Stats for order Psittaciformes
Browsing families:
Psittacidae (6)
| Stats for total mtDNA (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.3 - 46.8% | 52.7 - 55.3% | 5180 - 5772 | 2245 - 2490 | 3873 - 4400 | 4918 - 5664 | 21.0 - 65.8 |
| Median | 46.3% | 54.0% | 5479 | 2374 | 3979 | 5184 | 35.0 |
| Average ± stdev | 45.8 ± 1.0% | 54.1 ± 1.0% | 5464 ± 175 | 2359 ± 80 | 4037 ± 169 | 5213 ± 224 | 37.0 ± 15.5 |
| Coefficient of variation | 0.02 | 0.02 | 0.03 | 0.03 | 0.04 | 0.04 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.17 | -0.42 | -0.72 | 0.19 | -0.49 | -0.66 | - |
| Pearson p-value (two tailed) |
7.43E-01 | 4.11E-01 | 1.07E-01 | 7.14E-01 | 3.29E-01 | 1.52E-01 | - |
| Stats for total protein-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.7 - 47.2% | 52.7 - 55.2% | 3734 - 3994 | 1264 - 1493 | 2592 - 2770 | 3299 - 3562 | 21.0 - 65.8 |
| Median | 46.6% | 53.5% | 3882 | 1417 | 2698 | 3473 | 35.0 |
| Average ± stdev | 46.2 ± 0.8% | 53.7 ± 0.8% | 3881 ± 83 | 1381 ± 78 | 2670 ± 61 | 3444 ± 84 | 37.0 ± 15.5 |
| Coefficient of variation | 0.02 | 0.02 | 0.02 | 0.06 | 0.02 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.09 | -0.15 | -0.34 | 0.47 | 0.54 | -0.52 | - |
| Pearson p-value (two tailed) |
8.70E-01 | 7.84E-01 | 5.08E-01 | 3.43E-01 | 2.74E-01 | 2.90E-01 | - |
| Stats for D-loop (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Stats for total tRNA-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 41.0 - 43.7% | 56.0 - 59.0% | 375 - 400 | 251 - 276 | 366 - 389 | 492 - 522 | 21.0 - 65.8 |
| Median | 42.6% | 58.0% | 392 | 256 | 376 | 511 | 35.0 |
| Average ± stdev | 42.3 ± 1.1% | 57.5 ± 1.2% | 390 ± 8 | 259 ± 9 | 375 ± 7 | 507 ± 11 | 37.0 ± 15.5 |
| Coefficient of variation | 0.03 | 0.02 | 0.02 | 0.04 | 0.02 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.06 | -0.21 | -0.40 | 0.40 | 0.06 | -0.19 | - |
| Pearson p-value (two tailed) |
9.16E-01 | 6.87E-01 | 4.29E-01 | 4.37E-01 | 9.08E-01 | 7.16E-01 | - |
| Stats for total rRNA-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 47.5 - 49.3% | 50.1 - 51.6% | 752 - 778 | 462 - 494 | 454 - 470 | 820 - 856 | 21.0 - 65.8 |
| Median | 48.7% | 51.0% | 772 | 474 | 461 | 848 | 35.0 |
| Average ± stdev | 48.6 ± 0.6% | 51.0 ± 0.6% | 767 ± 9 | 473 ± 10 | 461 ± 5 | 840 ± 12 | 37.0 ± 15.5 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.42 | -0.58 | -0.77 | 0.71 | 0.78 | -0.39 | - |
| Pearson p-value (two tailed) |
4.05E-01 | 2.27E-01 | 7.18E-02 | 1.17E-01 | 6.71E-02 | 4.43E-01 | - |
| Stats for ATP6 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.2 - 48.1% | 51.9 - 55.8% | 244 - 254 | 58 - 76 | 160 - 176 | 183 - 210 | 21.0 - 65.8 |
| Median | 46.2% | 55.3% | 247 | 64 | 171 | 206 | 35.0 |
| Average ± stdev | 45.7 ± 1.5% | 54.3 ± 1.5% | 248 ± 4 | 64 ± 6 | 168 ± 5 | 202 ± 8 | 37.0 ± 15.5 |
| Coefficient of variation | 0.03 | 0.03 | 0.02 | 0.10 | 0.03 | 0.04 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.37 | -0.37 | 0.28 | 0.37 | 0.57 | -0.71 | - |
| Pearson p-value (two tailed) |
4.65E-01 | 4.65E-01 | 5.97E-01 | 4.74E-01 | 2.39E-01 | 1.15E-01 | - |
| Stats for ATP8 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 40.7 - 44.0% | 56.0 - 59.3% | 57 - 64 | 6 - 13 | 35 - 40 | 56 - 63 | 21.0 - 65.8 |
| Median | 41.7% | 58.3% | 63 | 9 | 38 | 62 | 35.0 |
| Average ± stdev | 42.0 ± 1.1% | 58.0 ± 1.1% | 61 ± 2 | 8 ± 2 | 37 ± 1 | 60 ± 2 | 37.0 ± 15.5 |
| Coefficient of variation | 0.03 | 0.02 | 0.04 | 0.28 | 0.05 | 0.04 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.45 | 0.45 | -0.86 | 0.47 | 0.41 | 0.01 | - |
| Pearson p-value (two tailed) |
3.65E-01 | 3.65E-01 | 2.94E-02 | 3.43E-01 | 4.15E-01 | 9.78E-01 | - |
| Stats for COX1 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 46.2 - 48.3% | 51.7 - 53.8% | 464 - 508 | 233 - 273 | 359 - 404 | 413 - 448 | 21.0 - 65.8 |
| Median | 47.9% | 52.2% | 476 | 260 | 385 | 427 | 35.0 |
| Average ± stdev | 47.5 ± 0.7% | 52.5 ± 0.7% | 480 ± 15 | 255 ± 14 | 384 ± 13 | 427 ± 11 | 37.0 ± 15.5 |
| Coefficient of variation | 0.02 | 0.01 | 0.03 | 0.06 | 0.04 | 0.03 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.63 | 0.63 | -0.50 | 0.09 | 0.85 | -0.44 | - |
| Pearson p-value (two tailed) |
1.79E-01 | 1.79E-01 | 3.11E-01 | 8.69E-01 | 3.25E-02 | 3.83E-01 | - |
| Stats for COX2 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.0 - 49.0% | 51.0 - 57.0% | 202 - 235 | 92 - 100 | 147 - 174 | 201 - 217 | 21.0 - 65.8 |
| Median | 45.9% | 55.0% | 221 | 97 | 171 | 211 | 35.0 |
| Average ± stdev | 45.7 ± 2.4% | 54.3 ± 2.4% | 217 ± 12 | 95 ± 3 | 163 ± 10 | 208 ± 5 | 37.0 ± 15.5 |
| Coefficient of variation | 0.05 | 0.04 | 0.06 | 0.03 | 0.06 | 0.03 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.52 | 0.52 | -0.60 | -0.12 | 0.63 | 0.23 | - |
| Pearson p-value (two tailed) |
2.94E-01 | 2.94E-01 | 2.03E-01 | 8.17E-01 | 1.80E-01 | 6.65E-01 | - |
| Stats for COX3 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 46.6 - 48.3% | 51.7 - 53.4% | 248 - 266 | 109 - 123 | 184 - 196 | 211 - 231 | 21.0 - 65.8 |
| Median | 47.8% | 52.7% | 254 | 123 | 194 | 221 | 35.0 |
| Average ± stdev | 47.5 ± 0.7% | 52.5 ± 0.7% | 254 ± 5 | 118 ± 5 | 191 ± 4 | 220 ± 6 | 37.0 ± 15.5 |
| Coefficient of variation | 0.01 | 0.01 | 0.02 | 0.05 | 0.02 | 0.03 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.48 | -0.48 | 0.04 | 0.39 | 0.36 | -0.64 | - |
| Pearson p-value (two tailed) |
3.36E-01 | 3.36E-01 | 9.41E-01 | 4.45E-01 | 4.83E-01 | 1.67E-01 | - |
| Stats for CYTB (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.6 - 48.7% | 51.3 - 55.4% | 370 - 414 | 135 - 157 | 265 - 299 | 305 - 332 | 21.0 - 65.8 |
| Median | 46.8% | 53.8% | 391 | 140 | 292 | 321 | 35.0 |
| Average ± stdev | 46.8 ± 1.5% | 53.2 ± 1.5% | 391 ± 13 | 141 ± 7 | 286 ± 11 | 320 ± 8 | 37.0 ± 15.5 |
| Coefficient of variation | 0.03 | 0.03 | 0.03 | 0.05 | 0.04 | 0.03 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.35 | -0.35 | 0.04 | 0.64 | -0.30 | -0.28 | - |
| Pearson p-value (two tailed) |
5.01E-01 | 5.01E-01 | 9.46E-01 | 1.72E-01 | 5.69E-01 | 5.92E-01 | - |
| Stats for ND1 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 45.2 - 47.8% | 52.2 - 54.8% | 333 - 346 | 104 - 131 | 243 - 257 | 261 - 294 | 21.0 - 65.8 |
| Median | 47.2% | 53.7% | 339 | 126 | 248 | 284 | 35.0 |
| Average ± stdev | 46.7 ± 1.1% | 53.3 ± 1.1% | 338 ± 3 | 119 ± 10 | 248 ± 4 | 275 ± 13 | 37.0 ± 15.5 |
| Coefficient of variation | 0.02 | 0.02 | 0.01 | 0.09 | 0.02 | 0.05 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.36 | -0.36 | -0.17 | 0.41 | -0.26 | -0.18 | - |
| Pearson p-value (two tailed) |
4.78E-01 | 4.78E-01 | 7.44E-01 | 4.21E-01 | 6.13E-01 | 7.36E-01 | - |
| Stats for ND2 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.3 - 45.2% | 54.8 - 56.7% | 361 - 386 | 72 - 97 | 226 - 254 | 329 - 356 | 21.0 - 65.8 |
| Median | 44.9% | 55.8% | 378 | 89 | 241 | 339 | 35.0 |
| Average ± stdev | 44.5 ± 0.8% | 55.5 ± 0.8% | 375 ± 9 | 87 ± 7 | 238 ± 10 | 339 ± 9 | 37.0 ± 15.5 |
| Coefficient of variation | 0.02 | 0.01 | 0.02 | 0.09 | 0.04 | 0.03 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.83 | -0.83 | 0.06 | 0.69 | -0.09 | -0.58 | - |
| Pearson p-value (two tailed) |
3.95E-02 | 3.95E-02 | 9.04E-01 | 1.28E-01 | 8.62E-01 | 2.28E-01 | - |
| Stats for ND3 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.0 - 46.4% | 53.6 - 57.0% | 110 - 123 | 40 - 44 | 84 - 95 | 102 - 109 | 21.0 - 65.8 |
| Median | 44.4% | 55.8% | 114 | 42 | 90 | 105 | 35.0 |
| Average ± stdev | 44.7 ± 1.4% | 55.3 ± 1.4% | 115 ± 4 | 41 ± 1 | 89 ± 3 | 104 ± 2 | 37.0 ± 15.5 |
| Coefficient of variation | 0.03 | 0.02 | 0.04 | 0.04 | 0.04 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.25 | -0.25 | 0.06 | 0.45 | -0.11 | -0.39 | - |
| Pearson p-value (two tailed) |
6.26E-01 | 6.26E-01 | 9.07E-01 | 3.75E-01 | 8.33E-01 | 4.42E-01 | - |
| Stats for ND4 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.8 - 47.7% | 52.3 - 55.1% | 489 - 528 | 133 - 157 | 305 - 344 | 402 - 424 | 21.0 - 65.8 |
| Median | 47.2% | 53.5% | 502 | 147 | 332 | 423 | 35.0 |
| Average ± stdev | 46.6 ± 1.0% | 53.3 ± 1.0% | 506 ± 14 | 143 ± 9 | 326 ± 13 | 416 ± 8 | 37.0 ± 15.5 |
| Coefficient of variation | 0.02 | 0.02 | 0.03 | 0.06 | 0.04 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.25 | 0.24 | -0.38 | 0.25 | 0.45 | -0.37 | - |
| Pearson p-value (two tailed) |
6.32E-01 | 6.44E-01 | 4.54E-01 | 6.39E-01 | 3.71E-01 | 4.66E-01 | - |
| Stats for ND4L (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.4 - 48.5% | 51.5 - 56.6% | 95 - 105 | 34 - 42 | 71 - 84 | 77 - 85 | 21.0 - 65.8 |
| Median | 47.1% | 53.5% | 101 | 41 | 76 | 84 | 35.0 |
| Average ± stdev | 46.5 ± 1.7% | 53.5 ± 1.7% | 99 ± 3 | 38 ± 2 | 76 ± 3 | 82 ± 2 | 37.0 ± 15.5 |
| Coefficient of variation | 0.04 | 0.03 | 0.04 | 0.07 | 0.05 | 0.03 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.02 | 0.02 | 0.01 | -0.05 | 0.43 | -0.60 | - |
| Pearson p-value (two tailed) |
9.67E-01 | 9.67E-01 | 9.85E-01 | 9.27E-01 | 3.89E-01 | 2.11E-01 | - |
| Stats for ND5 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 42.8 - 46.7% | 53.3 - 56.7% | 567 - 632 | 191 - 226 | 401 - 435 | 567 - 599 | 21.0 - 65.8 |
| Median | 45.5% | 55.0% | 621 | 209 | 404 | 595 | 35.0 |
| Average ± stdev | 45.1 ± 1.4% | 54.8 ± 1.2% | 610 ± 21 | 207 ± 13 | 409 ± 12 | 586 ± 11 | 37.0 ± 15.5 |
| Coefficient of variation | 0.03 | 0.02 | 0.04 | 0.06 | 0.03 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.01 | -0.04 | -0.28 | 0.43 | 0.30 | -0.39 | - |
| Pearson p-value (two tailed) |
9.80E-01 | 9.35E-01 | 5.86E-01 | 3.90E-01 | 5.66E-01 | 4.45E-01 | - |
| Stats for ND6 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 45.1 - 50.8% | 47.2 - 54.9% | 174 - 199 | 49 - 76 | 47 - 68 | 187 - 224 | 21.0 - 65.8 |
| Median | 48.3% | 52.4% | 188 | 63 | 56 | 217 | 35.0 |
| Average ± stdev | 48.0 ± 2.3% | 51.6 ± 2.9% | 186 ± 7 | 61 ± 8 | 56 ± 6 | 209 ± 12 | 37.0 ± 15.5 |
| Coefficient of variation | 0.05 | 0.06 | 0.04 | 0.14 | 0.11 | 0.06 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.45 | -0.61 | -0.22 | 0.94 | 0.61 | -0.84 | - |
| Pearson p-value (two tailed) |
3.68E-01 | 1.98E-01 | 6.78E-01 | 5.07E-03 | 1.97E-01 | 3.56E-02 | - |
| Stats for 12S rRNA gene (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 48.5 - 50.1% | 48.8 - 51.5% | 292 - 304 | 177 - 198 | 170 - 177 | 303 - 328 | 21.0 - 65.8 |
| Median | 49.7% | 50.3% | 301 | 183 | 175 | 316 | 35.0 |
| Average ± stdev | 49.5 ± 0.6% | 50.1 ± 0.9% | 298 ± 3 | 184 ± 6 | 173 ± 2 | 315 ± 7 | 37.0 ± 15.5 |
| Coefficient of variation | 0.01 | 0.02 | 0.01 | 0.04 | 0.01 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
0.27 | -0.82 | -0.68 | 0.82 | 0.21 | -0.82 | - |
| Pearson p-value (two tailed) |
6.02E-01 | 4.62E-02 | 1.34E-01 | 4.74E-02 | 6.88E-01 | 4.74E-02 | - |
| Stats for 16S rRNA gene (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 46.5 - 48.9% | 50.8 - 52.3% | 454 - 477 | 282 - 296 | 284 - 294 | 517 - 539 | 21.0 - 65.8 |
| Median | 48.3% | 51.7% | 474 | 291 | 288 | 528 | 35.0 |
| Average ± stdev | 48.0 ± 0.9% | 51.5 ± 0.6% | 468 ± 7 | 288 ± 4 | 287 ± 3 | 525 ± 8 | 37.0 ± 15.5 |
| Coefficient of variation | 0.02 | 0.01 | 0.02 | 0.02 | 0.01 | 0.02 | 0.42 |
| Pearson correlation coefficient with log10MLS |
-0.62 | -0.15 | -0.60 | 0.45 | 0.96 | 0.10 | - |
| Pearson p-value (two tailed) |
1.90E-01 | 7.75E-01 | 2.08E-01 | 3.65E-01 | 2.27E-03 | 8.48E-01 | - |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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