Viewing data for Hypoptychus dybowskii


Scientific name Hypoptychus dybowskii
Common name Korean sandeel
Maximum lifespan 1.00 years (Hypoptychus dybowskii@AnAge)

Total mtDNA (size: 16479 bases) GC AT G C A T
Base content (bases) 7817 8662 4746 3071 4612 4050
Base content per 1 kb (bases) 474 526 288 186 280 246
Base content (%) 47.4% 52.6%
Total protein-coding genes (size: 11408 bases) GC AT G C A T
Base content (bases) 5457 5951 3462 1995 3436 2515
Base content per 1 kb (bases) 478 522 303 175 301 220
Base content (%) 47.8% 52.2%
D-loop (size: 838 bases) GC AT G C A T
Base content (bases) 331 507 188 143 238 269
Base content per 1 kb (bases) 395 605 224 171 284 321
Base content (%) 39.5% 60.5%
Total tRNA-coding genes (size: 1542 bases) GC AT G C A T
Base content (bases) 736 806 401 335 362 444
Base content per 1 kb (bases) 477 523 260 217 235 288
Base content (%) 47.7% 52.3%
Total rRNA-coding genes (size: 2627 bases) GC AT G C A T
Base content (bases) 1256 1371 675 581 566 805
Base content per 1 kb (bases) 478 522 257 221 215 306
Base content (%) 47.8% 52.2%
12S rRNA gene (size: 942 bases) GC AT G C A T
Base content (bases) 464 478 248 216 199 279
Base content per 1 kb (bases) 493 507 263 229 211 296
Base content (%) 49.3% 50.7%
16S rRNA gene (size: 1685 bases) GC AT G C A T
Base content (bases) 792 893 427 365 367 526
Base content per 1 kb (bases) 470 530 253 217 218 312
Base content (%) 47.0% 53.0%

ATP6 (size: 683 bases) GC AT G C A T
Base content (bases) 305 378 203 102 230 148
Base content per 1 kb (bases) 447 553 297 149 337 217
Base content (%) 44.7% 55.3%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 84 84 60 24 45 39
Base content per 1 kb (bases) 500 500 357 143 268 232
Base content (%) 50.0% 50.0%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 703 848 414 289 497 351
Base content per 1 kb (bases) 453 547 267 186 320 226
Base content (%) 45.3% 54.7%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 326 365 194 132 191 174
Base content per 1 kb (bases) 472 528 281 191 276 252
Base content (%) 47.2% 52.8%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 402 383 250 152 223 160
Base content per 1 kb (bases) 512 488 318 194 284 204
Base content (%) 51.2% 48.8%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 537 604 342 195 360 244
Base content per 1 kb (bases) 471 529 300 171 316 214
Base content (%) 47.1% 52.9%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 471 504 302 169 314 190
Base content per 1 kb (bases) 483 517 310 173 322 195
Base content (%) 48.3% 51.7%
ND2 (size: 1047 bases) GC AT G C A T
Base content (bases) 517 530 351 166 314 216
Base content per 1 kb (bases) 494 506 335 159 300 206
Base content (%) 49.4% 50.6%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 173 176 104 69 115 61
Base content per 1 kb (bases) 496 504 298 198 330 175
Base content (%) 49.6% 50.4%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 650 731 415 235 424 307
Base content per 1 kb (bases) 471 529 301 170 307 222
Base content (%) 47.1% 52.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 154 143 101 53 91 52
Base content per 1 kb (bases) 519 481 340 178 306 175
Base content (%) 51.9% 48.1%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 866 973 556 310 549 424
Base content per 1 kb (bases) 471 529 302 169 299 231
Base content (%) 47.1% 52.9%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 274 248 173 101 90 158
Base content per 1 kb (bases) 525 475 331 193 172 303
Base content (%) 52.5% 47.5%

ATP6 (size: 683 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (5.31%)
Alanine (Ala, A)
n = 20 (8.85%)
Serine (Ser, S)
n = 6 (2.65%)
Threonine (Thr, T)
n = 24 (10.62%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (6.19%)
Leucine (Leu, L)
n = 51 (22.57%)
Isoleucine (Ile, I)
n = 20 (8.85%)
Methionine (Met, M)
n = 7 (3.1%)
Proline (Pro, P)
n = 17 (7.52%)
Phenylalanine (Phe, F)
n = 15 (6.64%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 8 (3.54%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 4 (1.77%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 5 3 20 7 7 2 10 7 2 5 5 2 2 12 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 5 11 4 0 6 3 1 2 7 5 3 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 7 1 2 0 0 0 0 4 1 2 2 5 0 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 1 1 0 1 0 1 2 2 1 0 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 72 64 40
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 63 30 107
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 68 53 82
ATP8 (size: 168 bases)
Amino acid sequence: MPQLDPSPWFAMLVFSWLVFLAIIPPKVMAHTFSNEPTLQSTDKRLANPWIWPWP*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 4 (7.27%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 3 (5.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 2 (3.64%)
Glutamic acid (Glu, E)
n = 1 (1.82%)
Asparagine (Asn, N)
n = 2 (3.64%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 1 (1.82%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 1 1 0 3 1 0 2 0 1 2 0 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 2 2 0 0 0 0 0 0 3 5 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 0 0 1 1 1 0 0 1 0 0 1 1 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 1 1 1 1 1 0 1 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
10 18 14 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 19 11 19
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 23 14 12
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 46 (8.91%)
Serine (Ser, S)
n = 31 (6.01%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 42 (8.14%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 40 (7.75%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 16 15 21 12 11 5 11 6 2 20 8 7 7 24 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 1 18 14 12 2 10 18 11 8 10 11 4 3 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 16 0 10 8 7 1 4 1 4 14 6 2 7 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 6 5 3 11 8 0 1 1 4 2 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
160 112 127 118
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 136 94 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 166 130 170
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.37%)
Alanine (Ala, A)
n = 19 (8.3%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 17 (7.42%)
Leucine (Leu, L)
n = 26 (11.35%)
Isoleucine (Ile, I)
n = 22 (9.61%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 13 (5.68%)
Asparagine (Asn, N)
n = 7 (3.06%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 7 (3.06%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 7 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 12 4 6 4 5 2 7 4 4 7 5 2 3 2 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 1 8 3 8 0 4 3 2 1 1 12 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 3 2 3 4 4 2 1 2 3 6 2 2 2 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 8 5 4 9 2 2 1 4 2 0 0 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 53 58 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 56 61 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 85 55 57
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (8.85%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 12 (4.62%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 6 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 5 4 10 7 9 1 4 6 3 5 8 3 1 10 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 8 6 7 0 3 14 2 4 2 10 1 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 5 2 4 4 2 1 1 2 3 6 6 0 0 1 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 6 4 0 5 0 2 1 2 1 2 0 0 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 72 50 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
46 69 53 93
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 109 56 66
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (7.92%)
Alanine (Ala, A)
n = 29 (7.65%)
Serine (Ser, S)
n = 24 (6.33%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 28 (7.39%)
Leucine (Leu, L)
n = 62 (16.36%)
Isoleucine (Ile, I)
n = 27 (7.12%)
Methionine (Met, M)
n = 10 (2.64%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 29 (7.65%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 10 4 16 20 11 4 6 5 2 12 10 4 2 13 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 3 9 11 8 1 10 12 1 7 3 8 9 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 5 1 10 8 5 0 0 1 6 9 1 5 4 14 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 2 3 3 8 7 2 1 0 4 3 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
103 98 86 93
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 94 76 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 150 82 110
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 36 (11.11%)
Serine (Ser, S)
n = 22 (6.79%)
Threonine (Thr, T)
n = 17 (5.25%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 18 (5.56%)
Leucine (Leu, L)
n = 61 (18.83%)
Isoleucine (Ile, I)
n = 29 (8.95%)
Methionine (Met, M)
n = 7 (2.16%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 20 (6.17%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 9 4 19 17 12 1 6 4 3 6 4 4 4 12 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 12 17 4 3 3 9 3 3 9 12 2 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 4 0 6 7 1 4 1 3 4 8 2 6 5 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 5 6 1 3 1 6 2 3 1 2 0 0 1 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 92 75 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 95 57 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 115 58 108
ND2 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 42 (12.07%)
Serine (Ser, S)
n = 29 (8.33%)
Threonine (Thr, T)
n = 35 (10.06%)
Cysteine (Cys, C)
n = 2 (0.57%)
Valine (Val, V)
n = 10 (2.87%)
Leucine (Leu, L)
n = 79 (22.7%)
Isoleucine (Ile, I)
n = 17 (4.89%)
Methionine (Met, M)
n = 13 (3.74%)
Proline (Pro, P)
n = 25 (7.18%)
Phenylalanine (Phe, F)
n = 15 (4.31%)
Tyrosine (Tyr, Y)
n = 6 (1.72%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 8 (2.3%)
Glutamine (Gln, Q)
n = 13 (3.74%)
Histidine (His, H)
n = 8 (2.3%)
Lysine (Lys, K)
n = 8 (2.3%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 7 8 26 16 13 5 13 7 6 5 1 1 3 10 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 9 18 14 1 3 9 2 4 8 8 6 3 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 3 3 8 12 2 2 1 4 2 4 7 6 4 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 3 1 1 0 3 5 2 1 1 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 110 86 78
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 126 49 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 115 81 102
ND3 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 42 (12.07%)
Serine (Ser, S)
n = 29 (8.33%)
Threonine (Thr, T)
n = 35 (10.06%)
Cysteine (Cys, C)
n = 2 (0.57%)
Valine (Val, V)
n = 10 (2.87%)
Leucine (Leu, L)
n = 79 (22.7%)
Isoleucine (Ile, I)
n = 17 (4.89%)
Methionine (Met, M)
n = 13 (3.74%)
Proline (Pro, P)
n = 25 (7.18%)
Phenylalanine (Phe, F)
n = 15 (4.31%)
Tyrosine (Tyr, Y)
n = 6 (1.72%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 8 (2.3%)
Glutamine (Gln, Q)
n = 13 (3.74%)
Histidine (His, H)
n = 8 (2.3%)
Lysine (Lys, K)
n = 8 (2.3%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 7 8 26 16 13 5 13 7 6 5 1 1 3 10 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 9 18 14 1 3 9 2 4 8 8 6 3 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 3 3 8 12 2 2 1 4 2 4 7 6 4 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 3 1 1 0 3 5 2 1 1 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 110 86 78
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 126 49 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 115 81 102
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (5.23%)
Alanine (Ala, A)
n = 38 (8.28%)
Serine (Ser, S)
n = 33 (7.19%)
Threonine (Thr, T)
n = 42 (9.15%)
Cysteine (Cys, C)
n = 6 (1.31%)
Valine (Val, V)
n = 22 (4.79%)
Leucine (Leu, L)
n = 94 (20.48%)
Isoleucine (Ile, I)
n = 36 (7.84%)
Methionine (Met, M)
n = 22 (4.79%)
Proline (Pro, P)
n = 26 (5.66%)
Phenylalanine (Phe, F)
n = 17 (3.7%)
Tyrosine (Tyr, Y)
n = 13 (2.83%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 7 (1.53%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 9 (1.96%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 19 11 27 25 17 9 9 6 4 8 7 4 3 11 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 2 4 13 8 13 4 10 12 1 1 9 11 5 1 18
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 9 3 6 9 3 1 5 9 5 8 7 7 1 8 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 6 4 1 6 6 4 5 2 2 2 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 137 133 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
73 125 71 191
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
61 153 103 143
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 1 (1.02%)
Methionine (Met, M)
n = 3 (3.06%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 1 9 4 5 2 1 1 2 2 0 0 0 4 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 4 9 1 0 0 2 3 1 1 0 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 2 1 2 3 2 1 1 0 0 0 0 3 0 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 0 2 2 0 0 0 0 1 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
26 32 16 25
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 32 16 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 37 20 28
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 34 (5.56%)
Alanine (Ala, A)
n = 53 (8.66%)
Serine (Ser, S)
n = 53 (8.66%)
Threonine (Thr, T)
n = 57 (9.31%)
Cysteine (Cys, C)
n = 7 (1.14%)
Valine (Val, V)
n = 33 (5.39%)
Leucine (Leu, L)
n = 93 (15.2%)
Isoleucine (Ile, I)
n = 47 (7.68%)
Methionine (Met, M)
n = 26 (4.25%)
Proline (Pro, P)
n = 30 (4.9%)
Phenylalanine (Phe, F)
n = 43 (7.03%)
Tyrosine (Tyr, Y)
n = 10 (1.63%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 13 (2.12%)
Glutamic acid (Glu, E)
n = 13 (2.12%)
Asparagine (Asn, N)
n = 22 (3.59%)
Glutamine (Gln, Q)
n = 18 (2.94%)
Histidine (His, H)
n = 16 (2.61%)
Lysine (Lys, K)
n = 19 (3.1%)
Arginine (Arg, R)
n = 11 (1.8%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 25 11 33 25 13 9 7 11 7 14 4 10 5 25 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
15 2 5 17 27 8 1 7 12 6 9 11 13 5 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
27 19 3 12 14 12 2 4 9 1 9 7 6 10 12 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 4 9 6 7 8 11 2 3 6 0 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
146 155 184 128
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
79 180 112 242
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
85 221 128 179
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.03%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 15 (8.67%)
Threonine (Thr, T)
n = 4 (2.31%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 22 (12.72%)
Leucine (Leu, L)
n = 28 (16.18%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 7 (4.05%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 7 (4.05%)
Tryptophan (Trp, W)
n = 4 (2.31%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 7 (4.05%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 2 (1.16%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 6 (3.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 3 3 4 7 2 8 0 2 6 4 6 6 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 6 3 7 3 2 3 5 16 0 0 3 4 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 1 4 1 3 2 2 3 4 3 3 4 1 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 5 1 1 0 0 2 0 2 2 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 32 20 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 40 22 69
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
54 29 48 43
Total protein-coding genes (size: 11429 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 254 (6.67%)
Alanine (Ala, A)
n = 350 (9.2%)
Serine (Ser, S)
n = 263 (6.91%)
Threonine (Thr, T)
n = 292 (7.67%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 233 (6.12%)
Leucine (Leu, L)
n = 645 (16.95%)
Isoleucine (Ile, I)
n = 263 (6.91%)
Methionine (Met, M)
n = 142 (3.73%)
Proline (Pro, P)
n = 224 (5.89%)
Phenylalanine (Phe, F)
n = 245 (6.44%)
Tyrosine (Tyr, Y)
n = 104 (2.73%)
Tryptophan (Trp, W)
n = 117 (3.07%)
Aspartic acid (Asp, D)
n = 79 (2.08%)
Glutamic acid (Glu, E)
n = 97 (2.55%)
Asparagine (Asn, N)
n = 107 (2.81%)
Glutamine (Gln, Q)
n = 99 (2.6%)
Histidine (His, H)
n = 106 (2.79%)
Lysine (Lys, K)
n = 71 (1.87%)
Arginine (Arg, R)
n = 80 (2.1%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
150 113 69 202 147 116 45 84 60 39 93 59 43 38 139 106
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
73 10 19 114 132 89 15 58 100 38 58 67 97 42 18 79
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
119 77 17 68 75 44 16 21 39 34 70 48 51 34 73 26
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
80 46 51 24 55 38 33 18 21 27 14 0 0 7 0 69
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1013 1019 935 840
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
540 1069 670 1528
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
516 1305 849 1137 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​y​p​o​p​t​y​c​h​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ d​y​b​o​w​s​k​i​i​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.