Viewing data for Cyprinella lutrensis


Scientific name Cyprinella lutrensis
Common name Red shiner
Maximum lifespan 2.00 years (Cyprinella lutrensis@AnAge)

Total mtDNA (size: 16706 bases) GC AT G C A T
Base content (bases) 7528 9178 4461 3067 4545 4633
Base content per 1 kb (bases) 451 549 267 184 272 277
Base content (%) 45.1% 54.9%
Total protein-coding genes (size: 11400 bases) GC AT G C A T
Base content (bases) 5156 6244 3187 1969 3268 2976
Base content per 1 kb (bases) 452 548 280 173 287 261
Base content (%) 45.2% 54.8%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1561 bases) GC AT G C A T
Base content (bases) 719 842 384 335 387 455
Base content per 1 kb (bases) 461 539 246 215 248 291
Base content (%) 46.1% 53.9%
Total rRNA-coding genes (size: 2639 bases) GC AT G C A T
Base content (bases) 1242 1397 645 597 542 855
Base content per 1 kb (bases) 471 529 244 226 205 324
Base content (%) 47.1% 52.9%
12S rRNA gene (size: 956 bases) GC AT G C A T
Base content (bases) 478 478 252 226 188 290
Base content per 1 kb (bases) 500 500 264 236 197 303
Base content (%) 50.0% 50.0%
16S rRNA gene (size: 1683 bases) GC AT G C A T
Base content (bases) 764 919 393 371 354 565
Base content per 1 kb (bases) 454 546 234 220 210 336
Base content (%) 45.4% 54.6%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 277 407 181 96 217 190
Base content per 1 kb (bases) 405 595 265 140 317 278
Base content (%) 40.5% 59.5%
ATP8 (size: 162 bases) GC AT G C A T
Base content (bases) 65 97 47 18 41 56
Base content per 1 kb (bases) 401 599 290 111 253 346
Base content (%) 40.1% 59.9%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 674 877 389 285 478 399
Base content per 1 kb (bases) 435 565 251 184 308 257
Base content (%) 43.5% 56.5%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 299 392 172 127 194 198
Base content per 1 kb (bases) 433 567 249 184 281 287
Base content (%) 43.3% 56.7%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 362 422 208 154 230 192
Base content per 1 kb (bases) 462 538 265 196 293 245
Base content (%) 46.2% 53.8%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 528 613 336 192 334 279
Base content per 1 kb (bases) 463 537 294 168 293 245
Base content (%) 46.3% 53.7%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 485 490 292 193 286 204
Base content per 1 kb (bases) 497 503 299 198 293 209
Base content (%) 49.7% 50.3%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 510 535 331 179 270 265
Base content per 1 kb (bases) 488 512 317 171 258 254
Base content (%) 48.8% 51.2%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 149 200 93 56 106 94
Base content per 1 kb (bases) 427 573 266 160 304 269
Base content (%) 42.7% 57.3%
ND4 (size: 1382 bases) GC AT G C A T
Base content (bases) 621 761 386 235 412 349
Base content per 1 kb (bases) 449 551 279 170 298 253
Base content (%) 44.9% 55.1%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 134 163 87 47 88 75
Base content per 1 kb (bases) 451 549 293 158 296 253
Base content (%) 45.1% 54.9%
ND5 (size: 1836 bases) GC AT G C A T
Base content (bases) 813 1023 510 303 521 502
Base content per 1 kb (bases) 443 557 278 165 284 273
Base content (%) 44.3% 55.7%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 242 280 156 86 97 183
Base content per 1 kb (bases) 464 536 299 165 186 351
Base content (%) 46.4% 53.6%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%)
Alanine (Ala, A)
n = 20 (8.81%)
Serine (Ser, S)
n = 9 (3.96%)
Threonine (Thr, T)
n = 22 (9.69%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 15 (6.61%)
Leucine (Leu, L)
n = 48 (21.15%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 15 (6.61%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 6 9 11 7 13 0 14 7 1 6 2 7 0 8 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 5 4 10 1 1 1 3 5 4 4 7 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 8 4 3 0 2 0 0 4 1 2 1 3 4 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 2 0 1 1 0 0 2 4 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
50 65 67 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 64 31 108
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 52 92 63
ATP8 (size: 162 bases)
Amino acid sequence: MPQLNPSPWFEILVFSWLIIITFIPTKVLDFLTPNKPAPSEMKHKSNPWNWPW*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.89%)
Serine (Ser, S)
n = 4 (7.55%)
Threonine (Thr, T)
n = 3 (5.66%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.77%)
Leucine (Leu, L)
n = 5 (9.43%)
Isoleucine (Ile, I)
n = 5 (9.43%)
Methionine (Met, M)
n = 2 (3.77%)
Proline (Pro, P)
n = 9 (16.98%)
Phenylalanine (Phe, F)
n = 4 (7.55%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.43%)
Aspartic acid (Asp, D)
n = 1 (1.89%)
Glutamic acid (Glu, E)
n = 2 (3.77%)
Asparagine (Asn, N)
n = 4 (7.55%)
Glutamine (Gln, Q)
n = 1 (1.89%)
Histidine (His, H)
n = 1 (1.89%)
Lysine (Lys, K)
n = 4 (7.55%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 3 1 1 1 1 0 2 1 0 1 0 1 0 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 0 0 0 0 0 0 1 4 3 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 1 0 0 1 0 1 2 0 0 1 0 1 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 0 0 1 4 0 0 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 14 21 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 14 14 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 19 21 10
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 45 (8.72%)
Alanine (Ala, A)
n = 49 (9.5%)
Serine (Ser, S)
n = 30 (5.81%)
Threonine (Thr, T)
n = 34 (6.59%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 46 (8.91%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 36 (6.98%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 16 (3.1%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 18 (3.49%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 8 14 15 11 16 4 14 5 3 10 9 22 5 19 23
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 1 12 20 16 1 11 10 14 10 7 5 16 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 15 3 5 5 16 0 1 3 8 10 1 3 4 12 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 7 4 9 6 8 0 2 2 3 1 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
166 108 121 122
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
75 137 95 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 144 183 146
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 11 (4.8%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 22 (9.61%)
Leucine (Leu, L)
n = 27 (11.79%)
Isoleucine (Ile, I)
n = 16 (6.99%)
Methionine (Met, M)
n = 13 (5.68%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 3 8 10 1 7 1 7 7 1 4 7 9 2 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 2 2 8 7 0 2 1 4 2 2 5 5 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 4 3 3 5 4 0 0 4 4 5 0 1 3 1 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 9 6 5 8 3 1 1 0 4 1 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 57 52 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 54 63 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 61 83 61
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (8.85%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 11 (4.23%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 6 5 8 2 7 5 7 9 0 3 2 8 4 12 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 3 11 8 0 2 8 6 7 4 4 4 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 7 6 4 2 4 1 0 3 3 8 1 3 1 0 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 9 1 2 3 1 1 1 1 2 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 64 51 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 67 54 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 77 87 64
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 31 (8.18%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 26 (6.86%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 24 (6.33%)
Leucine (Leu, L)
n = 63 (16.62%)
Isoleucine (Ile, I)
n = 26 (6.86%)
Methionine (Met, M)
n = 12 (3.17%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 29 (7.65%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 15 9 8 14 16 10 11 6 1 6 8 7 3 8 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 1 6 10 13 2 9 5 11 1 5 7 6 3 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 7 1 3 9 7 2 0 2 6 9 4 4 8 8 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 1 5 3 7 7 2 2 0 3 3 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
97 97 91 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 99 76 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 140 112 84
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.86%)
Alanine (Ala, A)
n = 33 (10.19%)
Serine (Ser, S)
n = 22 (6.79%)
Threonine (Thr, T)
n = 19 (5.86%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 24 (7.41%)
Leucine (Leu, L)
n = 61 (18.83%)
Isoleucine (Ile, I)
n = 24 (7.41%)
Methionine (Met, M)
n = 8 (2.47%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 13 (4.01%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 5 (1.54%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 16 3 19 13 8 7 7 2 5 6 4 8 6 5 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 4 15 12 2 4 5 5 5 6 9 6 3 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 5 2 7 3 6 3 1 2 8 5 4 7 4 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 9 1 2 3 4 0 1 4 3 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
90 91 71 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 95 57 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
65 106 76 78
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.48%)
Alanine (Ala, A)
n = 43 (12.39%)
Serine (Ser, S)
n = 21 (6.05%)
Threonine (Thr, T)
n = 42 (12.1%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 20 (5.76%)
Leucine (Leu, L)
n = 68 (19.6%)
Isoleucine (Ile, I)
n = 17 (4.9%)
Methionine (Met, M)
n = 17 (4.9%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 8 (2.31%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 8 (2.31%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 6 11 12 19 17 4 10 9 4 6 5 6 3 5 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 11 16 14 2 3 5 3 8 3 8 7 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 15 4 2 9 3 2 0 5 3 5 3 6 5 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 1 0 3 4 5 0 2 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
90 96 98 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 120 54 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
49 115 113 71
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.48%)
Alanine (Ala, A)
n = 43 (12.39%)
Serine (Ser, S)
n = 21 (6.05%)
Threonine (Thr, T)
n = 42 (12.1%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 20 (5.76%)
Leucine (Leu, L)
n = 68 (19.6%)
Isoleucine (Ile, I)
n = 17 (4.9%)
Methionine (Met, M)
n = 17 (4.9%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 8 (2.31%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 8 (2.31%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 6 11 12 19 17 4 10 9 4 6 5 6 3 5 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 11 16 14 2 3 5 3 8 3 8 7 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 15 4 2 9 3 2 0 5 3 5 3 6 5 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 1 0 3 4 5 0 2 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
90 96 98 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 120 54 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
49 115 113 71
ND4 (size: 1382 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.88%)
Alanine (Ala, A)
n = 38 (8.28%)
Serine (Ser, S)
n = 32 (6.97%)
Threonine (Thr, T)
n = 39 (8.5%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 22 (4.79%)
Leucine (Leu, L)
n = 84 (18.3%)
Isoleucine (Ile, I)
n = 38 (8.28%)
Methionine (Met, M)
n = 27 (5.88%)
Proline (Pro, P)
n = 28 (6.1%)
Phenylalanine (Phe, F)
n = 17 (3.7%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 20 (4.36%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 9 (1.96%)
Glutamine (Gln, Q)
n = 12 (2.61%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 16 18 23 12 22 7 16 5 7 7 6 8 1 9 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 2 3 11 13 12 2 2 10 8 7 8 10 7 3 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 10 5 8 8 8 0 2 6 8 6 6 4 2 7 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 7 4 0 4 5 5 3 1 5 2 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
102 127 131 100
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 129 72 188
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
62 130 145 123
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 12 (12.24%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 10 (10.2%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 3 3 3 10 2 3 2 1 0 0 2 0 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 2 4 4 2 2 1 2 0 0 1 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 5 0 2 2 1 1 1 2 0 0 0 2 1 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 0 1 0 0 0 1 1 0 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
23 30 22 24
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 30 15 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 27 38 24
ND5 (size: 1836 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 31 (5.07%)
Alanine (Ala, A)
n = 56 (9.17%)
Serine (Ser, S)
n = 49 (8.02%)
Threonine (Thr, T)
n = 54 (8.84%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 31 (5.07%)
Leucine (Leu, L)
n = 95 (15.55%)
Isoleucine (Ile, I)
n = 47 (7.69%)
Methionine (Met, M)
n = 31 (5.07%)
Proline (Pro, P)
n = 27 (4.42%)
Phenylalanine (Phe, F)
n = 36 (5.89%)
Tyrosine (Tyr, Y)
n = 13 (2.13%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 14 (2.29%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 29 (4.75%)
Glutamine (Gln, Q)
n = 19 (3.11%)
Histidine (His, H)
n = 13 (2.13%)
Lysine (Lys, K)
n = 23 (3.76%)
Arginine (Arg, R)
n = 11 (1.8%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
35 12 18 30 17 19 8 15 15 4 9 9 12 1 14 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
13 1 5 6 23 20 7 4 11 10 6 8 7 8 4 15
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 18 3 8 11 11 4 1 14 4 9 4 6 14 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 4 8 4 10 13 10 0 2 5 4 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
144 144 199 125
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 171 124 240
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
82 195 179 156
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 11 (6.36%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 22 (12.72%)
Leucine (Leu, L)
n = 31 (17.92%)
Isoleucine (Ile, I)
n = 6 (3.47%)
Methionine (Met, M)
n = 9 (5.2%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 7 (4.05%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 5 (2.89%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 1 (0.58%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 2 7 4 0 10 0 10 0 1 8 2 4 8 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 7 4 4 4 5 2 5 13 3 1 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 1 4 2 2 0 3 0 3 4 3 7 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 2 2 1 1 0 2 0 2 1 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 25 25 50
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 37 19 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
42 24 53 55
Total protein-coding genes (size: 11419 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 246 (6.47%)
Alanine (Ala, A)
n = 349 (9.18%)
Serine (Ser, S)
n = 247 (6.49%)
Threonine (Thr, T)
n = 297 (7.81%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 250 (6.57%)
Leucine (Leu, L)
n = 625 (16.43%)
Isoleucine (Ile, I)
n = 261 (6.86%)
Methionine (Met, M)
n = 169 (4.44%)
Proline (Pro, P)
n = 214 (5.63%)
Phenylalanine (Phe, F)
n = 233 (6.13%)
Tyrosine (Tyr, Y)
n = 113 (2.97%)
Tryptophan (Trp, W)
n = 119 (3.13%)
Aspartic acid (Asp, D)
n = 77 (2.02%)
Glutamic acid (Glu, E)
n = 101 (2.66%)
Asparagine (Asn, N)
n = 111 (2.92%)
Glutamine (Gln, Q)
n = 99 (2.6%)
Histidine (His, H)
n = 105 (2.76%)
Lysine (Lys, K)
n = 79 (2.08%)
Arginine (Arg, R)
n = 76 (2.0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
165 96 108 147 105 154 50 123 70 29 66 55 96 33 101 132
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
61 12 14 70 132 124 23 46 60 76 64 51 67 76 20 68
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
97 98 34 50 57 67 15 11 47 50 63 29 46 47 64 34
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
71 58 43 30 47 50 29 12 12 35 17 0 0 7 0 90
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1023 950 975 856
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
525 1049 692 1538
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
493 1119 1232 960 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​y​p​r​i​n​e​l​l​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ l​u​t​r​e​n​s​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.