Stats for family Plethodontidae
Species in family:
| Stats for total mtDNA (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 33.7 - 37.6% | 62.4 - 66.3% | 3423 - 4757 | 2069 - 2571 | 4687 - 5959 | 5615 - 6748 | 8.9 - 25.0 |
| Median | 36.5% | 63.8% | 4038 | 2467 | 5186 | 5916 | 19.7 |
| Average ± stdev | 36.1 ± 1.3% | 63.9 ± 1.3% | 4023 ± 426 | 2354 ± 182 | 5252 ± 434 | 6021 ± 392 | 17.6 ± 5.2 |
| Coefficient of variation | 0.04 | 0.02 | 0.11 | 0.08 | 0.08 | 0.07 | 0.29 |
| Pearson correlation coefficient with log10MLS |
-0.15 | 0.15 | 0.27 | -0.46 | 0.14 | 0.19 | - |
| Pearson p-value (two tailed) |
7.70E-01 | 7.72E-01 | 5.99E-01 | 3.58E-01 | 7.88E-01 | 7.20E-01 | - |
| Stats for total protein-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 33.1 - 37.5% | 62.5 - 66.9% | 2431 - 2851 | 1316 - 1516 | 3343 - 3796 | 3626 - 3788 | 8.9 - 25.0 |
| Median | 36.2% | 64.3% | 2691 | 1392 | 3546 | 3735 | 19.7 |
| Average ± stdev | 35.9 ± 1.6% | 64.1 ± 1.6% | 2676 ± 146 | 1393 ± 62 | 3546 ± 135 | 3725 ± 52 | 17.6 ± 5.2 |
| Coefficient of variation | 0.04 | 0.02 | 0.05 | 0.04 | 0.04 | 0.01 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.02 | -0.02 | 0.33 | -0.60 | 0.12 | -0.14 | - |
| Pearson p-value (two tailed) |
9.66E-01 | 9.67E-01 | 5.17E-01 | 2.08E-01 | 8.16E-01 | 7.99E-01 | - |
| Stats for D-loop (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 28.6 - 36.8% | 63.2 - 71.4% | 150 - 843 | 105 - 419 | 240 - 1116 | 239 - 1317 | 8.9 - 25.0 |
| Median | 35.1% | 65.8% | 164 | 116 | 358 | 307 | 19.7 |
| Average ± stdev | 34.1 ± 2.9% | 65.9 ± 2.9% | 326 ± 260 | 191 ± 120 | 478 ± 318 | 507 ± 393 | 17.6 ± 5.2 |
| Coefficient of variation | 0.09 | 0.04 | 0.80 | 0.63 | 0.67 | 0.78 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.61 | -0.61 | 0.39 | 0.32 | 0.29 | 0.37 | - |
| Pearson p-value (two tailed) |
1.99E-01 | 1.99E-01 | 4.43E-01 | 5.32E-01 | 5.71E-01 | 4.71E-01 | - |
| Stats for total tRNA-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.8 - 38.5% | 61.5 - 65.2% | 316 - 346 | 216 - 242 | 407 - 446 | 524 - 553 | 8.9 - 25.0 |
| Median | 37.1% | 64.1% | 331 | 231 | 432 | 543 | 19.7 |
| Average ± stdev | 36.6 ± 1.3% | 63.4 ± 1.3% | 328 ± 9 | 228 ± 7 | 427 ± 11 | 539 ± 10 | 17.6 ± 5.2 |
| Coefficient of variation | 0.04 | 0.02 | 0.03 | 0.03 | 0.03 | 0.02 | 0.29 |
| Pearson correlation coefficient with log10MLS |
-0.33 | 0.33 | -0.13 | -0.31 | 0.28 | 0.66 | - |
| Pearson p-value (two tailed) |
5.18E-01 | 5.18E-01 | 8.13E-01 | 5.45E-01 | 5.85E-01 | 1.55E-01 | - |
| Stats for total rRNA-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.5 - 39.8% | 60.2 - 65.4% | 461 - 545 | 393 - 432 | 545 - 652 | 892 - 965 | 8.9 - 25.0 |
| Median | 38.0% | 62.2% | 512 | 420 | 581 | 937 | 19.7 |
| Average ± stdev | 37.6 ± 1.7% | 62.4 ± 1.7% | 503 ± 26 | 413 ± 13 | 584 ± 33 | 936 ± 23 | 17.6 ± 5.2 |
| Coefficient of variation | 0.05 | 0.03 | 0.05 | 0.03 | 0.06 | 0.02 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.01 | -0.02 | 0.30 | -0.44 | 0.21 | -0.21 | - |
| Pearson p-value (two tailed) |
9.79E-01 | 9.65E-01 | 5.58E-01 | 3.87E-01 | 6.89E-01 | 6.90E-01 | - |
| Stats for ATP6 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 31.3 - 36.7% | 63.3 - 68.7% | 148 - 180 | 66 - 76 | 218 - 243 | 211 - 227 | 8.9 - 25.0 |
| Median | 35.4% | 64.9% | 174 | 71 | 231 | 220 | 19.7 |
| Average ± stdev | 34.6 ± 2.0% | 65.4 ± 2.0% | 166 ± 13 | 70 ± 4 | 227 ± 9 | 219 ± 5 | 17.6 ± 5.2 |
| Coefficient of variation | 0.06 | 0.03 | 0.08 | 0.06 | 0.04 | 0.03 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.15 | -0.15 | 0.26 | -0.26 | -0.08 | -0.10 | - |
| Pearson p-value (two tailed) |
7.70E-01 | 7.70E-01 | 6.23E-01 | 6.23E-01 | 8.75E-01 | 8.49E-01 | - |
| Stats for ATP8 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 27.3 - 34.0% | 66.0 - 72.7% | 33 - 41 | 9 - 16 | 38 - 56 | 61 - 71 | 8.9 - 25.0 |
| Median | 29.2% | 70.9% | 38 | 12 | 49 | 69 | 19.7 |
| Average ± stdev | 29.8 ± 2.3% | 70.2 ± 2.3% | 37 ± 2 | 12 ± 2 | 48 ± 5 | 67 ± 3 | 17.6 ± 5.2 |
| Coefficient of variation | 0.08 | 0.03 | 0.08 | 0.20 | 0.12 | 0.05 | 0.29 |
| Pearson correlation coefficient with log10MLS |
-0.72 | 0.72 | -0.44 | -0.45 | 0.88 | -0.66 | - |
| Pearson p-value (two tailed) |
1.10E-01 | 1.10E-01 | 3.77E-01 | 3.72E-01 | 2.17E-02 | 1.55E-01 | - |
| Stats for COX1 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 35.4 - 41.5% | 58.5 - 64.6% | 316 - 375 | 231 - 279 | 489 - 528 | 416 - 469 | 8.9 - 25.0 |
| Median | 40.1% | 62.1% | 350 | 253 | 503 | 453 | 19.7 |
| Average ± stdev | 38.9 ± 2.2% | 61.1 ± 2.2% | 348 ± 18 | 252 ± 16 | 501 ± 13 | 443 ± 18 | 17.6 ± 5.2 |
| Coefficient of variation | 0.06 | 0.04 | 0.05 | 0.06 | 0.03 | 0.04 | 0.29 |
| Pearson correlation coefficient with log10MLS |
-0.11 | 0.11 | 0.17 | -0.40 | 0.26 | 0.03 | - |
| Pearson p-value (two tailed) |
8.30E-01 | 8.30E-01 | 7.50E-01 | 4.36E-01 | 6.20E-01 | 9.48E-01 | - |
| Stats for COX2 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.6 - 39.3% | 60.7 - 65.4% | 150 - 207 | 88 - 110 | 191 - 212 | 223 - 280 | 8.9 - 25.0 |
| Median | 37.8% | 62.6% | 161 | 97 | 205 | 236 | 19.7 |
| Average ± stdev | 37.4 ± 1.5% | 62.6 ± 1.5% | 166 ± 19 | 98 ± 7 | 202 ± 7 | 239 ± 18 | 17.6 ± 5.2 |
| Coefficient of variation | 0.04 | 0.02 | 0.12 | 0.08 | 0.04 | 0.08 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.17 | -0.17 | 0.63 | -0.14 | 0.14 | 0.62 | - |
| Pearson p-value (two tailed) |
7.43E-01 | 7.43E-01 | 1.83E-01 | 7.87E-01 | 7.89E-01 | 1.85E-01 | - |
| Stats for COX3 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 36.1 - 40.6% | 59.4 - 63.9% | 163 - 201 | 117 - 136 | 239 - 274 | 216 - 229 | 8.9 - 25.0 |
| Median | 39.4% | 60.6% | 191 | 124 | 250 | 225 | 19.7 |
| Average ± stdev | 38.9 ± 1.8% | 61.1 ± 1.8% | 182 ± 13 | 123 ± 6 | 254 ± 13 | 224 ± 4 | 17.6 ± 5.2 |
| Coefficient of variation | 0.05 | 0.03 | 0.08 | 0.05 | 0.05 | 0.02 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.14 | -0.14 | 0.48 | -0.78 | -0.22 | 0.30 | - |
| Pearson p-value (two tailed) |
7.88E-01 | 7.88E-01 | 3.30E-01 | 6.55E-02 | 6.71E-01 | 5.57E-01 | - |
| Stats for CYTB (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.6 - 37.1% | 62.9 - 65.4% | 256 - 275 | 132 - 148 | 361 - 397 | 345 - 369 | 8.9 - 25.0 |
| Median | 35.8% | 64.6% | 269 | 144 | 376 | 363 | 19.7 |
| Average ± stdev | 35.7 ± 1.0% | 64.3 ± 1.0% | 265 ± 6 | 141 ± 5 | 376 ± 10 | 357 ± 8 | 17.6 ± 5.2 |
| Coefficient of variation | 0.03 | 0.02 | 0.03 | 0.04 | 0.03 | 0.02 | 0.29 |
| Pearson correlation coefficient with log10MLS |
-0.82 | 0.82 | -0.81 | -0.54 | 0.39 | 0.41 | - |
| Pearson p-value (two tailed) |
4.77E-02 | 4.77E-02 | 5.24E-02 | 2.74E-01 | 4.42E-01 | 4.21E-01 | - |
| Stats for ND1 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.8 - 39.0% | 61.0 - 65.1% | 210 - 254 | 115 - 131 | 294 - 332 | 297 - 325 | 8.9 - 25.0 |
| Median | 36.5% | 64.8% | 229 | 120 | 303 | 314 | 19.7 |
| Average ± stdev | 36.1 ± 1.6% | 63.8 ± 1.6% | 228 ± 13 | 120 ± 5 | 307 ± 15 | 309 ± 9 | 17.6 ± 5.2 |
| Coefficient of variation | 0.04 | 0.02 | 0.06 | 0.05 | 0.05 | 0.03 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.67 | -0.67 | 0.81 | -0.42 | -0.21 | -0.70 | - |
| Pearson p-value (two tailed) |
1.44E-01 | 1.44E-01 | 4.94E-02 | 4.08E-01 | 6.93E-01 | 1.20E-01 | - |
| Stats for ND2 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 30.2 - 35.5% | 64.5 - 69.8% | 225 - 273 | 88 - 109 | 289 - 349 | 357 - 386 | 8.9 - 25.0 |
| Median | 34.6% | 65.4% | 262 | 97 | 319 | 376 | 19.7 |
| Average ± stdev | 33.7 ± 2.1% | 66.3 ± 2.1% | 253 ± 16 | 97 ± 6 | 315 ± 19 | 374 ± 9 | 17.6 ± 5.2 |
| Coefficient of variation | 0.06 | 0.03 | 0.07 | 0.07 | 0.06 | 0.02 | 0.29 |
| Pearson correlation coefficient with log10MLS |
-0.37 | 0.37 | -0.21 | -0.60 | 0.46 | -0.18 | - |
| Pearson p-value (two tailed) |
4.70E-01 | 4.70E-01 | 6.83E-01 | 2.07E-01 | 3.54E-01 | 7.27E-01 | - |
| Stats for ND3 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 31.9 - 39.1% | 60.9 - 68.1% | 69 - 87 | 41 - 51 | 112 - 122 | 98 - 115 | 8.9 - 25.0 |
| Median | 36.8% | 64.1% | 83 | 43 | 119 | 101 | 19.7 |
| Average ± stdev | 36.2 ± 2.5% | 63.8 ± 2.5% | 81 ± 5 | 44 ± 4 | 118 ± 3 | 103 ± 5 | 17.6 ± 5.2 |
| Coefficient of variation | 0.07 | 0.04 | 0.07 | 0.09 | 0.03 | 0.05 | 0.29 |
| Pearson correlation coefficient with log10MLS |
-0.26 | 0.23 | 0.16 | -0.57 | 0.34 | 0.28 | - |
| Pearson p-value (two tailed) |
6.22E-01 | 6.60E-01 | 7.61E-01 | 2.38E-01 | 5.16E-01 | 5.90E-01 | - |
| Stats for ND4 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 32.0 - 37.6% | 62.4 - 68.0% | 295 - 360 | 144 - 162 | 407 - 476 | 427 - 465 | 8.9 - 25.0 |
| Median | 35.5% | 65.3% | 332 | 153 | 444 | 452 | 19.7 |
| Average ± stdev | 35.3 ± 2.1% | 64.7 ± 2.1% | 329 ± 23 | 153 ± 5 | 436 ± 22 | 448 ± 11 | 17.6 ± 5.2 |
| Coefficient of variation | 0.06 | 0.03 | 0.07 | 0.04 | 0.05 | 0.03 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.26 | -0.26 | 0.42 | -0.79 | -0.31 | -0.12 | - |
| Pearson p-value (two tailed) |
6.19E-01 | 6.14E-01 | 4.05E-01 | 6.10E-02 | 5.47E-01 | 8.19E-01 | - |
| Stats for ND4L (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.0 - 39.1% | 60.6 - 65.7% | 64 - 86 | 30 - 37 | 88 - 109 | 83 - 100 | 8.9 - 25.0 |
| Median | 36.7% | 65.3% | 73 | 35 | 104 | 92 | 19.7 |
| Average ± stdev | 36.0 ± 1.9% | 63.9 ± 2.0% | 72 ± 6 | 34 ± 2 | 99 ± 7 | 90 ± 6 | 17.6 ± 5.2 |
| Coefficient of variation | 0.05 | 0.03 | 0.09 | 0.07 | 0.07 | 0.08 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.33 | -0.27 | 0.48 | -0.62 | 0.28 | -0.50 | - |
| Pearson p-value (two tailed) |
5.30E-01 | 6.06E-01 | 3.41E-01 | 1.90E-01 | 5.96E-01 | 3.14E-01 | - |
| Stats for ND5 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 30.4 - 35.9% | 64.1 - 69.6% | 367 - 444 | 184 - 210 | 530 - 625 | 608 - 636 | 8.9 - 25.0 |
| Median | 34.4% | 65.8% | 421 | 204 | 574 | 630 | 19.7 |
| Average ± stdev | 33.9 ± 1.9% | 66.1 ± 1.9% | 415 ± 25 | 197 ± 9 | 570 ± 28 | 625 ± 8 | 17.6 ± 5.2 |
| Coefficient of variation | 0.06 | 0.03 | 0.06 | 0.05 | 0.05 | 0.01 | 0.29 |
| Pearson correlation coefficient with log10MLS |
-0.01 | 0.01 | 0.15 | -0.31 | 0.24 | -0.51 | - |
| Pearson p-value (two tailed) |
9.85E-01 | 9.85E-01 | 7.75E-01 | 5.54E-01 | 6.47E-01 | 3.00E-01 | - |
| Stats for ND6 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 33.7 - 39.7% | 60.3 - 66.3% | 118 - 151 | 50 - 56 | 79 - 109 | 229 - 238 | 8.9 - 25.0 |
| Median | 36.3% | 64.1% | 135 | 51 | 101 | 234 | 19.7 |
| Average ± stdev | 36.0 ± 2.2% | 64.0 ± 2.2% | 133 ± 10 | 52 ± 2 | 96 ± 9 | 233 ± 3 | 17.6 ± 5.2 |
| Coefficient of variation | 0.06 | 0.03 | 0.08 | 0.04 | 0.10 | 0.01 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.42 | -0.42 | 0.58 | -0.63 | -0.08 | -0.85 | - |
| Pearson p-value (two tailed) |
4.09E-01 | 4.09E-01 | 2.24E-01 | 1.82E-01 | 8.74E-01 | 3.36E-02 | - |
| Stats for 12S rRNA gene (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 36.7 - 41.3% | 58.7 - 63.3% | 187 - 209 | 149 - 167 | 196 - 240 | 325 - 349 | 8.9 - 25.0 |
| Median | 40.1% | 60.5% | 202 | 162 | 208 | 340 | 19.7 |
| Average ± stdev | 39.6 ± 1.6% | 60.4 ± 1.6% | 199 ± 6 | 158 ± 6 | 209 ± 14 | 338 ± 7 | 17.6 ± 5.2 |
| Coefficient of variation | 0.04 | 0.03 | 0.03 | 0.04 | 0.07 | 0.02 | 0.29 |
| Pearson correlation coefficient with log10MLS |
-0.42 | 0.42 | -0.18 | -0.61 | 0.39 | 0.04 | - |
| Pearson p-value (two tailed) |
4.12E-01 | 4.12E-01 | 7.28E-01 | 1.99E-01 | 4.46E-01 | 9.39E-01 | - |
| Stats for 16S rRNA gene (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 33.3 - 38.8% | 61.2 - 66.7% | 274 - 336 | 241 - 265 | 349 - 412 | 567 - 620 | 8.9 - 25.0 |
| Median | 37.1% | 63.6% | 310 | 260 | 376 | 604 | 19.7 |
| Average ± stdev | 36.4 ± 1.9% | 63.5 ± 1.9% | 303 ± 20 | 255 ± 8 | 375 ± 19 | 598 ± 16 | 17.6 ± 5.2 |
| Coefficient of variation | 0.05 | 0.03 | 0.07 | 0.03 | 0.05 | 0.03 | 0.29 |
| Pearson correlation coefficient with log10MLS |
0.23 | -0.24 | 0.45 | -0.25 | 0.07 | -0.32 | - |
| Pearson p-value (two tailed) |
6.66E-01 | 6.46E-01 | 3.73E-01 | 6.36E-01 | 8.98E-01 | 5.40E-01 | - |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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