Stats for order Gasterosteiformes
Browsing families:
| Stats for total mtDNA (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 39.7 - 47.4% | 52.6 - 60.3% | 4023 - 4746 | 2533 - 3071 | 4387 - 4721 | 4050 - 5252 | 1.0 - 8.0 |
| Median | 44.9% | 55.3% | 4632 | 2757 | 4612 | 4546 | 4.7 |
| Average ± stdev | 44.2 ± 2.7% | 55.8 ± 2.7% | 4466 ± 244 | 2759 ± 166 | 4561 ± 117 | 4559 ± 379 | 4.0 ± 2.3 |
| Coefficient of variation | 0.06 | 0.05 | 0.05 | 0.06 | 0.03 | 0.08 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.38 | 0.38 | -0.49 | -0.66 | -0.47 | 0.31 | - |
| Pearson p-value (two tailed) |
4.52E-01 | 4.52E-01 | 3.23E-01 | 1.55E-01 | 3.42E-01 | 5.49E-01 | - |
| Stats for total protein-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 40.1 - 47.8% | 52.2 - 59.9% | 2947 - 3462 | 1625 - 1995 | 3229 - 3465 | 2515 - 3463 | 1.0 - 8.0 |
| Median | 44.7% | 56.1% | 3392 | 1745 | 3436 | 2970 | 4.7 |
| Average ± stdev | 44.2 ± 2.7% | 55.8 ± 2.7% | 3280 ± 177 | 1758 ± 120 | 3379 ± 80 | 2989 ± 278 | 4.0 ± 2.3 |
| Coefficient of variation | 0.06 | 0.05 | 0.05 | 0.07 | 0.02 | 0.09 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.45 | 0.45 | -0.34 | -0.54 | -0.36 | 0.55 | - |
| Pearson p-value (two tailed) |
3.75E-01 | 3.75E-01 | 5.12E-01 | 2.65E-01 | 4.89E-01 | 2.58E-01 | - |
| Stats for D-loop (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Stats for total tRNA-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 40.4 - 47.7% | 52.3 - 59.6% | 345 - 401 | 281 - 335 | 362 - 415 | 444 - 508 | 1.0 - 8.0 |
| Median | 47.0% | 53.2% | 399 | 333 | 365 | 457 | 4.7 |
| Average ± stdev | 45.8 ± 2.8% | 54.2 ± 2.8% | 387 ± 19 | 320 ± 18 | 373 ± 18 | 464 ± 21 | 4.0 ± 2.3 |
| Coefficient of variation | 0.06 | 0.05 | 0.05 | 0.06 | 0.05 | 0.05 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.23 | 0.23 | -0.26 | -0.16 | 0.24 | 0.25 | - |
| Pearson p-value (two tailed) |
6.60E-01 | 6.60E-01 | 6.24E-01 | 7.55E-01 | 6.43E-01 | 6.29E-01 | - |
| Stats for total rRNA-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 39.1 - 47.8% | 52.2 - 60.9% | 535 - 675 | 496 - 581 | 566 - 653 | 805 - 951 | 1.0 - 8.0 |
| Median | 46.0% | 54.2% | 644 | 566 | 583 | 853 | 4.7 |
| Average ± stdev | 44.9 ± 3.0% | 55.1 ± 3.0% | 627 ± 43 | 553 ± 27 | 589 ± 29 | 860 ± 45 | 4.0 ± 2.3 |
| Coefficient of variation | 0.07 | 0.05 | 0.07 | 0.05 | 0.05 | 0.05 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.36 | 0.36 | -0.36 | -0.31 | 0.42 | 0.33 | - |
| Pearson p-value (two tailed) |
4.86E-01 | 4.86E-01 | 4.82E-01 | 5.57E-01 | 4.08E-01 | 5.20E-01 | - |
| Stats for ATP6 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 39.2 - 44.7% | 55.3 - 60.8% | 187 - 214 | 81 - 102 | 207 - 230 | 148 - 203 | 1.0 - 8.0 |
| Median | 44.0% | 57.5% | 203 | 91 | 219 | 176 | 4.7 |
| Average ± stdev | 42.6 ± 2.2% | 57.4 ± 2.2% | 200 ± 9 | 91 ± 6 | 217 ± 7 | 175 ± 16 | 4.0 ± 2.3 |
| Coefficient of variation | 0.05 | 0.04 | 0.05 | 0.07 | 0.04 | 0.09 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.26 | 0.26 | -0.06 | -0.48 | -0.62 | 0.52 | - |
| Pearson p-value (two tailed) |
6.16E-01 | 6.16E-01 | 9.11E-01 | 3.33E-01 | 1.86E-01 | 2.90E-01 | - |
| Stats for ATP8 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 33.9 - 50.0% | 50.0 - 66.1% | 42 - 60 | 14 - 24 | 45 - 57 | 39 - 65 | 1.0 - 8.0 |
| Median | 41.1% | 58.9% | 52 | 23 | 46 | 53 | 4.7 |
| Average ± stdev | 41.0 ± 6.2% | 59.0 ± 6.2% | 49 ± 6 | 19 ± 4 | 48 ± 4 | 50 ± 8 | 4.0 ± 2.3 |
| Coefficient of variation | 0.15 | 0.10 | 0.12 | 0.21 | 0.09 | 0.16 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.36 | 0.36 | -0.57 | 0.03 | 0.12 | 0.35 | - |
| Pearson p-value (two tailed) |
4.88E-01 | 4.88E-01 | 2.37E-01 | 9.50E-01 | 8.16E-01 | 5.00E-01 | - |
| Stats for COX1 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 41.4 - 46.6% | 53.4 - 58.6% | 368 - 437 | 276 - 289 | 455 - 497 | 351 - 416 | 1.0 - 8.0 |
| Median | 45.3% | 56.0% | 414 | 281 | 490 | 379 | 4.7 |
| Average ± stdev | 44.6 ± 1.9% | 55.4 ± 1.9% | 409 ± 23 | 281 ± 4 | 479 ± 16 | 380 ± 19 | 4.0 ± 2.3 |
| Coefficient of variation | 0.04 | 0.03 | 0.06 | 0.02 | 0.03 | 0.05 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.22 | 0.22 | -0.16 | -0.45 | -0.25 | 0.53 | - |
| Pearson p-value (two tailed) |
6.75E-01 | 6.75E-01 | 7.60E-01 | 3.70E-01 | 6.34E-01 | 2.82E-01 | - |
| Stats for COX2 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 39.2 - 47.2% | 52.8 - 60.8% | 160 - 194 | 106 - 132 | 191 - 208 | 174 - 217 | 1.0 - 8.0 |
| Median | 42.4% | 58.0% | 184 | 111 | 201 | 200 | 4.7 |
| Average ± stdev | 42.7 ± 2.7% | 57.3 ± 2.7% | 182 ± 11 | 113 ± 8 | 198 ± 6 | 197 ± 12 | 4.0 ± 2.3 |
| Coefficient of variation | 0.06 | 0.05 | 0.06 | 0.08 | 0.03 | 0.06 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.59 | 0.59 | -0.34 | -0.68 | 0.01 | 0.77 | - |
| Pearson p-value (two tailed) |
2.21E-01 | 2.21E-01 | 5.11E-01 | 1.33E-01 | 9.88E-01 | 7.37E-02 | - |
| Stats for COX3 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 42.2 - 51.2% | 48.8 - 57.8% | 200 - 250 | 131 - 152 | 213 - 246 | 160 - 211 | 1.0 - 8.0 |
| Median | 47.6% | 54.2% | 238 | 135 | 239 | 187 | 4.7 |
| Average ± stdev | 46.6 ± 3.1% | 53.4 ± 3.1% | 229 ± 17 | 136 ± 7 | 232 ± 11 | 187 ± 15 | 4.0 ± 2.3 |
| Coefficient of variation | 0.07 | 0.06 | 0.07 | 0.05 | 0.05 | 0.08 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.68 | 0.68 | -0.56 | -0.75 | 0.33 | 0.72 | - |
| Pearson p-value (two tailed) |
1.38E-01 | 1.38E-01 | 2.48E-01 | 8.47E-02 | 5.21E-01 | 1.07E-01 | - |
| Stats for CYTB (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 40.8 - 47.1% | 52.9 - 59.2% | 294 - 352 | 165 - 195 | 321 - 366 | 244 - 323 | 1.0 - 8.0 |
| Median | 45.0% | 56.7% | 337 | 176 | 358 | 284 | 4.7 |
| Average ± stdev | 44.4 ± 2.4% | 55.6 ± 2.4% | 329 ± 18 | 177 ± 9 | 351 ± 14 | 283 ± 22 | 4.0 ± 2.3 |
| Coefficient of variation | 0.06 | 0.04 | 0.06 | 0.06 | 0.04 | 0.08 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.45 | 0.45 | -0.35 | -0.51 | -0.22 | 0.64 | - |
| Pearson p-value (two tailed) |
3.70E-01 | 3.70E-01 | 5.00E-01 | 3.06E-01 | 6.78E-01 | 1.75E-01 | - |
| Stats for ND1 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 40.4 - 48.3% | 51.7 - 59.6% | 259 - 302 | 135 - 169 | 276 - 314 | 190 - 305 | 1.0 - 8.0 |
| Median | 43.7% | 56.5% | 289 | 145 | 314 | 238 | 4.7 |
| Average ± stdev | 44.1 ± 2.9% | 55.9 ± 2.9% | 282 ± 13 | 147 ± 13 | 305 ± 13 | 239 ± 34 | 4.0 ± 2.3 |
| Coefficient of variation | 0.06 | 0.05 | 0.05 | 0.09 | 0.05 | 0.15 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.46 | 0.46 | -0.49 | -0.38 | -0.36 | 0.48 | - |
| Pearson p-value (two tailed) |
3.54E-01 | 3.54E-01 | 3.22E-01 | 4.53E-01 | 4.90E-01 | 3.35E-01 | - |
| Stats for ND2 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 41.4 - 49.4% | 50.6 - 58.6% | 299 - 351 | 130 - 166 | 278 - 314 | 216 - 331 | 1.0 - 8.0 |
| Median | 45.3% | 55.0% | 340 | 132 | 298 | 280 | 4.7 |
| Average ± stdev | 44.7 ± 2.8% | 55.3 ± 2.8% | 329 ± 18 | 138 ± 12 | 298 ± 12 | 278 ± 33 | 4.0 ± 2.3 |
| Coefficient of variation | 0.06 | 0.05 | 0.06 | 0.09 | 0.04 | 0.12 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.48 | 0.48 | -0.23 | -0.71 | -0.73 | 0.63 | - |
| Pearson p-value (two tailed) |
3.38E-01 | 3.38E-01 | 6.55E-01 | 1.15E-01 | 9.85E-02 | 1.83E-01 | - |
| Stats for ND3 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 40.1 - 49.6% | 50.4 - 59.9% | 88 - 116 | 50 - 69 | 101 - 118 | 61 - 91 | 1.0 - 8.0 |
| Median | 47.3% | 53.3% | 107 | 58 | 109 | 80 | 4.7 |
| Average ± stdev | 46.6 ± 3.4% | 53.4 ± 3.4% | 105 ± 9 | 57 ± 6 | 108 ± 6 | 78 ± 9 | 4.0 ± 2.3 |
| Coefficient of variation | 0.07 | 0.06 | 0.09 | 0.11 | 0.06 | 0.12 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.39 | 0.39 | -0.13 | -0.51 | -0.15 | 0.57 | - |
| Pearson p-value (two tailed) |
4.44E-01 | 4.44E-01 | 8.09E-01 | 3.00E-01 | 7.80E-01 | 2.38E-01 | - |
| Stats for ND4 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 39.8 - 47.1% | 52.9 - 60.2% | 370 - 415 | 179 - 235 | 399 - 425 | 307 - 416 | 1.0 - 8.0 |
| Median | 44.5% | 55.9% | 405 | 213 | 416 | 369 | 4.7 |
| Average ± stdev | 43.6 ± 2.6% | 56.4 ± 2.6% | 396 ± 16 | 205 ± 17 | 412 ± 10 | 366 ± 32 | 4.0 ± 2.3 |
| Coefficient of variation | 0.06 | 0.05 | 0.04 | 0.09 | 0.02 | 0.09 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.35 | 0.35 | -0.27 | -0.39 | -0.69 | 0.56 | - |
| Pearson p-value (two tailed) |
4.99E-01 | 4.99E-01 | 6.07E-01 | 4.46E-01 | 1.26E-01 | 2.43E-01 | - |
| Stats for ND4L (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.8 - 51.9% | 48.1 - 55.2% | 90 - 101 | 41 - 53 | 81 - 96 | 52 - 83 | 1.0 - 8.0 |
| Median | 47.1% | 53.5% | 92 | 49 | 93 | 66 | 4.7 |
| Average ± stdev | 47.6 ± 2.7% | 52.4 ± 2.7% | 94 ± 4 | 47 ± 3 | 90 ± 4 | 65 ± 9 | 4.0 ± 2.3 |
| Coefficient of variation | 0.06 | 0.05 | 0.04 | 0.08 | 0.05 | 0.14 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.47 | 0.47 | -0.53 | -0.35 | -0.25 | 0.52 | - |
| Pearson p-value (two tailed) |
3.44E-01 | 3.44E-01 | 2.82E-01 | 4.94E-01 | 6.32E-01 | 2.95E-01 | - |
| Stats for ND5 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.7 - 47.1% | 52.9 - 62.3% | 449 - 556 | 243 - 310 | 534 - 578 | 424 - 587 | 1.0 - 8.0 |
| Median | 43.4% | 57.3% | 531 | 268 | 557 | 486 | 4.7 |
| Average ± stdev | 42.5 ± 3.4% | 57.5 ± 3.4% | 512 ± 36 | 269 ± 22 | 557 ± 14 | 498 ± 50 | 4.0 ± 2.3 |
| Coefficient of variation | 0.08 | 0.06 | 0.07 | 0.08 | 0.03 | 0.10 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.38 | 0.38 | -0.27 | -0.53 | 0.08 | 0.40 | - |
| Pearson p-value (two tailed) |
4.55E-01 | 4.55E-01 | 6.06E-01 | 2.75E-01 | 8.79E-01 | 4.26E-01 | - |
| Stats for ND6 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 38.3 - 52.5% | 47.5 - 61.7% | 140 - 173 | 60 - 101 | 78 - 96 | 158 - 226 | 1.0 - 8.0 |
| Median | 46.6% | 54.0% | 167 | 78 | 88 | 202 | 4.7 |
| Average ± stdev | 45.7 ± 4.6% | 54.3 ± 4.6% | 162 ± 10 | 76 ± 12 | 85 ± 6 | 197 ± 21 | 4.0 ± 2.3 |
| Coefficient of variation | 0.10 | 0.08 | 0.07 | 0.17 | 0.07 | 0.11 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.51 | 0.51 | -0.37 | -0.56 | 0.13 | 0.48 | - |
| Pearson p-value (two tailed) |
3.05E-01 | 3.05E-01 | 4.69E-01 | 2.52E-01 | 8.01E-01 | 3.33E-01 | - |
| Stats for 12S rRNA gene (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 41.2 - 49.3% | 50.7 - 58.8% | 206 - 248 | 180 - 216 | 196 - 234 | 279 - 318 | 1.0 - 8.0 |
| Median | 47.5% | 52.8% | 240 | 209 | 199 | 301 | 4.7 |
| Average ± stdev | 46.5 ± 2.8% | 53.5 ± 2.8% | 234 ± 13 | 204 ± 11 | 204 ± 13 | 299 ± 12 | 4.0 ± 2.3 |
| Coefficient of variation | 0.06 | 0.05 | 0.06 | 0.06 | 0.07 | 0.04 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.36 | 0.36 | -0.35 | -0.31 | 0.34 | 0.35 | - |
| Pearson p-value (two tailed) |
4.85E-01 | 4.85E-01 | 4.93E-01 | 5.46E-01 | 5.12E-01 | 5.02E-01 | - |
| Stats for 16S rRNA gene (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 38.0 - 47.0% | 53.0 - 62.0% | 329 - 427 | 316 - 365 | 367 - 419 | 526 - 633 | 1.0 - 8.0 |
| Median | 45.1% | 55.1% | 404 | 357 | 387 | 558 | 4.7 |
| Average ± stdev | 44.0 ± 3.1% | 56.0 ± 3.1% | 392 ± 30 | 349 ± 15 | 385 ± 17 | 560 ± 34 | 4.0 ± 2.3 |
| Coefficient of variation | 0.07 | 0.06 | 0.08 | 0.05 | 0.04 | 0.06 | 0.58 |
| Pearson correlation coefficient with log10MLS |
-0.36 | 0.36 | -0.36 | -0.30 | 0.46 | 0.31 | - |
| Pearson p-value (two tailed) |
4.86E-01 | 4.86E-01 | 4.77E-01 | 5.65E-01 | 3.60E-01 | 5.47E-01 | - |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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