Stats for family Colubridae
Species in family:
| Stats for total mtDNA (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 41.0 | 59.0 | 4818 | 2242 | 4353 | 5790 | 12.2 |
| Nerodia sipedon | 41.8 | 58.2 | 5098 | 2310 | 4346 | 5952 | 9.6 |
| Stats for total protein-coding genes (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 41.0 | 59.0 | 3315 | 1297 | 2803 | 3846 | 12.2 |
| Nerodia sipedon | 42.2 | 57.8 | 3435 | 1322 | 2665 | 3851 | 9.6 |
| Stats for D-loop (group size: 0 species) | |||||||
|---|---|---|---|---|---|---|---|
| There is no data for D-loop in this group. |
| Stats for total tRNA-coding genes (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 41.7 | 58.3 | 354 | 242 | 361 | 472 | 12.2 |
| Nerodia sipedon | 41.4 | 58.6 | 352 | 236 | 351 | 480 | 9.6 |
| Stats for total rRNA-coding genes (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 41.7 | 58.3 | 600 | 406 | 500 | 908 | 12.2 |
| Nerodia sipedon | 41.8 | 58.2 | 614 | 385 | 491 | 900 | 9.6 |
| Stats for ATP6 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 41.6 | 58.4 | 212 | 71 | 163 | 235 | 12.2 |
| Nerodia sipedon | 41.9 | 58.1 | 211 | 74 | 173 | 223 | 9.6 |
| Stats for ATP8 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 29.7 | 70.3 | 36 | 13 | 52 | 64 | 12.2 |
| Nerodia sipedon | 37.6 | 62.4 | 46 | 16 | 38 | 65 | 9.6 |
| Stats for COX1 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 41.9 | 58.1 | 420 | 252 | 451 | 479 | 12.2 |
| Nerodia sipedon | 44.0 | 56.0 | 445 | 264 | 431 | 471 | 9.6 |
| Stats for COX2 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 43.5 | 56.5 | 191 | 107 | 162 | 225 | 12.2 |
| Nerodia sipedon | 45.1 | 54.9 | 200 | 109 | 153 | 223 | 9.6 |
| Stats for COX3 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 41.8 | 58.2 | 206 | 122 | 202 | 254 | 12.2 |
| Nerodia sipedon | 45.2 | 54.8 | 227 | 127 | 185 | 245 | 9.6 |
| Stats for CYTB (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 42.6 | 57.4 | 355 | 119 | 295 | 344 | 12.2 |
| Nerodia sipedon | 41.1 | 58.9 | 335 | 124 | 303 | 355 | 9.6 |
| Stats for ND1 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 41.8 | 58.2 | 297 | 106 | 240 | 321 | 12.2 |
| Nerodia sipedon | 44.1 | 55.9 | 319 | 106 | 222 | 317 | 9.6 |
| Stats for ND2 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 40.1 | 59.9 | 321 | 92 | 235 | 382 | 12.2 |
| Nerodia sipedon | 40.1 | 59.9 | 330 | 84 | 212 | 406 | 9.6 |
| Stats for ND3 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 40.5 | 59.5 | 103 | 36 | 87 | 117 | 12.2 |
| Nerodia sipedon | 42.9 | 57.1 | 113 | 34 | 84 | 112 | 9.6 |
| Stats for ND4 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 41.2 | 58.8 | 417 | 134 | 334 | 452 | 12.2 |
| Nerodia sipedon | 42.3 | 57.7 | 432 | 133 | 314 | 458 | 9.6 |
| Stats for ND4L (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 37.1 | 62.9 | 76 | 32 | 86 | 97 | 12.2 |
| Nerodia sipedon | 39.9 | 60.1 | 78 | 38 | 76 | 99 | 9.6 |
| Stats for ND5 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 39.7 | 60.3 | 519 | 185 | 429 | 640 | 12.2 |
| Nerodia sipedon | 41.0 | 59.0 | 545 | 181 | 402 | 642 | 9.6 |
| Stats for ND6 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 38.0 | 62.0 | 165 | 29 | 71 | 245 | 12.2 |
| Nerodia sipedon | 37.3 | 62.7 | 157 | 33 | 75 | 245 | 9.6 |
| Stats for 12S rRNA gene (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 44.1 | 55.9 | 242 | 168 | 184 | 336 | 12.2 |
| Nerodia sipedon | 43.8 | 56.2 | 253 | 157 | 184 | 343 | 9.6 |
| Stats for 16S rRNA gene (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Hypsiglena torquata | 40.2 | 59.8 | 358 | 238 | 316 | 572 | 12.2 |
| Nerodia sipedon | 40.5 | 59.5 | 361 | 228 | 307 | 557 | 9.6 |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
- How to cite us:
-
If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
-
Quick links:
- Terms of use
- User guide
- Frequent questions
- Glossary & definitions