Viewing data for Oreoleuciscus potanini


Scientific name Oreoleuciscus potanini
Common name Altai osman
Maximum lifespan 40.00 years (Oreoleuciscus potanini@AnAge)

Total mtDNA (size: 16602 bases) GC AT G C A T
Base content (bases) 7637 8965 4520 3117 4385 4580
Base content per 1 kb (bases) 460 540 272 188 264 276
Base content (%) 46.0% 54.0%
Total protein-coding genes (size: 11402 bases) GC AT G C A T
Base content (bases) 5303 6099 3275 2028 3141 2958
Base content per 1 kb (bases) 465 535 287 178 275 259
Base content (%) 46.5% 53.5%
D-loop (size: 932 bases) GC AT G C A T
Base content (bases) 339 593 201 138 294 299
Base content per 1 kb (bases) 364 636 216 148 315 321
Base content (%) 36.4% 63.6%
Total tRNA-coding genes (size: 1564 bases) GC AT G C A T
Base content (bases) 715 849 383 332 394 455
Base content per 1 kb (bases) 457 543 245 212 252 291
Base content (%) 45.7% 54.3%
Total rRNA-coding genes (size: 2647 bases) GC AT G C A T
Base content (bases) 1251 1396 645 606 542 854
Base content per 1 kb (bases) 473 527 244 229 205 323
Base content (%) 47.3% 52.7%
12S rRNA gene (size: 956 bases) GC AT G C A T
Base content (bases) 488 468 254 234 183 285
Base content per 1 kb (bases) 510 490 266 245 191 298
Base content (%) 51.0% 49.0%
16S rRNA gene (size: 1691 bases) GC AT G C A T
Base content (bases) 763 928 391 372 359 569
Base content per 1 kb (bases) 451 549 231 220 212 336
Base content (%) 45.1% 54.9%

ATP6 (size: 683 bases) GC AT G C A T
Base content (bases) 302 381 191 111 204 177
Base content per 1 kb (bases) 442 558 280 163 299 259
Base content (%) 44.2% 55.8%
ATP8 (size: 165 bases) GC AT G C A T
Base content (bases) 67 98 44 23 40 58
Base content per 1 kb (bases) 406 594 267 139 242 352
Base content (%) 40.6% 59.4%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 695 856 395 300 470 386
Base content per 1 kb (bases) 448 552 255 193 303 249
Base content (%) 44.8% 55.2%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 300 391 174 126 193 198
Base content per 1 kb (bases) 434 566 252 182 279 287
Base content (%) 43.4% 56.6%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 369 415 220 149 225 190
Base content per 1 kb (bases) 471 529 281 190 287 242
Base content (%) 47.1% 52.9%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 531 610 336 195 326 284
Base content per 1 kb (bases) 465 535 294 171 286 249
Base content (%) 46.5% 53.5%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 488 487 290 198 270 217
Base content per 1 kb (bases) 501 499 297 203 277 223
Base content (%) 50.1% 49.9%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 529 516 347 182 258 258
Base content per 1 kb (bases) 506 494 332 174 247 247
Base content (%) 50.6% 49.4%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 170 179 103 67 99 80
Base content per 1 kb (bases) 487 513 295 192 284 229
Base content (%) 48.7% 51.3%
ND4 (size: 1382 bases) GC AT G C A T
Base content (bases) 630 752 387 243 391 361
Base content per 1 kb (bases) 456 544 280 176 283 261
Base content (%) 45.6% 54.4%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 140 157 89 51 79 78
Base content per 1 kb (bases) 471 529 300 172 266 263
Base content (%) 47.1% 52.9%
ND5 (size: 1836 bases) GC AT G C A T
Base content (bases) 826 1010 531 295 514 496
Base content per 1 kb (bases) 450 550 289 161 280 270
Base content (%) 45.0% 55.0%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 259 263 168 91 79 184
Base content per 1 kb (bases) 496 504 322 174 151 352
Base content (%) 49.6% 50.4%

ATP6 (size: 683 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.42%)
Alanine (Ala, A)
n = 19 (8.41%)
Serine (Ser, S)
n = 11 (4.87%)
Threonine (Thr, T)
n = 21 (9.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 21 (9.29%)
Leucine (Leu, L)
n = 45 (19.91%)
Isoleucine (Ile, I)
n = 19 (8.41%)
Methionine (Met, M)
n = 12 (5.31%)
Proline (Pro, P)
n = 17 (7.52%)
Phenylalanine (Phe, F)
n = 13 (5.75%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 8 (3.54%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 3 (1.33%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 7 6 12 4 14 6 8 6 2 3 6 8 4 10 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 1 9 7 2 2 3 3 2 2 7 7 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 12 0 3 1 1 0 1 5 1 2 0 1 2 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 3 1 0 1 0 2 0 2 2 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 70 67 35
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 62 28 110
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 59 81 58
ATP8 (size: 165 bases)
Amino acid sequence: MPQLNPNPWFAIMVFSWVVFLTIIPTKIMNNLAPNEPAPMSKEEHKADSWTWPW*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 4 (7.41%)
Serine (Ser, S)
n = 3 (5.56%)
Threonine (Thr, T)
n = 3 (5.56%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.56%)
Leucine (Leu, L)
n = 3 (5.56%)
Isoleucine (Ile, I)
n = 4 (7.41%)
Methionine (Met, M)
n = 4 (7.41%)
Proline (Pro, P)
n = 8 (14.81%)
Phenylalanine (Phe, F)
n = 3 (5.56%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.26%)
Aspartic acid (Asp, D)
n = 1 (1.85%)
Glutamic acid (Glu, E)
n = 3 (5.56%)
Asparagine (Asn, N)
n = 5 (9.26%)
Glutamine (Gln, Q)
n = 1 (1.85%)
Histidine (His, H)
n = 1 (1.85%)
Lysine (Lys, K)
n = 3 (5.56%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 2 2 1 1 0 0 1 1 0 0 0 3 0 0 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 1 1 2 0 0 0 0 0 2 1 4 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 0 0 1 1 0 0 1 0 0 0 0 2 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 0 0 1 1 2 0 0 0 0 0 0 0 1 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
11 12 20 12
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 17 15 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 15 23 11
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 46 (8.91%)
Serine (Ser, S)
n = 31 (6.01%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 45 (8.72%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 37 (7.17%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 16 (3.1%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 18 (3.49%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 11 10 17 10 14 7 12 8 0 13 5 18 9 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
13 0 1 10 22 11 3 8 13 12 13 3 9 14 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 21 2 9 3 14 1 1 3 10 8 0 2 7 9 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 5 6 5 10 7 1 2 1 3 2 0 0 1 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
163 110 124 120
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 137 95 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
61 148 167 141
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 16 (6.99%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 11 (4.8%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 22 (9.61%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 16 (6.99%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 4 8 7 2 5 3 7 6 2 7 4 9 2 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 3 8 4 1 1 3 5 0 2 4 6 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 5 1 1 6 6 0 1 3 5 4 1 4 4 0 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 12 3 1 12 3 1 1 0 4 1 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 55 51 49
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 54 63 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 65 84 56
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 23 (8.85%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 6 6 7 7 12 2 6 4 5 2 7 6 2 15 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 6 10 7 0 1 9 7 5 5 1 3 3 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 13 1 2 3 4 1 0 3 7 4 3 0 0 1 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 4 1 4 2 0 1 3 1 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 70 50 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 67 54 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 83 86 64
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 32 (8.44%)
Serine (Ser, S)
n = 24 (6.33%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 27 (7.12%)
Leucine (Leu, L)
n = 60 (15.83%)
Isoleucine (Ile, I)
n = 26 (6.86%)
Methionine (Met, M)
n = 12 (3.17%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 29 (7.65%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 10 10 12 11 17 11 9 5 2 5 8 9 5 11 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 2 12 13 5 3 12 8 3 1 9 8 3 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 8 1 6 6 8 1 0 3 6 9 4 0 6 10 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 4 1 3 8 8 1 1 1 3 3 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 100 90 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 98 76 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
42 138 118 82
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (6.17%)
Alanine (Ala, A)
n = 32 (9.88%)
Serine (Ser, S)
n = 22 (6.79%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 26 (8.02%)
Leucine (Leu, L)
n = 65 (20.06%)
Isoleucine (Ile, I)
n = 16 (4.94%)
Methionine (Met, M)
n = 12 (3.7%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 15 (4.63%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 2 5 11 13 18 14 5 7 0 9 7 5 5 10 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 0 1 17 8 6 3 7 7 3 3 13 5 3 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 4 5 3 3 10 3 1 2 6 6 5 4 6 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 7 4 0 4 3 4 1 1 3 3 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
93 99 69 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 95 57 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
66 96 91 72
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.9%)
Alanine (Ala, A)
n = 43 (12.39%)
Serine (Ser, S)
n = 25 (7.2%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 14 (4.03%)
Leucine (Leu, L)
n = 66 (19.02%)
Isoleucine (Ile, I)
n = 25 (7.2%)
Methionine (Met, M)
n = 21 (6.05%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 9 (2.59%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 8 (2.31%)
Glutamine (Gln, Q)
n = 15 (4.32%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 10 10 13 18 14 11 8 11 4 4 7 1 2 5 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 0 1 5 23 9 6 1 7 6 3 3 10 2 4 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 16 3 3 8 1 4 3 6 3 5 6 2 5 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 1 1 1 6 2 0 3 1 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 100 112 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 119 52 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
59 128 94 67
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.9%)
Alanine (Ala, A)
n = 43 (12.39%)
Serine (Ser, S)
n = 25 (7.2%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 14 (4.03%)
Leucine (Leu, L)
n = 66 (19.02%)
Isoleucine (Ile, I)
n = 25 (7.2%)
Methionine (Met, M)
n = 21 (6.05%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 9 (2.59%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 8 (2.31%)
Glutamine (Gln, Q)
n = 15 (4.32%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 10 10 13 18 14 11 8 11 4 4 7 1 2 5 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 0 1 5 23 9 6 1 7 6 3 3 10 2 4 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 16 3 3 8 1 4 3 6 3 5 6 2 5 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 1 1 1 6 2 0 3 1 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 100 112 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 119 52 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
59 128 94 67
ND4 (size: 1382 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (6.32%)
Alanine (Ala, A)
n = 35 (7.63%)
Serine (Ser, S)
n = 31 (6.75%)
Threonine (Thr, T)
n = 39 (8.5%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 21 (4.58%)
Leucine (Leu, L)
n = 85 (18.52%)
Isoleucine (Ile, I)
n = 40 (8.71%)
Methionine (Met, M)
n = 28 (6.1%)
Proline (Pro, P)
n = 29 (6.32%)
Phenylalanine (Phe, F)
n = 15 (3.27%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 20 (4.36%)
Aspartic acid (Asp, D)
n = 3 (0.65%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 8 (1.74%)
Glutamine (Gln, Q)
n = 12 (2.61%)
Histidine (His, H)
n = 13 (2.83%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 13 19 16 15 27 13 8 7 5 5 4 12 0 10 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 2 3 3 16 13 3 2 10 9 8 7 12 4 6 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 17 3 4 10 7 2 3 5 11 3 6 6 4 4 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 7 4 0 3 9 2 5 1 1 4 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 136 134 91
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
73 126 72 189
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
71 125 154 110
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 11 (11.22%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 10 (10.2%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 4 1 5 8 4 3 3 0 0 0 2 0 6 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 1 2 7 1 0 2 1 2 0 1 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 5 2 0 4 2 0 0 4 0 0 0 2 1 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 0 1 0 0 0 2 0 1 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
22 30 23 24
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 29 14 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 30 41 15
ND5 (size: 1836 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.24%)
Alanine (Ala, A)
n = 59 (9.66%)
Serine (Ser, S)
n = 45 (7.36%)
Threonine (Thr, T)
n = 56 (9.17%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 32 (5.24%)
Leucine (Leu, L)
n = 95 (15.55%)
Isoleucine (Ile, I)
n = 42 (6.87%)
Methionine (Met, M)
n = 34 (5.56%)
Proline (Pro, P)
n = 28 (4.58%)
Phenylalanine (Phe, F)
n = 41 (6.71%)
Tyrosine (Tyr, Y)
n = 11 (1.8%)
Tryptophan (Trp, W)
n = 15 (2.45%)
Aspartic acid (Asp, D)
n = 15 (2.45%)
Glutamic acid (Glu, E)
n = 10 (1.64%)
Asparagine (Asn, N)
n = 24 (3.93%)
Glutamine (Gln, Q)
n = 19 (3.11%)
Histidine (His, H)
n = 14 (2.29%)
Lysine (Lys, K)
n = 23 (3.76%)
Arginine (Arg, R)
n = 10 (1.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 20 19 21 19 23 11 16 16 3 12 9 8 3 17 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
15 3 3 10 25 19 5 3 12 11 6 8 11 8 1 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 19 3 6 12 13 2 3 9 7 4 4 5 9 15 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 3 7 7 8 16 7 2 3 5 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
148 145 191 128
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
75 176 117 244
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
72 210 188 142
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.87%)
Alanine (Ala, A)
n = 18 (10.4%)
Serine (Ser, S)
n = 13 (7.51%)
Threonine (Thr, T)
n = 6 (3.47%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 27 (15.61%)
Leucine (Leu, L)
n = 29 (16.76%)
Isoleucine (Ile, I)
n = 6 (3.47%)
Methionine (Met, M)
n = 6 (3.47%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 5 (2.89%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 2 4 4 3 6 7 6 0 0 11 1 5 10 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 10 3 3 2 5 2 3 14 3 0 0 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 4 3 4 1 1 3 1 6 2 0 3 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 5 1 1 0 1 2 0 2 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 29 24 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 37 18 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 25 37 61
Total protein-coding genes (size: 11421 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 247 (6.49%)
Alanine (Ala, A)
n = 349 (9.18%)
Serine (Ser, S)
n = 252 (6.63%)
Threonine (Thr, T)
n = 296 (7.78%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 261 (6.86%)
Leucine (Leu, L)
n = 619 (16.28%)
Isoleucine (Ile, I)
n = 255 (6.71%)
Methionine (Met, M)
n = 180 (4.73%)
Proline (Pro, P)
n = 214 (5.63%)
Phenylalanine (Phe, F)
n = 227 (5.97%)
Tyrosine (Tyr, Y)
n = 111 (2.92%)
Tryptophan (Trp, W)
n = 121 (3.18%)
Aspartic acid (Asp, D)
n = 77 (2.02%)
Glutamic acid (Glu, E)
n = 99 (2.6%)
Asparagine (Asn, N)
n = 106 (2.79%)
Glutamine (Gln, Q)
n = 100 (2.63%)
Histidine (His, H)
n = 103 (2.71%)
Lysine (Lys, K)
n = 78 (2.05%)
Arginine (Arg, R)
n = 76 (2.0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
165 90 104 125 112 169 92 91 77 23 71 59 88 43 121 106
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
76 9 18 53 156 104 36 30 81 76 60 41 81 64 28 49
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
96 125 26 41 64 70 15 16 46 64 47 30 30 48 58 29
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
74 57 42 22 55 56 22 17 15 26 18 0 0 5 1 91
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1033 991 977 803
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
533 1049 680 1542
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
542 1158 1203 901 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​O​r​e​o​l​e​u​c​i​s​c​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​o​t​a​n​i​n​i​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.