Stats for order Salmoniformes
Browsing families:
Salmonidae (19)
| Stats for total mtDNA (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.4 - 47.6% | 52.4 - 55.6% | 4529 - 4945 | 2703 - 3094 | 4298 - 4570 | 4467 - 4740 | 3.0 - 50.0 |
| Median | 45.9% | 54.1% | 4817 | 2854 | 4365 | 4649 | 15.0 |
| Average ± stdev | 46.0 ± 0.8% | 54.0 ± 0.8% | 4807 ± 94 | 2874 ± 104 | 4387 ± 65 | 4623 ± 83 | 17.7 ± 12.2 |
| Coefficient of variation | 0.02 | 0.02 | 0.02 | 0.04 | 0.02 | 0.02 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.18 | -0.18 | 0.09 | 0.17 | -0.06 | -0.22 | - |
| Pearson p-value (two tailed) |
4.69E-01 | 4.70E-01 | 7.22E-01 | 4.93E-01 | 7.94E-01 | 3.68E-01 | - |
| Stats for total protein-coding genes (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.0 - 48.1% | 51.9 - 56.0% | 3097 - 3569 | 1568 - 1967 | 2832 - 3319 | 2772 - 3110 | 3.0 - 50.0 |
| Median | 45.8% | 54.2% | 3470 | 1751 | 3149 | 3034 | 15.0 |
| Average ± stdev | 46.0 ± 1.1% | 54.0 ± 1.1% | 3446 ± 111 | 1775 ± 99 | 3133 ± 94 | 2995 ± 88 | 17.7 ± 12.2 |
| Coefficient of variation | 0.02 | 0.02 | 0.03 | 0.06 | 0.03 | 0.03 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.21 | -0.21 | 0.23 | 0.27 | 0.15 | -0.06 | - |
| Pearson p-value (two tailed) |
3.83E-01 | 3.85E-01 | 3.43E-01 | 2.56E-01 | 5.35E-01 | 8.15E-01 | - |
| Stats for D-loop (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.2 - 41.1% | 58.9 - 65.8% | 200 - 291 | 142 - 184 | 256 - 371 | 254 - 371 | 3.0 - 50.0 |
| Median | 38.7% | 61.3% | 235 | 158 | 320 | 320 | 15.0 |
| Average ± stdev | 38.6 ± 1.5% | 61.4 ± 1.5% | 242 ± 24 | 157 ± 10 | 317 ± 25 | 319 ± 25 | 17.7 ± 12.2 |
| Coefficient of variation | 0.04 | 0.02 | 0.10 | 0.06 | 0.08 | 0.08 | 0.69 |
| Pearson correlation coefficient with log10MLS |
-0.27 | 0.27 | 0.02 | -0.41 | -0.05 | 0.23 | - |
| Pearson p-value (two tailed) |
2.56E-01 | 2.56E-01 | 9.32E-01 | 8.02E-02 | 8.51E-01 | 3.48E-01 | - |
| Stats for total tRNA-coding genes (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.7 - 46.8% | 53.2 - 55.3% | 385 - 399 | 305 - 331 | 379 - 397 | 442 - 467 | 3.0 - 50.0 |
| Median | 45.6% | 54.4% | 396 | 310 | 385 | 460 | 15.0 |
| Average ± stdev | 45.6 ± 0.6% | 54.4 ± 0.6% | 394 ± 4 | 314 ± 7 | 386 ± 4 | 457 ± 6 | 17.7 ± 12.2 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 0.01 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.08 | -0.08 | -0.33 | 0.37 | 0.34 | -0.26 | - |
| Pearson p-value (two tailed) |
7.35E-01 | 7.35E-01 | 1.72E-01 | 1.15E-01 | 1.60E-01 | 2.92E-01 | - |
| Stats for total rRNA-coding genes (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 48.3 - 49.5% | 50.5 - 51.7% | 677 - 692 | 583 - 613 | 513 - 524 | 809 - 841 | 3.0 - 50.0 |
| Median | 48.8% | 51.2% | 684 | 600 | 517 | 826 | 15.0 |
| Average ± stdev | 48.9 ± 0.4% | 51.1 ± 0.4% | 684 ± 4 | 600 ± 8 | 518 ± 3 | 824 ± 9 | 17.7 ± 12.2 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.40 | -0.40 | 0.40 | 0.24 | -0.41 | -0.27 | - |
| Pearson p-value (two tailed) |
9.31E-02 | 9.31E-02 | 9.39E-02 | 3.32E-01 | 7.81E-02 | 2.60E-01 | - |
| Stats for ATP6 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 42.4 - 47.8% | 52.2 - 57.6% | 200 - 233 | 80 - 100 | 186 - 208 | 166 - 186 | 3.0 - 50.0 |
| Median | 45.5% | 54.5% | 219 | 92 | 202 | 172 | 15.0 |
| Average ± stdev | 45.5 ± 1.5% | 54.5 ± 1.5% | 219 ± 7 | 91 ± 5 | 198 ± 7 | 173 ± 5 | 17.7 ± 12.2 |
| Coefficient of variation | 0.03 | 0.03 | 0.03 | 0.06 | 0.04 | 0.03 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.27 | -0.27 | 0.19 | 0.23 | -0.18 | -0.21 | - |
| Pearson p-value (two tailed) |
2.58E-01 | 2.58E-01 | 4.31E-01 | 3.46E-01 | 4.58E-01 | 3.80E-01 | - |
| Stats for ATP8 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.5 - 48.8% | 51.2 - 56.5% | 53 - 59 | 20 - 24 | 39 - 44 | 46 - 51 | 3.0 - 50.0 |
| Median | 45.2% | 54.8% | 55 | 22 | 42 | 50 | 15.0 |
| Average ± stdev | 45.9 ± 1.7% | 54.1 ± 1.7% | 55 ± 1 | 22 ± 1 | 41 ± 1 | 48 ± 1 | 17.7 ± 12.2 |
| Coefficient of variation | 0.04 | 0.03 | 0.03 | 0.06 | 0.03 | 0.03 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.21 | -0.21 | 0.19 | 0.20 | -0.08 | -0.31 | - |
| Pearson p-value (two tailed) |
3.79E-01 | 3.79E-01 | 4.35E-01 | 4.09E-01 | 7.39E-01 | 2.01E-01 | - |
| Stats for COX1 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.3 - 47.8% | 52.2 - 55.7% | 405 - 439 | 275 - 307 | 447 - 487 | 350 - 399 | 3.0 - 50.0 |
| Median | 45.6% | 54.4% | 418 | 286 | 463 | 382 | 15.0 |
| Average ± stdev | 45.7 ± 0.9% | 54.3 ± 0.9% | 419 ± 8 | 288 ± 9 | 462 ± 9 | 380 ± 13 | 17.7 ± 12.2 |
| Coefficient of variation | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 0.04 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.27 | -0.27 | 0.18 | 0.22 | 0.46 | -0.60 | - |
| Pearson p-value (two tailed) |
2.68E-01 | 2.68E-01 | 4.64E-01 | 3.65E-01 | 4.52E-02 | 7.12E-03 | - |
| Stats for COX2 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.8 - 45.7% | 54.3 - 56.2% | 186 - 198 | 110 - 120 | 187 - 203 | 184 - 192 | 3.0 - 50.0 |
| Median | 44.4% | 55.6% | 194 | 115 | 195 | 188 | 15.0 |
| Average ± stdev | 44.5 ± 0.6% | 55.5 ± 0.6% | 192 ± 3 | 114 ± 2 | 194 ± 4 | 188 ± 2 | 17.7 ± 12.2 |
| Coefficient of variation | 0.01 | 0.01 | 0.02 | 0.02 | 0.02 | 0.01 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.57 | -0.57 | 0.43 | 0.31 | -0.34 | -0.30 | - |
| Pearson p-value (two tailed) |
1.11E-02 | 1.11E-02 | 6.80E-02 | 1.94E-01 | 1.56E-01 | 2.19E-01 | - |
| Stats for COX3 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.7 - 49.2% | 50.8 - 55.3% | 227 - 243 | 122 - 143 | 215 - 234 | 181 - 208 | 3.0 - 50.0 |
| Median | 46.9% | 53.1% | 234 | 135 | 227 | 191 | 15.0 |
| Average ± stdev | 47.0 ± 1.2% | 53.0 ± 1.2% | 234 ± 5 | 134 ± 4 | 225 ± 5 | 190 ± 6 | 17.7 ± 12.2 |
| Coefficient of variation | 0.03 | 0.02 | 0.02 | 0.04 | 0.03 | 0.03 | 0.69 |
| Pearson correlation coefficient with log10MLS |
-0.07 | 0.07 | -0.00 | -0.14 | -0.03 | 0.12 | - |
| Pearson p-value (two tailed) |
7.79E-01 | 7.79E-01 | 9.87E-01 | 5.76E-01 | 9.10E-01 | 6.15E-01 | - |
| Stats for CYTB (group size: 18 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 44.4 - 48.2% | 51.8 - 55.6% | 324 - 357 | 170 - 199 | 319 - 344 | 263 - 293 | 3.0 - 50.0 |
| Median | 46.6% | 53.5% | 351 | 185 | 333 | 277 | 16.0 |
| Average ± stdev | 46.7 ± 1.0% | 53.3 ± 1.0% | 347 ± 8 | 185 ± 7 | 331 ± 7 | 276 ± 6 | 18.3 ± 12.2 |
| Coefficient of variation | 0.02 | 0.02 | 0.03 | 0.04 | 0.02 | 0.02 | 0.67 |
| Pearson correlation coefficient with log10MLS |
0.08 | -0.08 | 0.11 | -0.03 | -0.30 | 0.19 | - |
| Pearson p-value (two tailed) |
7.66E-01 | 7.66E-01 | 6.78E-01 | 9.11E-01 | 2.27E-01 | 4.41E-01 | - |
| Stats for ND1 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 45.3 - 50.3% | 49.7 - 54.7% | 282 - 312 | 140 - 184 | 261 - 291 | 211 - 262 | 3.0 - 50.0 |
| Median | 47.5% | 52.5% | 299 | 161 | 276 | 241 | 15.0 |
| Average ± stdev | 47.3 ± 1.4% | 52.7 ± 1.4% | 300 ± 7 | 160 ± 12 | 274 ± 6 | 239 ± 12 | 17.7 ± 12.2 |
| Coefficient of variation | 0.03 | 0.03 | 0.02 | 0.08 | 0.03 | 0.05 | 0.69 |
| Pearson correlation coefficient with log10MLS |
-0.02 | 0.02 | 0.01 | -0.03 | 0.18 | -0.08 | - |
| Pearson p-value (two tailed) |
9.39E-01 | 9.31E-01 | 9.74E-01 | 9.17E-01 | 4.58E-01 | 7.60E-01 | - |
| Stats for ND2 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.5 - 48.7% | 51.3 - 56.5% | 313 - 367 | 123 - 173 | 264 - 301 | 269 - 300 | 3.0 - 50.0 |
| Median | 45.7% | 54.3% | 339 | 141 | 284 | 282 | 15.0 |
| Average ± stdev | 46.0 ± 1.5% | 54.0 ± 1.5% | 336 ± 13 | 145 ± 11 | 282 ± 11 | 284 ± 8 | 17.7 ± 12.2 |
| Coefficient of variation | 0.03 | 0.03 | 0.04 | 0.08 | 0.04 | 0.03 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.41 | -0.41 | 0.23 | 0.26 | -0.19 | -0.49 | - |
| Pearson p-value (two tailed) |
7.93E-02 | 7.93E-02 | 3.45E-01 | 2.74E-01 | 4.29E-01 | 3.40E-02 | - |
| Stats for ND3 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.8 - 50.1% | 49.9 - 56.2% | 99 - 121 | 47 - 64 | 95 - 111 | 72 - 87 | 3.0 - 50.0 |
| Median | 47.6% | 52.4% | 112 | 53 | 102 | 81 | 15.0 |
| Average ± stdev | 47.6 ± 1.8% | 52.4 ± 1.8% | 112 ± 5 | 54 ± 4 | 102 ± 4 | 80 ± 3 | 17.7 ± 12.2 |
| Coefficient of variation | 0.04 | 0.03 | 0.05 | 0.09 | 0.04 | 0.05 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.36 | -0.36 | 0.12 | 0.31 | -0.20 | -0.35 | - |
| Pearson p-value (two tailed) |
1.32E-01 | 1.32E-01 | 6.17E-01 | 1.92E-01 | 4.22E-01 | 1.37E-01 | - |
| Stats for ND4 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 41.9 - 47.3% | 52.7 - 58.1% | 370 - 431 | 191 - 233 | 368 - 420 | 353 - 389 | 3.0 - 50.0 |
| Median | 45.1% | 54.9% | 414 | 209 | 387 | 369 | 15.0 |
| Average ± stdev | 45.0 ± 1.4% | 55.0 ± 1.4% | 412 ± 14 | 208 ± 10 | 388 ± 12 | 371 ± 10 | 17.7 ± 12.2 |
| Coefficient of variation | 0.03 | 0.03 | 0.03 | 0.05 | 0.03 | 0.03 | 0.69 |
| Pearson correlation coefficient with log10MLS |
-0.06 | 0.06 | -0.09 | 0.04 | -0.16 | 0.33 | - |
| Pearson p-value (two tailed) |
8.22E-01 | 8.22E-01 | 7.27E-01 | 8.60E-01 | 5.22E-01 | 1.74E-01 | - |
| Stats for ND4L (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 46.8 - 52.5% | 47.5 - 53.2% | 86 - 102 | 46 - 61 | 73 - 89 | 64 - 76 | 3.0 - 50.0 |
| Median | 49.5% | 50.5% | 97 | 50 | 79 | 70 | 15.0 |
| Average ± stdev | 49.8 ± 1.5% | 50.2 ± 1.5% | 96 ± 3 | 50 ± 3 | 78 ± 3 | 70 ± 2 | 17.7 ± 12.2 |
| Coefficient of variation | 0.03 | 0.03 | 0.04 | 0.07 | 0.04 | 0.04 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.16 | -0.16 | -0.03 | 0.23 | -0.15 | -0.07 | - |
| Pearson p-value (two tailed) |
5.08E-01 | 5.08E-01 | 9.05E-01 | 3.42E-01 | 5.46E-01 | 7.72E-01 | - |
| Stats for ND5 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 42.3 - 47.4% | 52.6 - 57.7% | 514 - 579 | 229 - 295 | 484 - 533 | 479 - 544 | 3.0 - 50.0 |
| Median | 44.2% | 55.8% | 562 | 247 | 502 | 528 | 15.0 |
| Average ± stdev | 44.4 ± 1.5% | 55.6 ± 1.5% | 558 ± 16 | 257 ± 20 | 501 ± 13 | 521 ± 20 | 17.7 ± 12.2 |
| Coefficient of variation | 0.03 | 0.03 | 0.03 | 0.08 | 0.03 | 0.04 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.20 | -0.20 | -0.09 | 0.34 | 0.20 | -0.40 | - |
| Pearson p-value (two tailed) |
4.02E-01 | 4.06E-01 | 6.99E-01 | 1.55E-01 | 4.15E-01 | 9.30E-02 | - |
| Stats for ND6 (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 46.4 - 51.3% | 48.7 - 53.6% | 171 - 189 | 64 - 82 | 65 - 81 | 187 - 202 | 3.0 - 50.0 |
| Median | 48.3% | 51.7% | 180 | 72 | 76 | 195 | 15.0 |
| Average ± stdev | 48.6 ± 1.4% | 51.4 ± 1.4% | 180 ± 4 | 72 ± 5 | 73 ± 5 | 194 ± 4 | 17.7 ± 12.2 |
| Coefficient of variation | 0.03 | 0.03 | 0.03 | 0.07 | 0.07 | 0.02 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.19 | -0.19 | 0.05 | 0.22 | -0.27 | 0.01 | - |
| Pearson p-value (two tailed) |
4.32E-01 | 4.32E-01 | 8.49E-01 | 3.56E-01 | 2.57E-01 | 9.55E-01 | - |
| Stats for 12S rRNA gene (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 49.7 - 51.0% | 49.0 - 50.3% | 256 - 261 | 212 - 222 | 185 - 195 | 276 - 288 | 3.0 - 50.0 |
| Median | 50.3% | 49.7% | 258 | 217 | 190 | 281 | 15.0 |
| Average ± stdev | 50.2 ± 0.3% | 49.8 ± 0.3% | 258 ± 1 | 217 ± 2 | 189 ± 2 | 281 ± 3 | 17.7 ± 12.2 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.16 | -0.16 | -0.01 | 0.22 | 0.18 | -0.27 | - |
| Pearson p-value (two tailed) |
5.03E-01 | 5.03E-01 | 9.69E-01 | 3.67E-01 | 4.52E-01 | 2.58E-01 | - |
| Stats for 16S rRNA gene (group size: 19 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 47.4 - 49.0% | 51.0 - 52.6% | 419 - 433 | 371 - 392 | 323 - 335 | 532 - 554 | 3.0 - 50.0 |
| Median | 48.0% | 52.0% | 426 | 384 | 328 | 544 | 15.0 |
| Average ± stdev | 48.1 ± 0.5% | 51.9 ± 0.5% | 426 ± 4 | 382 ± 6 | 328 ± 3 | 543 ± 6 | 17.7 ± 12.2 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 0.01 | 0.69 |
| Pearson correlation coefficient with log10MLS |
0.41 | -0.41 | 0.43 | 0.21 | -0.57 | -0.24 | - |
| Pearson p-value (two tailed) |
8.45E-02 | 8.45E-02 | 6.49E-02 | 3.80E-01 | 1.05E-02 | 3.21E-01 | - |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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