Viewing data for Hemidactylium scutatum


Scientific name Hemidactylium scutatum
Common name Four-toed salamander
Maximum lifespan 8.90 years (Hemidactylium scutatum@AnAge)

Total mtDNA (size: 17421 bases) GC AT G C A T
Base content (bases) 6360 11060 3789 2571 5144 5916
Base content per 1 kb (bases) 365 635 217 148 295 340
Base content (%) 36.5% 63.5%
Total protein-coding genes (size: 11321 bases) GC AT G C A T
Base content (bases) 4097 7223 2581 1516 3498 3725
Base content per 1 kb (bases) 362 638 228 134 309 329
Base content (%) 36.2% 63.8%
D-loop (size: 931 bases) GC AT G C A T
Base content (bases) 266 665 150 116 358 307
Base content per 1 kb (bases) 286 714 161 125 385 330
Base content (%) 28.6% 71.4%
Total tRNA-coding genes (size: 1510 bases) GC AT G C A T
Base content (bases) 563 947 331 232 423 524
Base content per 1 kb (bases) 373 627 219 154 280 347
Base content (%) 37.3% 62.7%
Total rRNA-coding genes (size: 2413 bases) GC AT G C A T
Base content (bases) 903 1510 480 423 573 937
Base content per 1 kb (bases) 374 626 199 175 237 388
Base content (%) 37.4% 62.6%
12S rRNA gene (size: 892 bases) GC AT G C A T
Base content (bases) 362 530 199 163 197 333
Base content per 1 kb (bases) 406 594 223 183 221 373
Base content (%) 40.6% 59.4%
16S rRNA gene (size: 1521 bases) GC AT G C A T
Base content (bases) 541 980 281 260 376 604
Base content per 1 kb (bases) 356 644 185 171 247 397
Base content (%) 35.6% 64.4%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 226 455 150 76 235 220
Base content per 1 kb (bases) 332 668 220 112 345 323
Base content (%) 33.2% 66.8%
ATP8 (size: 162 bases) GC AT G C A T
Base content (bases) 55 107 39 16 38 69
Base content per 1 kb (bases) 340 660 241 99 235 426
Base content (%) 34.0% 66.0%
COX1 (size: 1548 bases) GC AT G C A T
Base content (bases) 629 919 350 279 489 430
Base content per 1 kb (bases) 406 594 226 180 316 278
Base content (%) 40.6% 59.4%
COX2 (size: 688 bases) GC AT G C A T
Base content (bases) 257 431 150 107 201 230
Base content per 1 kb (bases) 374 626 218 156 292 334
Base content (%) 37.4% 62.6%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 309 475 173 136 250 225
Base content per 1 kb (bases) 394 606 221 173 319 287
Base content (%) 39.4% 60.6%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 423 718 275 148 373 345
Base content per 1 kb (bases) 371 629 241 130 327 302
Base content (%) 37.1% 62.9%
ND1 (size: 969 bases) GC AT G C A T
Base content (bases) 341 628 210 131 303 325
Base content per 1 kb (bases) 352 648 217 135 313 335
Base content (%) 35.2% 64.8%
ND2 (size: 1041 bases) GC AT G C A T
Base content (bases) 366 675 257 109 300 375
Base content per 1 kb (bases) 352 648 247 105 288 360
Base content (%) 35.2% 64.8%
ND3 (size: 343 bases) GC AT G C A T
Base content (bases) 130 213 79 51 115 98
Base content per 1 kb (bases) 379 621 230 149 335 286
Base content (%) 37.9% 62.1%
ND4 (size: 1366 bases) GC AT G C A T
Base content (bases) 470 896 308 162 447 449
Base content per 1 kb (bases) 344 656 225 119 327 329
Base content (%) 34.4% 65.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 101 195 64 37 95 100
Base content per 1 kb (bases) 340 657 215 125 320 337
Base content (%) 34.0% 65.7%
ND5 (size: 1804 bases) GC AT G C A T
Base content (bases) 620 1184 410 210 554 630
Base content per 1 kb (bases) 344 656 227 116 307 349
Base content (%) 34.4% 65.6%
ND6 (size: 516 bases) GC AT G C A T
Base content (bases) 174 342 118 56 104 238
Base content per 1 kb (bases) 337 663 229 109 202 461
Base content (%) 33.7% 66.3%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.42%)
Alanine (Ala, A)
n = 13 (5.75%)
Serine (Ser, S)
n = 16 (7.08%)
Threonine (Thr, T)
n = 20 (8.85%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.98%)
Leucine (Leu, L)
n = 59 (26.11%)
Isoleucine (Ile, I)
n = 20 (8.85%)
Methionine (Met, M)
n = 11 (4.87%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 11 (4.87%)
Tyrosine (Tyr, Y)
n = 4 (1.77%)
Tryptophan (Trp, W)
n = 4 (1.77%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (2.21%)
Asparagine (Asn, N)
n = 11 (4.87%)
Glutamine (Gln, Q)
n = 10 (4.42%)
Histidine (His, H)
n = 3 (1.33%)
Lysine (Lys, K)
n = 2 (0.88%)
Arginine (Arg, R)
n = 5 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 2 9 10 3 13 2 30 8 2 2 4 3 0 9 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 1 4 6 2 2 2 5 1 3 0 8 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 11 1 2 1 8 0 3 2 3 1 1 1 4 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 1 0 0 2 0 1 0 4 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
37 59 69 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 57 36 110
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 34 115 63
ATP8 (size: 162 bases)
Amino acid sequence: MPQLNLAPWFYILIMSWLVYLMVLPKTGNMKTPNNPTDKYNQETPNHWNWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.89%)
Alanine (Ala, A)
n = 1 (1.89%)
Serine (Ser, S)
n = 1 (1.89%)
Threonine (Thr, T)
n = 5 (9.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.77%)
Leucine (Leu, L)
n = 6 (11.32%)
Isoleucine (Ile, I)
n = 2 (3.77%)
Methionine (Met, M)
n = 4 (7.55%)
Proline (Pro, P)
n = 7 (13.21%)
Phenylalanine (Phe, F)
n = 1 (1.89%)
Tyrosine (Tyr, Y)
n = 3 (5.66%)
Tryptophan (Trp, W)
n = 5 (9.43%)
Aspartic acid (Asp, D)
n = 1 (1.89%)
Glutamic acid (Glu, E)
n = 1 (1.89%)
Asparagine (Asn, N)
n = 7 (13.21%)
Glutamine (Gln, Q)
n = 2 (3.77%)
Histidine (His, H)
n = 1 (1.89%)
Lysine (Lys, K)
n = 3 (5.66%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 2 1 0 3 0 2 1 1 0 0 2 0 0 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 1 0 0 0 0 1 0 1 0 6 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 0 0 1 0 0 0 0 2 1 0 0 3 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 0 1 0 2 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 14 21 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 14 19 15
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 11 29 10
COX1 (size: 1548 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 45 (8.74%)
Alanine (Ala, A)
n = 41 (7.96%)
Serine (Ser, S)
n = 34 (6.6%)
Threonine (Thr, T)
n = 37 (7.18%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.77%)
Leucine (Leu, L)
n = 61 (11.84%)
Isoleucine (Ile, I)
n = 36 (6.99%)
Methionine (Met, M)
n = 34 (6.6%)
Proline (Pro, P)
n = 27 (5.24%)
Phenylalanine (Phe, F)
n = 39 (7.57%)
Tyrosine (Tyr, Y)
n = 19 (3.69%)
Tryptophan (Trp, W)
n = 17 (3.3%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 16 (3.11%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.69%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 8 24 14 6 18 1 16 6 2 6 4 23 7 29 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 1 0 11 18 11 1 4 14 19 8 11 0 9 7 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 20 1 8 3 17 2 0 4 11 8 3 6 8 8 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 6 4 8 7 8 0 0 1 7 0 1 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
151 101 136 128
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 135 95 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
52 114 199 151
COX2 (size: 688 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 19 (8.33%)
Serine (Ser, S)
n = 17 (7.46%)
Threonine (Thr, T)
n = 15 (6.58%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 14 (6.14%)
Leucine (Leu, L)
n = 23 (10.09%)
Isoleucine (Ile, I)
n = 19 (8.33%)
Methionine (Met, M)
n = 17 (7.46%)
Proline (Pro, P)
n = 12 (5.26%)
Phenylalanine (Phe, F)
n = 11 (4.82%)
Tyrosine (Tyr, Y)
n = 6 (2.63%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 11 (4.82%)
Glutamic acid (Glu, E)
n = 13 (5.7%)
Asparagine (Asn, N)
n = 9 (3.95%)
Glutamine (Gln, Q)
n = 9 (3.95%)
Histidine (His, H)
n = 9 (3.95%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 1 12 5 2 5 1 7 8 1 3 1 9 1 8 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 2 6 11 0 0 1 4 3 0 1 10 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 5 0 4 2 8 0 1 2 5 1 0 3 5 4 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 10 3 6 5 4 0 0 2 4 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 49 67 48
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 60 61 84
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 41 102 68
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 20 (7.69%)
Serine (Ser, S)
n = 15 (5.77%)
Threonine (Thr, T)
n = 19 (7.31%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 20 (7.69%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 12 (4.62%)
Proline (Pro, P)
n = 11 (4.23%)
Phenylalanine (Phe, F)
n = 26 (10.0%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 14 (5.38%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 4 11 11 1 5 1 11 8 0 6 2 8 4 17 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 0 5 5 10 0 3 4 10 4 2 0 8 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 10 1 1 1 9 0 1 3 2 7 0 2 2 2 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 2 1 5 2 0 1 0 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 56 56 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 61 53 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 56 116 73
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 20 (5.28%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 18 (4.75%)
Leucine (Leu, L)
n = 53 (13.98%)
Isoleucine (Ile, I)
n = 40 (10.55%)
Methionine (Met, M)
n = 20 (5.28%)
Proline (Pro, P)
n = 24 (6.33%)
Phenylalanine (Phe, F)
n = 29 (7.65%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 11 (2.9%)
Aspartic acid (Asp, D)
n = 7 (1.85%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 14 (3.69%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 10 18 11 6 11 5 18 6 1 2 5 11 0 19 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 4 7 9 0 4 9 12 1 5 3 13 3 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 13 1 8 2 13 1 0 3 6 8 1 2 9 10 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 7 0 1 6 7 2 3 0 5 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 86 115 101
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 92 77 160
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 97 153 111
ND1 (size: 969 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.59%)
Alanine (Ala, A)
n = 28 (8.7%)
Serine (Ser, S)
n = 21 (6.52%)
Threonine (Thr, T)
n = 20 (6.21%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 13 (4.04%)
Leucine (Leu, L)
n = 57 (17.7%)
Isoleucine (Ile, I)
n = 28 (8.7%)
Methionine (Met, M)
n = 25 (7.76%)
Proline (Pro, P)
n = 21 (6.52%)
Phenylalanine (Phe, F)
n = 18 (5.59%)
Tyrosine (Tyr, Y)
n = 10 (3.11%)
Tryptophan (Trp, W)
n = 7 (2.17%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 11 (3.42%)
Asparagine (Asn, N)
n = 15 (4.66%)
Glutamine (Gln, Q)
n = 7 (2.17%)
Histidine (His, H)
n = 4 (1.24%)
Lysine (Lys, K)
n = 7 (2.17%)
Arginine (Arg, R)
n = 8 (2.48%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 4 22 7 3 20 4 22 6 1 3 2 8 0 11 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 0 3 11 14 0 4 4 9 1 3 1 14 3 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 14 1 4 0 13 1 1 2 8 2 2 1 8 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 10 1 1 2 6 1 1 0 6 1 0 0 0 1 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 74 98 78
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 87 58 141
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 49 169 84
ND2 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 29 (8.38%)
Serine (Ser, S)
n = 32 (9.25%)
Threonine (Thr, T)
n = 38 (10.98%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.6%)
Leucine (Leu, L)
n = 53 (15.32%)
Isoleucine (Ile, I)
n = 25 (7.23%)
Methionine (Met, M)
n = 35 (10.12%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 12 (3.47%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 7 (2.02%)
Asparagine (Asn, N)
n = 15 (4.34%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 11 (3.18%)
Arginine (Arg, R)
n = 5 (1.45%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 4 32 11 2 20 1 18 10 0 3 0 6 0 8 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 6 15 8 0 0 4 7 3 5 0 15 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 20 2 5 4 19 1 0 3 4 4 0 1 9 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 7 0 2 0 11 0 0 2 2 1 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 76 127 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 117 60 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 64 188 82
ND3 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 29 (8.38%)
Serine (Ser, S)
n = 32 (9.25%)
Threonine (Thr, T)
n = 38 (10.98%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.6%)
Leucine (Leu, L)
n = 53 (15.32%)
Isoleucine (Ile, I)
n = 25 (7.23%)
Methionine (Met, M)
n = 35 (10.12%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 12 (3.47%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 7 (2.02%)
Asparagine (Asn, N)
n = 15 (4.34%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 11 (3.18%)
Arginine (Arg, R)
n = 5 (1.45%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 4 32 11 2 20 1 18 10 0 3 0 6 0 8 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 6 15 8 0 0 4 7 3 5 0 15 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 20 2 5 4 19 1 0 3 4 4 0 1 9 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 7 0 2 0 11 0 0 2 2 1 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 76 127 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 117 60 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 64 188 82
ND4 (size: 1366 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (4.85%)
Alanine (Ala, A)
n = 27 (5.95%)
Serine (Ser, S)
n = 35 (7.71%)
Threonine (Thr, T)
n = 46 (10.13%)
Cysteine (Cys, C)
n = 6 (1.32%)
Valine (Val, V)
n = 16 (3.52%)
Leucine (Leu, L)
n = 78 (17.18%)
Isoleucine (Ile, I)
n = 42 (9.25%)
Methionine (Met, M)
n = 38 (8.37%)
Proline (Pro, P)
n = 22 (4.85%)
Phenylalanine (Phe, F)
n = 22 (4.85%)
Tyrosine (Tyr, Y)
n = 13 (2.86%)
Tryptophan (Trp, W)
n = 14 (3.08%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 12 (2.64%)
Asparagine (Asn, N)
n = 20 (4.41%)
Glutamine (Gln, Q)
n = 10 (2.2%)
Histidine (His, H)
n = 9 (1.98%)
Lysine (Lys, K)
n = 11 (2.42%)
Arginine (Arg, R)
n = 10 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 12 36 16 6 18 3 33 9 1 5 2 5 4 20 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 4 2 5 11 10 1 3 9 6 4 5 2 14 1 15
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 18 1 4 6 16 1 3 5 9 4 0 2 13 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 10 2 0 2 10 1 0 2 8 0 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 94 165 117
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
60 122 77 196
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 92 207 133
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 6 (6.12%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 10 (10.2%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 11 (11.22%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 2 (2.04%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 7 4 0 6 1 12 2 0 2 0 0 0 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 3 0 0 5 1 1 0 3 0 0 1 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 8 0 2 2 4 1 0 1 0 1 0 0 2 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 2 0 1 2 0 1 0 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
16 21 29 32
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
12 27 17 42
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 16 54 19
ND5 (size: 1804 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (4.83%)
Alanine (Ala, A)
n = 40 (6.67%)
Serine (Ser, S)
n = 45 (7.5%)
Threonine (Thr, T)
n = 62 (10.33%)
Cysteine (Cys, C)
n = 9 (1.5%)
Valine (Val, V)
n = 20 (3.33%)
Leucine (Leu, L)
n = 86 (14.33%)
Isoleucine (Ile, I)
n = 62 (10.33%)
Methionine (Met, M)
n = 42 (7.0%)
Proline (Pro, P)
n = 23 (3.83%)
Phenylalanine (Phe, F)
n = 36 (6.0%)
Tyrosine (Tyr, Y)
n = 12 (2.0%)
Tryptophan (Trp, W)
n = 12 (2.0%)
Aspartic acid (Asp, D)
n = 10 (1.67%)
Glutamic acid (Glu, E)
n = 11 (1.83%)
Asparagine (Asn, N)
n = 34 (5.67%)
Glutamine (Gln, Q)
n = 20 (3.33%)
Histidine (His, H)
n = 10 (1.67%)
Lysine (Lys, K)
n = 29 (4.83%)
Arginine (Arg, R)
n = 9 (1.5%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
45 17 36 16 5 31 6 26 20 0 2 1 13 4 25 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 7 11 16 12 1 3 7 17 2 5 1 15 2 18
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 27 2 13 4 19 2 3 4 8 4 0 2 15 19 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 2 4 6 25 4 0 2 6 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
110 120 236 135
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
66 163 126 246
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
34 127 268 172
ND6 (size: 516 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (8.77%)
Alanine (Ala, A)
n = 13 (7.6%)
Serine (Ser, S)
n = 19 (11.11%)
Threonine (Thr, T)
n = 3 (1.75%)
Cysteine (Cys, C)
n = 3 (1.75%)
Valine (Val, V)
n = 22 (12.87%)
Leucine (Leu, L)
n = 30 (17.54%)
Isoleucine (Ile, I)
n = 9 (5.26%)
Methionine (Met, M)
n = 9 (5.26%)
Proline (Pro, P)
n = 4 (2.34%)
Phenylalanine (Phe, F)
n = 15 (8.77%)
Tyrosine (Tyr, Y)
n = 9 (5.26%)
Tryptophan (Trp, W)
n = 4 (2.34%)
Aspartic acid (Asp, D)
n = 3 (1.75%)
Glutamic acid (Glu, E)
n = 4 (2.34%)
Asparagine (Asn, N)
n = 7 (4.09%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 1 (0.58%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 0 6 5 0 1 1 20 0 0 13 0 5 4 12 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 3 0 7 1 2 3 3 0 4 8 0 1 1 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 9 1 2 2 2 3 9 0 3 3 6 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 3 3 0 1 0 1 0 0 0 1 0 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 12 35 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
29 34 24 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 10 45 85
Total protein-coding genes (size: 11340 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 219 (5.8%)
Alanine (Ala, A)
n = 266 (7.04%)
Serine (Ser, S)
n = 283 (7.49%)
Threonine (Thr, T)
n = 311 (8.23%)
Cysteine (Cys, C)
n = 32 (0.85%)
Valine (Val, V)
n = 187 (4.95%)
Leucine (Leu, L)
n = 582 (15.41%)
Isoleucine (Ile, I)
n = 312 (8.26%)
Methionine (Met, M)
n = 261 (6.91%)
Proline (Pro, P)
n = 193 (5.11%)
Phenylalanine (Phe, F)
n = 233 (6.17%)
Tyrosine (Tyr, Y)
n = 110 (2.91%)
Tryptophan (Trp, W)
n = 109 (2.89%)
Aspartic acid (Asp, D)
n = 63 (1.67%)
Glutamic acid (Glu, E)
n = 101 (2.67%)
Asparagine (Asn, N)
n = 161 (4.26%)
Glutamine (Gln, Q)
n = 94 (2.49%)
Histidine (His, H)
n = 94 (2.49%)
Lysine (Lys, K)
n = 90 (2.38%)
Arginine (Arg, R)
n = 69 (1.83%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
248 64 217 118 35 155 28 222 85 9 48 21 94 24 167 66
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
44 14 18 57 98 102 9 29 55 100 35 40 10 119 24 68
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
76 156 11 63 28 132 11 14 35 68 42 11 24 84 77 33
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
61 80 21 27 36 81 9 8 9 49 3 2 0 4 1 98
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
836 786 1186 969
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
480 1004 718 1575
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
264 731 1696 1086 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​e​m​i​d​a​c​t​y​l​i​u​m​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ s​c​u​t​a​t​u​m​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.