Stats for order Acipenseriformes
Browsing families:
| Stats for total mtDNA (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 45.2 - 46.1% | 53.9 - 54.8% | 4819 - 4938 | 2567 - 2743 | 3900 - 4114 | 4945 - 5080 | 27.0 - 118.0 |
| Median | 45.8% | 54.4% | 4886 | 2727 | 4025 | 5031 | 60.0 |
| Average ± stdev | 45.7 ± 0.3% | 54.3 ± 0.3% | 4886 ± 33 | 2704 ± 48 | 4009 ± 55 | 5023 ± 44 | 71.1 ± 29.7 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 0.01 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.18 | -0.13 | 0.19 | 0.10 | -0.09 | 0.08 | - |
| Pearson p-value (two tailed) |
6.25E-01 | 7.13E-01 | 5.91E-01 | 7.77E-01 | 7.98E-01 | 8.34E-01 | - |
| Stats for total protein-coding genes (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 46.0 - 46.9% | 53.1 - 54.0% | 3541 - 3679 | 1625 - 1749 | 2765 - 2865 | 3267 - 3352 | 27.0 - 118.0 |
| Median | 46.6% | 53.6% | 3600 | 1716 | 2805 | 3296 | 60.0 |
| Average ± stdev | 46.5 ± 0.3% | 53.5 ± 0.3% | 3598 ± 38 | 1709 ± 30 | 2807 ± 31 | 3299 ± 22 | 71.1 ± 29.7 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 0.01 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.10 | -0.09 | 0.06 | 0.04 | -0.02 | -0.07 | - |
| Pearson p-value (two tailed) |
7.74E-01 | 8.07E-01 | 8.68E-01 | 9.05E-01 | 9.48E-01 | 8.50E-01 | - |
| Stats for D-loop (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 31.2 - 38.2% | 61.8 - 68.8% | 162 - 239 | 85 - 156 | 208 - 334 | 241 - 358 | 27.0 - 118.0 |
| Median | 36.7% | 64.0% | 201 | 128 | 296 | 301 | 60.0 |
| Average ± stdev | 35.8 ± 1.9% | 64.1 ± 1.9% | 199 ± 25 | 126 ± 19 | 281 ± 34 | 300 ± 32 | 71.1 ± 29.7 |
| Coefficient of variation | 0.05 | 0.03 | 0.13 | 0.15 | 0.12 | 0.11 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.29 | -0.27 | 0.15 | 0.08 | -0.08 | 0.01 | - |
| Pearson p-value (two tailed) |
4.20E-01 | 4.43E-01 | 6.76E-01 | 8.20E-01 | 8.19E-01 | 9.85E-01 | - |
| Stats for total tRNA-coding genes (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.6 - 44.4% | 55.6 - 56.4% | 371 - 383 | 302 - 311 | 388 - 394 | 478 - 487 | 27.0 - 118.0 |
| Median | 44.0% | 56.1% | 377 | 307 | 391 | 483 | 60.0 |
| Average ± stdev | 43.9 ± 0.2% | 56.1 ± 0.2% | 377 ± 3 | 306 ± 2 | 390 ± 1 | 482 ± 2 | 71.1 ± 29.7 |
| Coefficient of variation | 0.00 | 0.00 | 0.01 | 0.01 | 0.00 | 0.01 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.15 | -0.15 | 0.29 | 0.11 | 0.01 | 0.26 | - |
| Pearson p-value (two tailed) |
6.79E-01 | 6.79E-01 | 4.09E-01 | 7.53E-01 | 9.70E-01 | 4.64E-01 | - |
| Stats for total rRNA-coding genes (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 45.8 - 46.3% | 53.5 - 54.2% | 677 - 699 | 541 - 558 | 510 - 530 | 903 - 926 | 27.0 - 118.0 |
| Median | 46.1% | 53.9% | 684 | 543 | 515 | 923 | 60.0 |
| Average ± stdev | 46.1 ± 0.2% | 53.9 ± 0.2% | 684 ± 6 | 544 ± 4 | 517 ± 5 | 919 ± 6 | 71.1 ± 29.7 |
| Coefficient of variation | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 0.01 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.12 | 0.12 | 0.12 | 0.53 | -0.13 | 0.70 | - |
| Pearson p-value (two tailed) |
7.47E-01 | 7.32E-01 | 7.34E-01 | 1.14E-01 | 7.21E-01 | 2.30E-02 | - |
| Stats for ATP6 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 46.2 - 49.1% | 50.9 - 53.8% | 224 - 238 | 90 - 100 | 171 - 185 | 177 - 185 | 27.0 - 118.0 |
| Median | 48.0% | 52.5% | 233 | 93 | 175 | 183 | 60.0 |
| Average ± stdev | 47.6 ± 0.9% | 52.4 ± 0.9% | 232 ± 4 | 93 ± 2 | 176 ± 4 | 182 ± 2 | 71.1 ± 29.7 |
| Coefficient of variation | 0.02 | 0.02 | 0.02 | 0.03 | 0.03 | 0.01 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.32 | -0.32 | 0.28 | 0.22 | -0.24 | -0.33 | - |
| Pearson p-value (two tailed) |
3.61E-01 | 3.61E-01 | 4.41E-01 | 5.44E-01 | 4.96E-01 | 3.50E-01 | - |
| Stats for ATP8 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 36.3 - 42.9% | 57.1 - 63.7% | 46 - 51 | 15 - 21 | 42 - 48 | 54 - 59 | 27.0 - 118.0 |
| Median | 41.1% | 58.9% | 50 | 19 | 44 | 56 | 60.0 |
| Average ± stdev | 40.7 ± 1.8% | 59.3 ± 1.8% | 49 ± 1 | 19 ± 1 | 43 ± 1 | 55 ± 1 | 71.1 ± 29.7 |
| Coefficient of variation | 0.04 | 0.03 | 0.03 | 0.10 | 0.04 | 0.03 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.17 | 0.17 | -0.07 | -0.20 | -0.07 | 0.35 | - |
| Pearson p-value (two tailed) |
6.39E-01 | 6.39E-01 | 8.55E-01 | 5.83E-01 | 8.47E-01 | 3.21E-01 | - |
| Stats for COX1 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 47.0 - 48.3% | 51.7 - 53.0% | 432 - 450 | 289 - 301 | 418 - 440 | 379 - 387 | 27.0 - 118.0 |
| Median | 47.7% | 52.4% | 444 | 300 | 434 | 384 | 60.0 |
| Average ± stdev | 47.6 ± 0.5% | 52.4 ± 0.5% | 441 ± 6 | 298 ± 3 | 430 ± 7 | 383 ± 2 | 71.1 ± 29.7 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.17 | -0.17 | 0.26 | -0.10 | -0.34 | 0.69 | - |
| Pearson p-value (two tailed) |
6.32E-01 | 6.32E-01 | 4.70E-01 | 7.74E-01 | 3.38E-01 | 2.86E-02 | - |
| Stats for COX2 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.2 - 45.9% | 54.1 - 56.8% | 185 - 194 | 108 - 126 | 168 - 174 | 205 - 226 | 27.0 - 118.0 |
| Median | 44.6% | 55.6% | 191 | 119 | 171 | 213 | 60.0 |
| Average ± stdev | 44.5 ± 0.8% | 55.5 ± 0.8% | 190 ± 2 | 117 ± 4 | 170 ± 1 | 213 ± 5 | 71.1 ± 29.7 |
| Coefficient of variation | 0.02 | 0.01 | 0.02 | 0.04 | 0.01 | 0.03 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.06 | -0.06 | 0.01 | 0.14 | 0.08 | -0.00 | - |
| Pearson p-value (two tailed) |
8.64E-01 | 8.64E-01 | 9.79E-01 | 7.08E-01 | 8.31E-01 | 9.90E-01 | - |
| Stats for COX3 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 47.3 - 48.8% | 51.2 - 52.7% | 240 - 246 | 130 - 139 | 195 - 202 | 205 - 214 | 27.0 - 118.0 |
| Median | 48.0% | 52.1% | 243 | 134 | 197 | 211 | 60.0 |
| Average ± stdev | 48.1 ± 0.5% | 51.9 ± 0.5% | 243 ± 1 | 134 ± 2 | 197 ± 2 | 209 ± 3 | 71.1 ± 29.7 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.57 | 0.57 | -0.14 | -0.58 | 0.10 | 0.52 | - |
| Pearson p-value (two tailed) |
8.64E-02 | 8.64E-02 | 6.94E-01 | 7.79E-02 | 7.94E-01 | 1.21E-01 | - |
| Stats for CYTB (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 45.8 - 47.1% | 52.9 - 54.2% | 351 - 373 | 162 - 177 | 291 - 309 | 307 - 316 | 27.0 - 118.0 |
| Median | 46.5% | 53.5% | 359 | 172 | 300 | 311 | 60.0 |
| Average ± stdev | 46.4 ± 0.4% | 53.6 ± 0.4% | 359 ± 6 | 170 ± 4 | 300 ± 4 | 311 ± 3 | 71.1 ± 29.7 |
| Coefficient of variation | 0.01 | 0.01 | 0.02 | 0.03 | 0.02 | 0.01 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.53 | 0.53 | -0.28 | -0.18 | 0.20 | 0.44 | - |
| Pearson p-value (two tailed) |
1.14E-01 | 1.14E-01 | 4.26E-01 | 6.22E-01 | 5.76E-01 | 2.03E-01 | - |
| Stats for ND1 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 45.8 - 47.6% | 52.4 - 54.2% | 308 - 335 | 129 - 145 | 237 - 252 | 269 - 279 | 27.0 - 118.0 |
| Median | 46.6% | 53.8% | 311 | 140 | 248 | 276 | 60.0 |
| Average ± stdev | 46.5 ± 0.6% | 53.5 ± 0.6% | 313 ± 7 | 139 ± 4 | 247 ± 4 | 274 ± 3 | 71.1 ± 29.7 |
| Coefficient of variation | 0.01 | 0.01 | 0.03 | 0.03 | 0.02 | 0.01 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.24 | -0.23 | 0.10 | 0.12 | 0.08 | -0.50 | - |
| Pearson p-value (two tailed) |
5.08E-01 | 5.28E-01 | 7.84E-01 | 7.50E-01 | 8.22E-01 | 1.44E-01 | - |
| Stats for ND2 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.9 - 46.6% | 53.4 - 56.1% | 335 - 357 | 115 - 138 | 224 - 241 | 330 - 350 | 27.0 - 118.0 |
| Median | 45.6% | 54.5% | 347 | 133 | 231 | 341 | 60.0 |
| Average ± stdev | 45.5 ± 0.9% | 54.5 ± 0.9% | 345 ± 6 | 130 ± 6 | 231 ± 5 | 338 ± 6 | 71.1 ± 29.7 |
| Coefficient of variation | 0.02 | 0.02 | 0.02 | 0.05 | 0.02 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.24 | -0.24 | 0.32 | 0.02 | -0.29 | -0.07 | - |
| Pearson p-value (two tailed) |
5.04E-01 | 5.04E-01 | 3.68E-01 | 9.62E-01 | 4.14E-01 | 8.58E-01 | - |
| Stats for ND3 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 46.7 - 49.3% | 50.7 - 53.3% | 106 - 111 | 55 - 63 | 96 - 101 | 80 - 88 | 27.0 - 118.0 |
| Median | 48.1% | 52.4% | 109 | 59 | 98 | 84 | 60.0 |
| Average ± stdev | 47.9 ± 0.8% | 52.1 ± 0.8% | 108 ± 1 | 58 ± 2 | 98 ± 1 | 83 ± 2 | 71.1 ± 29.7 |
| Coefficient of variation | 0.02 | 0.02 | 0.01 | 0.05 | 0.01 | 0.03 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.53 | -0.53 | 0.34 | 0.37 | -0.24 | -0.34 | - |
| Pearson p-value (two tailed) |
1.17E-01 | 1.17E-01 | 3.42E-01 | 2.96E-01 | 5.12E-01 | 3.40E-01 | - |
| Stats for ND4 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 45.5 - 47.3% | 52.7 - 54.5% | 423 - 439 | 198 - 216 | 334 - 350 | 391 - 411 | 27.0 - 118.0 |
| Median | 46.6% | 53.5% | 433 | 210 | 339 | 400 | 60.0 |
| Average ± stdev | 46.4 ± 0.6% | 53.6 ± 0.6% | 432 ± 4 | 208 ± 5 | 339 ± 4 | 400 ± 6 | 71.1 ± 29.7 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.03 | 0.01 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.15 | -0.15 | 0.05 | 0.15 | 0.05 | -0.19 | - |
| Pearson p-value (two tailed) |
6.85E-01 | 6.85E-01 | 8.86E-01 | 6.88E-01 | 8.81E-01 | 5.91E-01 | - |
| Stats for ND4L (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 49.2 - 52.2% | 47.8 - 50.8% | 104 - 110 | 41 - 47 | 72 - 77 | 70 - 75 | 27.0 - 118.0 |
| Median | 50.5% | 49.8% | 106 | 44 | 75 | 73 | 60.0 |
| Average ± stdev | 50.5 ± 1.1% | 49.5 ± 1.1% | 106 ± 1 | 43 ± 1 | 74 ± 1 | 72 ± 1 | 71.1 ± 29.7 |
| Coefficient of variation | 0.02 | 0.02 | 0.02 | 0.04 | 0.02 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.42 | 0.42 | -0.33 | -0.42 | 0.33 | 0.46 | - |
| Pearson p-value (two tailed) |
2.21E-01 | 2.21E-01 | 3.54E-01 | 2.29E-01 | 3.55E-01 | 1.85E-01 | - |
| Stats for ND5 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.5 - 45.5% | 54.4 - 55.5% | 585 - 619 | 220 - 244 | 429 - 455 | 553 - 574 | 27.0 - 118.0 |
| Median | 45.3% | 54.7% | 596 | 238 | 444 | 567 | 60.0 |
| Average ± stdev | 45.2 ± 0.4% | 54.8 ± 0.4% | 595 ± 8 | 236 ± 6 | 443 ± 7 | 566 ± 5 | 71.1 ± 29.7 |
| Coefficient of variation | 0.01 | 0.01 | 0.02 | 0.03 | 0.02 | 0.01 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.05 | 0.11 | -0.09 | 0.16 | 0.30 | -0.18 | - |
| Pearson p-value (two tailed) |
8.97E-01 | 7.70E-01 | 8.06E-01 | 6.67E-01 | 3.96E-01 | 6.19E-01 | - |
| Stats for ND6 (group size: 10 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 45.4 - 47.9% | 52.1 - 54.6% | 181 - 187 | 56 - 65 | 58 - 64 | 213 - 225 | 27.0 - 118.0 |
| Median | 47.3% | 52.9% | 185 | 63 | 60 | 214 | 60.0 |
| Average ± stdev | 47.1 ± 0.7% | 52.9 ± 0.7% | 184 ± 1 | 61 ± 3 | 60 ± 1 | 216 ± 3 | 71.1 ± 29.7 |
| Coefficient of variation | 0.02 | 0.01 | 0.01 | 0.05 | 0.03 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.09 | -0.09 | -0.26 | 0.17 | 0.22 | -0.27 | - |
| Pearson p-value (two tailed) |
8.09E-01 | 8.09E-01 | 4.69E-01 | 6.35E-01 | 5.33E-01 | 4.49E-01 | - |
| Stats for 12S rRNA gene (group size: 9 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 48.9 - 49.6% | 50.4 - 51.1% | 263 - 279 | 207 - 220 | 177 - 196 | 305 - 318 | 27.0 - 118.0 |
| Median | 49.3% | 50.7% | 266 | 208 | 180 | 307 | 60.0 |
| Average ± stdev | 49.3 ± 0.2% | 50.7 ± 0.2% | 267 ± 4 | 209 ± 3 | 181 ± 5 | 308 ± 3 | 73.9 ± 30.0 |
| Coefficient of variation | 0.00 | 0.00 | 0.02 | 0.02 | 0.03 | 0.01 | 0.41 |
| Pearson correlation coefficient with log10MLS |
-0.01 | 0.01 | 0.54 | 0.27 | 0.29 | 0.54 | - |
| Pearson p-value (two tailed) |
9.81E-01 | 9.81E-01 | 1.36E-01 | 4.81E-01 | 4.42E-01 | 1.32E-01 | - |
| Stats for 16S rRNA gene (group size: 9 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.0 - 44.6% | 55.1 - 56.0% | 413 - 427 | 332 - 338 | 332 - 341 | 597 - 616 | 27.0 - 118.0 |
| Median | 44.3% | 55.7% | 418 | 336 | 335 | 614 | 60.0 |
| Average ± stdev | 44.3 ± 0.2% | 55.7 ± 0.3% | 418 ± 3 | 335 ± 2 | 335 ± 2 | 611 ± 5 | 73.9 ± 30.0 |
| Coefficient of variation | 0.00 | 0.00 | 0.01 | 0.01 | 0.01 | 0.01 | 0.41 |
| Pearson correlation coefficient with log10MLS |
-0.11 | 0.43 | -0.57 | 0.73 | -0.81 | 0.58 | - |
| Pearson p-value (two tailed) |
7.82E-01 | 2.54E-01 | 1.13E-01 | 2.48E-02 | 8.22E-03 | 1.03E-01 | - |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
- How to cite us:
-
If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
-
Quick links:
- Terms of use
- User guide
- Frequent questions
- Glossary & definitions