Stats for order Squamata
Browsing families:
Agamidae (4)
Amphisbaenidae (1)
Anguidae (1)
Boidae (1)
Chamaeleonidae (2)
Colubridae (2)
Corytophanidae (1)
Elapidae (6)
Eublepharidae (1)
Gekkonidae (4)
Helodermatidae (1)
Iguanidae (1)
Lacertidae (2)
Phyllodactylidae (1)
Polychrotidae (1)
Amphisbaenidae (1)
Anguidae (1)
Boidae (1)
Chamaeleonidae (2)
Colubridae (2)
Corytophanidae (1)
Elapidae (6)
Eublepharidae (1)
Gekkonidae (4)
Helodermatidae (1)
Iguanidae (1)
Lacertidae (2)
Phyllodactylidae (1)
Polychrotidae (1)
| Stats for total mtDNA (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 36.4 - 45.8% | 54.2 - 63.6% | 4076 - 8009 | 2019 - 3359 | 3741 - 5961 | 4883 - 8643 | 3.6 - 54.0 |
| Median | 41.4% | 58.6% | 4887 | 2242 | 4365 | 5645 | 14.6 |
| Average ± stdev | 41.2 ± 2.5% | 58.8 ± 2.5% | 4896 ± 580 | 2292 ± 225 | 4489 ± 431 | 5766 ± 600 | 17.8 ± 11.1 |
| Coefficient of variation | 0.06 | 0.04 | 0.12 | 0.10 | 0.10 | 0.10 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.34 | -0.34 | 0.17 | 0.15 | -0.18 | -0.13 | - |
| Pearson p-value (two tailed) |
2.88E-02 | 2.89E-02 | 2.82E-01 | 3.56E-01 | 2.53E-01 | 4.20E-01 | - |
| Stats for total protein-coding genes (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 35.2 - 46.5% | 53.5 - 64.8% | 2790 - 5108 | 1164 - 1775 | 2549 - 3597 | 3183 - 4862 | 3.6 - 54.0 |
| Median | 41.5% | 58.5% | 3315 | 1333 | 2856 | 3681 | 14.6 |
| Average ± stdev | 41.5 ± 2.8% | 58.5 ± 2.8% | 3369 ± 374 | 1360 ± 125 | 2932 ± 258 | 3728 ± 272 | 17.8 ± 11.1 |
| Coefficient of variation | 0.07 | 0.05 | 0.11 | 0.09 | 0.09 | 0.07 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.36 | -0.36 | 0.21 | 0.20 | -0.26 | -0.20 | - |
| Pearson p-value (two tailed) |
2.15E-02 | 2.15E-02 | 1.94E-01 | 2.06E-01 | 1.07E-01 | 2.04E-01 | - |
| Stats for D-loop (group size: 5 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Stats for total tRNA-coding genes (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.4 - 46.0% | 54.0 - 65.6% | 308 - 581 | 211 - 363 | 347 - 507 | 455 - 670 | 3.6 - 54.0 |
| Median | 41.4% | 58.6% | 364 | 249 | 369 | 488 | 14.6 |
| Average ± stdev | 41.6 ± 2.2% | 58.4 ± 2.2% | 372 ± 44 | 251 ± 23 | 378 ± 34 | 496 ± 37 | 17.8 ± 11.1 |
| Coefficient of variation | 0.05 | 0.04 | 0.12 | 0.09 | 0.09 | 0.08 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.07 | -0.07 | 0.05 | -0.04 | -0.04 | -0.04 | - |
| Pearson p-value (two tailed) |
6.82E-01 | 6.85E-01 | 7.53E-01 | 7.91E-01 | 8.00E-01 | 7.99E-01 | - |
| Stats for total rRNA-coding genes (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.3 - 47.8% | 52.2 - 62.7% | 514 - 1454 | 375 - 853 | 450 - 950 | 803 - 1747 | 3.6 - 54.0 |
| Median | 42.4% | 57.6% | 614 | 416 | 499 | 894 | 14.6 |
| Average ± stdev | 42.6 ± 2.5% | 57.4 ± 2.5% | 639 ± 138 | 428 ± 70 | 520 ± 78 | 911 ± 137 | 17.8 ± 11.1 |
| Coefficient of variation | 0.06 | 0.04 | 0.22 | 0.17 | 0.15 | 0.15 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.07 | -0.07 | 0.02 | -0.04 | -0.09 | -0.02 | - |
| Pearson p-value (two tailed) |
6.70E-01 | 6.70E-01 | 9.04E-01 | 7.88E-01 | 5.84E-01 | 9.07E-01 | - |
| Stats for ATP6 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 32.9 - 47.8% | 52.2 - 67.1% | 158 - 254 | 44 - 95 | 160 - 227 | 189 - 249 | 3.6 - 54.0 |
| Median | 40.1% | 59.9% | 207 | 71 | 182 | 223 | 14.6 |
| Average ± stdev | 40.3 ± 3.7% | 59.6 ± 3.7% | 205 ± 21 | 69 ± 8 | 185 ± 16 | 221 ± 16 | 17.8 ± 11.1 |
| Coefficient of variation | 0.09 | 0.06 | 0.11 | 0.12 | 0.09 | 0.07 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.21 | -0.21 | 0.18 | 0.20 | -0.11 | -0.17 | - |
| Pearson p-value (two tailed) |
1.87E-01 | 1.85E-01 | 2.61E-01 | 2.15E-01 | 5.03E-01 | 2.80E-01 | - |
| Stats for ATP8 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 26.7 - 46.7% | 53.3 - 73.3% | 29 - 66 | 7 - 23 | 26 - 62 | 48 - 83 | 3.6 - 54.0 |
| Median | 37.0% | 63.0% | 48 | 13 | 41 | 64 | 14.6 |
| Average ± stdev | 36.5 ± 5.5% | 63.5 ± 5.5% | 46 ± 8 | 13 ± 3 | 41 ± 7 | 63 ± 7 | 17.8 ± 11.1 |
| Coefficient of variation | 0.15 | 0.09 | 0.18 | 0.30 | 0.18 | 0.12 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.10 | -0.10 | 0.06 | 0.17 | -0.02 | -0.02 | - |
| Pearson p-value (two tailed) |
5.50E-01 | 5.50E-01 | 7.12E-01 | 2.88E-01 | 8.78E-01 | 9.16E-01 | - |
| Stats for COX1 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.6 - 47.8% | 52.2 - 62.4% | 345 - 485 | 216 - 292 | 382 - 528 | 383 - 505 | 3.6 - 54.0 |
| Median | 43.7% | 56.3% | 439 | 254 | 435 | 447 | 14.6 |
| Average ± stdev | 43.5 ± 2.6% | 56.5 ± 2.6% | 428 ± 36 | 253 ± 17 | 442 ± 35 | 445 ± 30 | 17.8 ± 11.1 |
| Coefficient of variation | 0.06 | 0.05 | 0.08 | 0.07 | 0.08 | 0.07 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.43 | -0.43 | 0.42 | 0.22 | -0.26 | -0.17 | - |
| Pearson p-value (two tailed) |
5.33E-03 | 5.22E-03 | 6.37E-03 | 1.57E-01 | 1.07E-01 | 2.89E-01 | - |
| Stats for COX2 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 35.8 - 48.4% | 51.6 - 64.2% | 161 - 222 | 79 - 125 | 145 - 209 | 198 - 252 | 3.6 - 54.0 |
| Median | 43.4% | 56.6% | 197 | 103 | 162 | 224 | 14.6 |
| Average ± stdev | 42.9 ± 3.0% | 57.1 ± 3.0% | 193 ± 15 | 100 ± 10 | 166 ± 15 | 225 ± 11 | 17.8 ± 11.1 |
| Coefficient of variation | 0.07 | 0.05 | 0.08 | 0.11 | 0.09 | 0.05 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.55 | -0.55 | 0.37 | 0.50 | -0.34 | -0.46 | - |
| Pearson p-value (two tailed) |
2.26E-04 | 2.28E-04 | 1.65E-02 | 8.02E-04 | 2.99E-02 | 2.54E-03 | - |
| Stats for COX3 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.4 - 49.2% | 50.8 - 62.6% | 185 - 257 | 105 - 156 | 185 - 243 | 207 - 262 | 3.6 - 54.0 |
| Median | 44.1% | 55.9% | 225 | 121 | 206 | 230 | 14.6 |
| Average ± stdev | 43.9 ± 2.8% | 56.1 ± 2.8% | 223 ± 17 | 120 ± 10 | 208 ± 15 | 231 ± 13 | 17.8 ± 11.1 |
| Coefficient of variation | 0.06 | 0.05 | 0.08 | 0.09 | 0.07 | 0.06 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.50 | -0.50 | 0.41 | 0.33 | -0.40 | -0.35 | - |
| Pearson p-value (two tailed) |
9.37E-04 | 9.70E-04 | 7.21E-03 | 3.56E-02 | 9.25E-03 | 2.51E-02 | - |
| Stats for CYTB (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 35.5 - 47.4% | 52.6 - 64.5% | 281 - 393 | 108 - 157 | 281 - 386 | 294 - 380 | 3.6 - 54.0 |
| Median | 41.7% | 58.3% | 338 | 133 | 310 | 340 | 14.6 |
| Average ± stdev | 41.8 ± 2.8% | 58.2 ± 2.8% | 338 ± 25 | 132 ± 13 | 314 ± 26 | 340 ± 18 | 17.8 ± 11.1 |
| Coefficient of variation | 0.07 | 0.05 | 0.08 | 0.10 | 0.09 | 0.06 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.27 | -0.27 | 0.26 | -0.02 | -0.27 | -0.20 | - |
| Pearson p-value (two tailed) |
8.62E-02 | 8.54E-02 | 9.86E-02 | 8.87E-01 | 9.02E-02 | 2.22E-01 | - |
| Stats for ND1 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 36.5 - 47.6% | 52.4 - 63.5% | 242 - 335 | 94 - 147 | 220 - 302 | 261 - 352 | 3.6 - 54.0 |
| Median | 42.0% | 58.0% | 294 | 114 | 250 | 311 | 14.6 |
| Average ± stdev | 41.9 ± 2.9% | 58.1 ± 2.9% | 289 ± 24 | 115 ± 11 | 251 ± 21 | 309 ± 21 | 17.8 ± 11.1 |
| Coefficient of variation | 0.07 | 0.05 | 0.09 | 0.10 | 0.08 | 0.07 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.42 | -0.42 | 0.45 | 0.03 | -0.37 | -0.21 | - |
| Pearson p-value (two tailed) |
6.16E-03 | 6.22E-03 | 3.05E-03 | 8.75E-01 | 1.88E-02 | 1.97E-01 | - |
| Stats for ND2 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 33.8 - 49.3% | 50.7 - 66.2% | 268 - 377 | 75 - 137 | 197 - 311 | 297 - 407 | 3.6 - 54.0 |
| Median | 40.6% | 59.4% | 321 | 94 | 237 | 372 | 14.6 |
| Average ± stdev | 40.6 ± 3.5% | 59.4 ± 3.5% | 322 ± 30 | 98 ± 13 | 244 ± 26 | 369 ± 25 | 17.8 ± 11.1 |
| Coefficient of variation | 0.09 | 0.06 | 0.10 | 0.13 | 0.11 | 0.07 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.35 | -0.35 | 0.34 | 0.15 | -0.40 | -0.09 | - |
| Pearson p-value (two tailed) |
2.54E-02 | 2.54E-02 | 2.90E-02 | 3.40E-01 | 9.15E-03 | 5.74E-01 | - |
| Stats for ND3 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 32.4 - 48.0% | 52.0 - 67.6% | 76 - 127 | 33 - 55 | 82 - 119 | 88 - 122 | 3.6 - 54.0 |
| Median | 42.0% | 58.0% | 103 | 41 | 94 | 108 | 14.6 |
| Average ± stdev | 41.6 ± 3.6% | 58.4 ± 3.6% | 101 ± 11 | 41 ± 6 | 95 ± 9 | 105 ± 9 | 17.8 ± 11.1 |
| Coefficient of variation | 0.09 | 0.06 | 0.11 | 0.15 | 0.10 | 0.09 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.30 | -0.30 | 0.23 | 0.09 | -0.32 | -0.14 | - |
| Pearson p-value (two tailed) |
5.90E-02 | 5.90E-02 | 1.49E-01 | 5.63E-01 | 4.09E-02 | 3.85E-01 | - |
| Stats for ND4 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.5 - 46.7% | 53.3 - 65.5% | 346 - 492 | 120 - 168 | 291 - 461 | 380 - 501 | 3.6 - 54.0 |
| Median | 41.2% | 58.8% | 417 | 138 | 343 | 446 | 14.6 |
| Average ± stdev | 41.1 ± 2.8% | 58.9 ± 2.8% | 416 ± 33 | 139 ± 11 | 353 ± 35 | 445 ± 27 | 17.8 ± 11.1 |
| Coefficient of variation | 0.07 | 0.05 | 0.08 | 0.08 | 0.10 | 0.06 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.37 | -0.37 | 0.32 | 0.11 | -0.23 | -0.30 | - |
| Pearson p-value (two tailed) |
1.58E-02 | 1.59E-02 | 4.03E-02 | 4.93E-01 | 1.52E-01 | 5.91E-02 | - |
| Stats for ND4L (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 32.4 - 45.7% | 54.3 - 67.6% | 65 - 108 | 24 - 43 | 65 - 103 | 75 - 115 | 3.6 - 54.0 |
| Median | 38.0% | 62.0% | 81 | 32 | 82 | 95 | 14.6 |
| Average ± stdev | 39.3 ± 3.6% | 60.7 ± 3.6% | 83 ± 10 | 32 ± 4 | 80 ± 8 | 96 ± 8 | 17.8 ± 11.1 |
| Coefficient of variation | 0.09 | 0.06 | 0.12 | 0.13 | 0.10 | 0.09 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.21 | -0.21 | 0.23 | -0.00 | 0.00 | -0.25 | - |
| Pearson p-value (two tailed) |
1.84E-01 | 1.84E-01 | 1.53E-01 | 9.94E-01 | 9.78E-01 | 1.10E-01 | - |
| Stats for ND5 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 32.0 - 45.6% | 54.4 - 68.0% | 415 - 627 | 151 - 249 | 387 - 552 | 546 - 725 | 3.6 - 54.0 |
| Median | 40.0% | 60.0% | 531 | 185 | 443 | 616 | 14.6 |
| Average ± stdev | 40.0 ± 3.1% | 60.0 ± 3.1% | 529 ± 44 | 187 ± 21 | 455 ± 41 | 621 ± 39 | 17.8 ± 11.1 |
| Coefficient of variation | 0.08 | 0.05 | 0.08 | 0.11 | 0.09 | 0.06 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.24 | -0.24 | 0.25 | 0.09 | -0.30 | -0.05 | - |
| Pearson p-value (two tailed) |
1.25E-01 | 1.25E-01 | 1.19E-01 | 5.70E-01 | 5.65E-02 | 7.42E-01 | - |
| Stats for ND6 (group size: 41 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 31.7 - 49.0% | 51.0 - 68.3% | 64 - 214 | 27 - 163 | 43 - 217 | 78 - 259 | 3.6 - 54.0 |
| Median | 40.1% | 59.9% | 161 | 43 | 74 | 234 | 14.6 |
| Average ± stdev | 40.3 ± 3.8% | 59.7 ± 3.8% | 160 ± 23 | 46 ± 20 | 76 ± 25 | 230 ± 26 | 17.8 ± 11.1 |
| Coefficient of variation | 0.10 | 0.06 | 0.15 | 0.45 | 0.33 | 0.12 | 0.62 |
| Pearson correlation coefficient with log10MLS |
0.04 | -0.04 | -0.21 | 0.28 | 0.32 | -0.33 | - |
| Pearson p-value (two tailed) |
7.92E-01 | 7.92E-01 | 1.77E-01 | 7.19E-02 | 4.28E-02 | 3.60E-02 | - |
| Stats for 12S rRNA gene (group size: 39 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.9 - 51.3% | 48.7 - 62.1% | 199 - 296 | 153 - 205 | 152 - 238 | 278 - 370 | 3.6 - 54.0 |
| Median | 43.5% | 56.5% | 236 | 168 | 189 | 334 | 14.0 |
| Average ± stdev | 44.2 ± 3.2% | 55.8 ± 3.2% | 242 ± 23 | 168 ± 11 | 189 ± 19 | 328 ± 19 | 17.3 ± 11.1 |
| Coefficient of variation | 0.07 | 0.06 | 0.10 | 0.07 | 0.10 | 0.06 | 0.64 |
| Pearson correlation coefficient with log10MLS |
0.10 | -0.10 | 0.22 | 0.03 | -0.16 | 0.18 | - |
| Pearson p-value (two tailed) |
5.43E-01 | 5.43E-01 | 1.83E-01 | 8.70E-01 | 3.32E-01 | 2.86E-01 | - |
| Stats for 16S rRNA gene (group size: 40 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 36.9 - 47.1% | 52.9 - 63.1% | 315 - 467 | 227 - 288 | 275 - 381 | 522 - 631 | 3.6 - 54.0 |
| Median | 41.9% | 58.4% | 379 | 250 | 315 | 561 | 14.6 |
| Average ± stdev | 41.6 ± 2.5% | 58.4 ± 2.5% | 380 ± 34 | 250 ± 13 | 320 ± 23 | 563 ± 22 | 17.5 ± 11.1 |
| Coefficient of variation | 0.06 | 0.04 | 0.09 | 0.06 | 0.07 | 0.04 | 0.63 |
| Pearson correlation coefficient with log10MLS |
0.04 | -0.04 | 0.07 | -0.03 | -0.03 | -0.01 | - |
| Pearson p-value (two tailed) |
7.95E-01 | 7.94E-01 | 6.60E-01 | 8.53E-01 | 8.37E-01 | 9.75E-01 | - |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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