 1 0 12 21 15 0 10 11 16 9 6 6 13 3 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 20 1 8 4 12 2 1 3 8 10 3 1 7 9 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 7 4 5 10 8 0 1 1 4 2 0 0 1 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
165 112 123 117
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 137 95 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 142 179 150
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 16 (6.99%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 11 (4.8%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 21 (9.17%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 17 (7.42%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 3 10 6 3 11 1 7 8 0 7 5 8 1 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 1 10 4 1 2 2 3 2 2 4 6 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 4 1 4 3 5 1 2 2 3 6 1 0 3 1 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 14 1 4 9 4 0 2 1 2 1 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 59 52 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 54 63 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 61 90 65
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 19 (7.31%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 13 (5.0%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 3 6 10 4 11 4 3 6 3 7 2 9 1 12 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 2 11 9 0 5 8 5 4 3 1 8 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 12 1 4 2 5 0 1 2 4 7 1 0 1 0 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 5 5 2 3 2 0 0 3 2 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 71 49 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 67 54 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 76 94 70
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 30 (7.92%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 23 (6.07%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 24 (6.33%)
Leucine (Leu, L)
n = 63 (16.62%)
Isoleucine (Ile, I)
n = 28 (7.39%)
Methionine (Met, M)
n = 14 (3.69%)
Proline (Pro, P)
n = 20 (5.28%)
Phenylalanine (Phe, F)
n = 28 (7.39%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 12 12 12 6 24 6 13 6 1 6 6 7 5 13 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 4 10 14 2 3 9 10 4 5 5 8 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 8 0 6 2 14 0 2 1 5 10 1 2 4 12 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 4 2 5 6 8 1 0 0 7 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
97 95 93 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 95 76 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 117 146 88
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (6.17%)
Alanine (Ala, A)
n = 33 (10.19%)
Serine (Ser, S)
n = 23 (7.1%)
Threonine (Thr, T)
n = 17 (5.25%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 19 (5.86%)
Leucine (Leu, L)
n = 62 (19.14%)
Isoleucine (Ile, I)
n = 22 (6.79%)
Methionine (Met, M)
n = 13 (4.01%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 13 (4.01%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 8 8 11 8 22 4 15 7 0 1 3 12 3 11 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 3 13 15 2 1 10 6 3 6 11 4 3 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 7 1 5 5 8 1 1 3 11 2 0 2 5 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 9 2 2 2 4 3 0 3 2 3 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 88 74 76
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 93 58 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 90 127 75
ND2 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 46 (13.22%)
Serine (Ser, S)
n = 24 (6.9%)
Threonine (Thr, T)
n = 39 (11.21%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 15 (4.31%)
Leucine (Leu, L)
n = 70 (20.11%)
Isoleucine (Ile, I)
n = 22 (6.32%)
Methionine (Met, M)
n = 19 (5.46%)
Proline (Pro, P)
n = 19 (5.46%)
Phenylalanine (Phe, F)
n = 8 (2.3%)
Tyrosine (Tyr, Y)
n = 8 (2.3%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 4 (1.15%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 7 (2.01%)
Glutamine (Gln, Q)
n = 13 (3.74%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 5 11 13 12 20 9 10 7 6 6 4 3 2 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 1 8 20 15 3 3 4 6 5 7 9 3 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 15 3 2 8 2 3 2 7 3 5 1 6 3 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 1 2 2 7 2 0 1 1 2 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 97 105 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 119 53 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
52 107 113 77
ND3 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 46 (13.22%)
Serine (Ser, S)
n = 24 (6.9%)
Threonine (Thr, T)
n = 39 (11.21%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 15 (4.31%)
Leucine (Leu, L)
n = 70 (20.11%)
Isoleucine (Ile, I)
n = 22 (6.32%)
Methionine (Met, M)
n = 19 (5.46%)
Proline (Pro, P)
n = 19 (5.46%)
Phenylalanine (Phe, F)
n = 8 (2.3%)
Tyrosine (Tyr, Y)
n = 8 (2.3%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 4 (1.15%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 7 (2.01%)
Glutamine (Gln, Q)
n = 13 (3.74%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 5 11 13 12 20 9 10 7 6 6 4 3 2 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 1 8 20 15 3 3 4 6 5 7 9 3 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 15 3 2 8 2 3 2 7 3 5 1 6 3 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 1 2 2 7 2 0 1 1 2 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 97 105 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 119 53 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
52 107 113 77
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (6.32%)
Alanine (Ala, A)
n = 36 (7.84%)
Serine (Ser, S)
n = 31 (6.75%)
Threonine (Thr, T)
n = 37 (8.06%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 21 (4.58%)
Leucine (Leu, L)
n = 86 (18.74%)
Isoleucine (Ile, I)
n = 40 (8.71%)
Methionine (Met, M)
n = 28 (6.1%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 20 (4.36%)
Aspartic acid (Asp, D)
n = 3 (0.65%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 10 (2.18%)
Glutamine (Gln, Q)
n = 12 (2.61%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 11 18 21 12 22 9 20 8 4 5 2 9 5 9 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 2 3 5 15 14 2 3 13 6 7 6 8 12 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 15 2 10 7 7 0 0 7 9 5 3 2 4 6 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 8 3 1 2 8 3 0 3 6 2 0 0 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
100 126 133 101
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
72 124 73 191
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
53 124 170 113
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 5 5 4 8 1 4 3 0 0 0 2 0 6 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 2 4 5 2 1 2 1 1 1 0 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 5 0 1 2 3 0 0 4 0 0 0 0 1 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 2 0 1 0 0 0 2 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
24 30 22 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 29 14 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 30 41 21
ND5 (size: 1836 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.24%)
Alanine (Ala, A)
n = 59 (9.66%)
Serine (Ser, S)
n = 37 (6.06%)
Threonine (Thr, T)
n = 53 (8.67%)
Cysteine (Cys, C)
n = 5 (0.82%)
Valine (Val, V)
n = 30 (4.91%)
Leucine (Leu, L)
n = 97 (15.88%)
Isoleucine (Ile, I)
n = 51 (8.35%)
Methionine (Met, M)
n = 33 (5.4%)
Proline (Pro, P)
n = 28 (4.58%)
Phenylalanine (Phe, F)
n = 39 (6.38%)
Tyrosine (Tyr, Y)
n = 12 (1.96%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 13 (2.13%)
Glutamic acid (Glu, E)
n = 11 (1.8%)
Asparagine (Asn, N)
n = 29 (4.75%)
Glutamine (Gln, Q)
n = 20 (3.27%)
Histidine (His, H)
n = 15 (2.45%)
Lysine (Lys, K)
n = 24 (3.93%)
Arginine (Arg, R)
n = 9 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
31 20 21 22 12 33 8 22 19 1 12 5 9 4 15 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
12 1 4 7 31 15 6 3 6 16 7 8 10 9 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 22 6 6 5 12 4 3 7 8 4 5 0 13 16 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 7 4 6 7 19 5 0 2 4 3 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
145 147 200 120
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
70 167 125 250
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
66 184 218 144
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 18 (10.4%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 26 (15.03%)
Leucine (Leu, L)
n = 32 (18.5%)
Isoleucine (Ile, I)
n = 7 (4.05%)
Methionine (Met, M)
n = 6 (3.47%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 8 (4.62%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 5 (2.89%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 0 3 6 0 6 4 13 0 0 8 2 8 8 6 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 3 0 7 5 2 4 6 2 5 12 0 2 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 1 3 2 2 2 3 0 6 2 2 3 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 4 2 0 1 0 1 1 0 3 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 25 23 50
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 36 18 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 19 49 60
Total protein-coding genes (size: 11425 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 249 (6.54%)
Alanine (Ala, A)
n = 354 (9.3%)
Serine (Ser, S)
n = 240 (6.31%)
Threonine (Thr, T)
n = 283 (7.44%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 248 (6.52%)
Leucine (Leu, L)
n = 629 (16.53%)
Isoleucine (Ile, I)
n = 271 (7.12%)
Methionine (Met, M)
n = 177 (4.65%)
Proline (Pro, P)
n = 213 (5.6%)
Phenylalanine (Phe, F)
n = 226 (5.94%)
Tyrosine (Tyr, Y)
n = 113 (2.97%)
Tryptophan (Trp, W)
n = 120 (3.15%)
Aspartic acid (Asp, D)
n = 76 (2.0%)
Glutamic acid (Glu, E)
n = 101 (2.65%)
Asparagine (Asn, N)
n = 114 (3.0%)
Glutamine (Gln, Q)
n = 99 (2.6%)
Histidine (His, H)
n = 104 (2.73%)
Lysine (Lys, K)
n = 80 (2.1%)
Arginine (Arg, R)
n = 75 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
190 81 118 138 81 198 62 131 83 16 73 38 97 40 115 111
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
59 11 15 56 153 122 23 38 72 81 58 49 65 83 16 36
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
104 124 19 50 43 76 14 17 40 58 55 20 19 51 63 34
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
70 68 33 31 45 64 16 4 17 37 17 0 0 5 4 100
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1028 970 982 827
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
527 1033 696 1551
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
416 1053 1387 951 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​G​i​l​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ r​o​b​u​s​t​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.