Stats for family Petromyzontidae
Species in family:
| Stats for total mtDNA (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.1 - 38.6% | 61.4 - 62.9% | 3863 - 3943 | 2071 - 2297 | 4788 - 4979 | 5124 - 5386 | 4.0 - 10.0 |
| Median | 37.9% | 62.2% | 3932 | 2291 | 4929 | 5227 | 8.0 |
| Average ± stdev | 37.8 ± 0.6% | 62.2 ± 0.6% | 3915 ± 28 | 2233 ± 82 | 4881 ± 72 | 5219 ± 86 | 7.7 ± 1.9 |
| Coefficient of variation | 0.02 | 0.01 | 0.01 | 0.04 | 0.01 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.10 | -0.10 | -0.30 | -0.24 | -0.69 | -0.24 | - |
| Pearson p-value (two tailed) |
8.47E-01 | 8.47E-01 | 5.68E-01 | 6.41E-01 | 1.29E-01 | 6.46E-01 | - |
| Stats for total protein-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 36.7 - 38.3% | 61.7 - 63.3% | 2776 - 2863 | 1316 - 1496 | 3492 - 3606 | 3530 - 3698 | 4.0 - 10.0 |
| Median | 37.6% | 62.6% | 2851 | 1450 | 3553 | 3547 | 8.0 |
| Average ± stdev | 37.5 ± 0.7% | 62.5 ± 0.7% | 2831 ± 31 | 1432 ± 60 | 3535 ± 43 | 3574 ± 59 | 7.7 ± 1.9 |
| Coefficient of variation | 0.02 | 0.01 | 0.01 | 0.04 | 0.01 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.12 | -0.12 | 0.30 | 0.02 | -0.35 | 0.16 | - |
| Pearson p-value (two tailed) |
8.15E-01 | 8.15E-01 | 5.68E-01 | 9.69E-01 | 4.96E-01 | 7.60E-01 | - |
| Stats for D-loop (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Stats for total tRNA-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.5 - 39.8% | 60.2 - 62.5% | 334 - 349 | 237 - 268 | 425 - 439 | 493 - 518 | 4.0 - 10.0 |
| Median | 39.5% | 60.7% | 340 | 264 | 430 | 497 | 8.0 |
| Average ± stdev | 39.2 ± 0.8% | 60.8 ± 0.8% | 340 ± 4 | 258 ± 10 | 430 ± 4 | 499 ± 8 | 7.7 ± 1.9 |
| Coefficient of variation | 0.02 | 0.01 | 0.01 | 0.04 | 0.01 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
-0.20 | 0.20 | 0.27 | -0.36 | -0.02 | 0.25 | - |
| Pearson p-value (two tailed) |
7.08E-01 | 7.08E-01 | 6.10E-01 | 4.83E-01 | 9.74E-01 | 6.40E-01 | - |
| Stats for total rRNA-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 39.4 - 41.0% | 59.0 - 60.6% | 558 - 578 | 431 - 458 | 595 - 614 | 881 - 920 | 4.0 - 10.0 |
| Median | 40.7% | 59.4% | 571 | 453 | 605 | 886 | 8.0 |
| Average ± stdev | 40.5 ± 0.6% | 59.5 ± 0.6% | 569 ± 7 | 448 ± 8 | 604 ± 6 | 894 ± 14 | 7.7 ± 1.9 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.03 | -0.03 | 0.35 | -0.18 | -0.83 | 0.40 | - |
| Pearson p-value (two tailed) |
9.60E-01 | 9.60E-01 | 4.97E-01 | 7.33E-01 | 4.05E-02 | 4.32E-01 | - |
| Stats for ATP6 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.2 - 37.1% | 62.9 - 65.8% | 165 - 189 | 57 - 76 | 218 - 235 | 211 - 225 | 4.0 - 10.0 |
| Median | 36.6% | 64.4% | 178 | 73 | 226 | 219 | 8.0 |
| Average ± stdev | 35.8 ± 1.2% | 64.2 ± 1.2% | 178 ± 7 | 69 ± 6 | 225 ± 6 | 218 ± 4 | 7.7 ± 1.9 |
| Coefficient of variation | 0.03 | 0.02 | 0.04 | 0.10 | 0.03 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
-0.45 | 0.45 | -0.58 | -0.54 | -0.84 | 0.03 | - |
| Pearson p-value (two tailed) |
3.66E-01 | 3.66E-01 | 2.29E-01 | 2.64E-01 | 3.49E-02 | 9.48E-01 | - |
| Stats for ATP8 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 35.1 - 37.5% | 62.5 - 64.9% | 45 - 51 | 11 - 17 | 48 - 52 | 57 - 58 | 4.0 - 10.0 |
| Median | 36.9% | 63.1% | 48 | 15 | 49 | 57 | 8.0 |
| Average ± stdev | 36.7 ± 0.9% | 63.3 ± 0.9% | 47 ± 2 | 14 ± 2 | 49 ± 1 | 57 ± 0 | 7.7 ± 1.9 |
| Coefficient of variation | 0.02 | 0.01 | 0.04 | 0.15 | 0.03 | 0.01 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.16 | -0.16 | 0.61 | -0.49 | 0.05 | -0.64 | - |
| Pearson p-value (two tailed) |
7.55E-01 | 7.55E-01 | 1.96E-01 | 3.23E-01 | 9.22E-01 | 1.74E-01 | - |
| Stats for COX1 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 38.7 - 40.2% | 59.8 - 61.3% | 357 - 375 | 237 - 249 | 490 - 513 | 439 - 460 | 4.0 - 10.0 |
| Median | 39.0% | 61.2% | 365 | 245 | 510 | 441 | 8.0 |
| Average ± stdev | 39.1 ± 0.6% | 60.9 ± 0.6% | 364 ± 6 | 244 ± 3 | 502 ± 9 | 443 ± 7 | 7.7 ± 1.9 |
| Coefficient of variation | 0.01 | 0.01 | 0.02 | 0.02 | 0.02 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.49 | -0.49 | 0.59 | 0.02 | -0.45 | 0.05 | - |
| Pearson p-value (two tailed) |
3.21E-01 | 3.21E-01 | 2.20E-01 | 9.70E-01 | 3.68E-01 | 9.26E-01 | - |
| Stats for COX2 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.1 - 39.6% | 60.4 - 62.9% | 156 - 168 | 89 - 104 | 197 - 216 | 216 - 229 | 4.0 - 10.0 |
| Median | 38.1% | 62.0% | 167 | 100 | 205 | 220 | 8.0 |
| Average ± stdev | 38.2 ± 1.0% | 61.8 ± 1.0% | 164 ± 4 | 98 ± 5 | 205 ± 5 | 220 ± 4 | 7.7 ± 1.9 |
| Coefficient of variation | 0.03 | 0.02 | 0.03 | 0.05 | 0.03 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
-0.52 | 0.52 | -0.04 | -0.43 | 0.44 | 0.46 | - |
| Pearson p-value (two tailed) |
2.85E-01 | 2.85E-01 | 9.41E-01 | 3.91E-01 | 3.86E-01 | 3.63E-01 | - |
| Stats for COX3 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 41.6 - 42.6% | 57.4 - 58.4% | 208 - 212 | 116 - 126 | 234 - 239 | 216 - 224 | 4.0 - 10.0 |
| Median | 42.4% | 57.8% | 210 | 123 | 235 | 220 | 8.0 |
| Average ± stdev | 42.2 ± 0.4% | 57.8 ± 0.4% | 210 ± 1 | 121 ± 3 | 235 ± 1 | 219 ± 2 | 7.7 ± 1.9 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.03 | 0.01 | 0.01 | 0.25 |
| Pearson correlation coefficient with log10MLS |
-0.16 | 0.16 | -0.02 | -0.12 | 0.05 | 0.15 | - |
| Pearson p-value (two tailed) |
7.59E-01 | 7.59E-01 | 9.63E-01 | 8.21E-01 | 9.23E-01 | 7.82E-01 | - |
| Stats for CYTB (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 35.3 - 38.8% | 61.2 - 64.7% | 262 - 285 | 149 - 181 | 388 - 417 | 331 - 360 | 4.0 - 10.0 |
| Median | 38.0% | 62.9% | 279 | 173 | 402 | 344 | 8.0 |
| Average ± stdev | 37.3 ± 1.2% | 62.7 ± 1.2% | 276 ± 7 | 167 ± 10 | 401 ± 8 | 343 ± 9 | 7.7 ± 1.9 |
| Coefficient of variation | 0.03 | 0.02 | 0.03 | 0.06 | 0.02 | 0.03 | 0.25 |
| Pearson correlation coefficient with log10MLS |
-0.02 | 0.02 | 0.08 | -0.09 | -0.04 | 0.03 | - |
| Pearson p-value (two tailed) |
9.73E-01 | 9.73E-01 | 8.79E-01 | 8.63E-01 | 9.39E-01 | 9.51E-01 | - |
| Stats for ND1 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 36.2 - 38.6% | 61.4 - 63.8% | 220 - 233 | 118 - 147 | 312 - 333 | 274 - 297 | 4.0 - 10.0 |
| Median | 37.3% | 63.3% | 229 | 131 | 325 | 281 | 8.0 |
| Average ± stdev | 37.2 ± 0.9% | 62.8 ± 0.9% | 227 ± 4 | 132 ± 9 | 323 ± 6 | 282 ± 7 | 7.7 ± 1.9 |
| Coefficient of variation | 0.02 | 0.01 | 0.02 | 0.07 | 0.02 | 0.03 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.40 | -0.40 | 0.30 | 0.20 | -0.83 | 0.31 | - |
| Pearson p-value (two tailed) |
4.36E-01 | 4.36E-01 | 5.64E-01 | 7.07E-01 | 4.15E-02 | 5.49E-01 | - |
| Stats for ND2 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 33.7 - 37.5% | 62.5 - 66.3% | 247 - 268 | 100 - 125 | 312 - 336 | 336 - 359 | 4.0 - 10.0 |
| Median | 35.6% | 64.6% | 255 | 116 | 329 | 345 | 8.0 |
| Average ± stdev | 35.5 ± 1.3% | 64.5 ± 1.3% | 255 ± 6 | 115 ± 8 | 326 ± 7 | 345 ± 7 | 7.7 ± 1.9 |
| Coefficient of variation | 0.04 | 0.02 | 0.03 | 0.07 | 0.02 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.08 | -0.08 | -0.26 | 0.35 | 0.22 | -0.30 | - |
| Pearson p-value (two tailed) |
8.84E-01 | 8.84E-01 | 6.21E-01 | 5.00E-01 | 6.82E-01 | 5.59E-01 | - |
| Stats for ND3 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 38.2 - 42.2% | 57.8 - 61.8% | 90 - 100 | 43 - 48 | 114 - 126 | 89 - 100 | 4.0 - 10.0 |
| Median | 39.1% | 61.0% | 92 | 45 | 120 | 93 | 8.0 |
| Average ± stdev | 39.4 ± 1.4% | 60.6 ± 1.4% | 93 ± 3 | 44 ± 1 | 119 ± 4 | 93 ± 3 | 7.7 ± 1.9 |
| Coefficient of variation | 0.04 | 0.02 | 0.03 | 0.04 | 0.03 | 0.04 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.36 | -0.36 | 0.31 | 0.32 | -0.71 | 0.33 | - |
| Pearson p-value (two tailed) |
4.90E-01 | 4.90E-01 | 5.47E-01 | 5.39E-01 | 1.12E-01 | 5.19E-01 | - |
| Stats for ND4 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.8 - 37.2% | 62.8 - 65.2% | 346 - 361 | 132 - 153 | 440 - 454 | 420 - 452 | 4.0 - 10.0 |
| Median | 36.1% | 64.1% | 354 | 143 | 451 | 432 | 8.0 |
| Average ± stdev | 36.1 ± 0.8% | 63.9 ± 0.8% | 353 ± 5 | 143 ± 6 | 447 ± 4 | 432 ± 9 | 7.7 ± 1.9 |
| Coefficient of variation | 0.02 | 0.01 | 0.02 | 0.04 | 0.01 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.32 | -0.32 | 0.50 | 0.09 | -0.37 | -0.15 | - |
| Pearson p-value (two tailed) |
5.39E-01 | 5.39E-01 | 3.18E-01 | 8.65E-01 | 4.74E-01 | 7.71E-01 | - |
| Stats for ND4L (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.1 - 41.2% | 58.8 - 62.9% | 78 - 88 | 29 - 34 | 83 - 90 | 85 - 94 | 4.0 - 10.0 |
| Median | 38.5% | 61.5% | 81 | 33 | 90 | 90 | 8.0 |
| Average ± stdev | 38.9 ± 1.4% | 61.1 ± 1.4% | 81 ± 3 | 32 ± 1 | 87 ± 2 | 90 ± 3 | 7.7 ± 1.9 |
| Coefficient of variation | 0.04 | 0.02 | 0.04 | 0.05 | 0.03 | 0.04 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.56 | -0.56 | 0.19 | 0.92 | 0.06 | -0.72 | - |
| Pearson p-value (two tailed) |
2.49E-01 | 2.49E-01 | 7.15E-01 | 8.46E-03 | 9.07E-01 | 1.04E-01 | - |
| Stats for ND5 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 34.3 - 37.8% | 62.2 - 65.7% | 428 - 467 | 185 - 213 | 526 - 564 | 591 - 617 | 4.0 - 10.0 |
| Median | 36.8% | 63.3% | 457 | 205 | 542 | 599 | 8.0 |
| Average ± stdev | 36.3 ± 1.3% | 63.7 ± 1.3% | 451 ± 12 | 200 ± 10 | 542 ± 12 | 602 ± 10 | 7.7 ± 1.9 |
| Coefficient of variation | 0.04 | 0.02 | 0.03 | 0.05 | 0.02 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
-0.14 | 0.14 | -0.16 | -0.09 | 0.09 | 0.18 | - |
| Pearson p-value (two tailed) |
7.97E-01 | 7.97E-01 | 7.55E-01 | 8.66E-01 | 8.64E-01 | 7.33E-01 | - |
| Stats for ND6 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.2 - 40.3% | 59.7 - 62.8% | 131 - 156 | 53 - 62 | 70 - 84 | 230 - 245 | 4.0 - 10.0 |
| Median | 38.5% | 61.8% | 141 | 57 | 81 | 240 | 8.0 |
| Average ± stdev | 38.5 ± 1.1% | 61.5 ± 1.1% | 141 ± 7 | 57 ± 3 | 78 ± 4 | 238 ± 4 | 7.7 ± 1.9 |
| Coefficient of variation | 0.03 | 0.02 | 0.05 | 0.06 | 0.06 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.54 | -0.54 | 0.46 | 0.65 | -0.37 | 0.92 | - |
| Pearson p-value (two tailed) |
2.72E-01 | 2.72E-01 | 3.59E-01 | 1.65E-01 | 4.75E-01 | 9.14E-03 | - |
| Stats for 12S rRNA gene (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 43.7 - 45.6% | 54.4 - 56.3% | 229 - 240 | 161 - 172 | 197 - 202 | 294 - 302 | 4.0 - 10.0 |
| Median | 45.0% | 55.3% | 234 | 171 | 200 | 297 | 8.0 |
| Average ± stdev | 44.8 ± 0.6% | 55.2 ± 0.6% | 234 ± 4 | 168 ± 3 | 199 ± 1 | 297 ± 2 | 7.7 ± 1.9 |
| Coefficient of variation | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 0.01 | 0.25 |
| Pearson correlation coefficient with log10MLS |
0.27 | -0.27 | 0.59 | -0.21 | -0.90 | 0.19 | - |
| Pearson p-value (two tailed) |
6.09E-01 | 6.09E-01 | 2.18E-01 | 6.94E-01 | 1.58E-02 | 7.22E-01 | - |
| Stats for 16S rRNA gene (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.0 - 38.5% | 61.5 - 63.0% | 329 - 339 | 270 - 286 | 398 - 412 | 585 - 618 | 4.0 - 10.0 |
| Median | 38.3% | 61.7% | 337 | 282 | 407 | 592 | 8.0 |
| Average ± stdev | 38.1 ± 0.6% | 61.9 ± 0.6% | 335 ± 3 | 280 ± 5 | 405 ± 5 | 596 ± 12 | 7.7 ± 1.9 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 0.02 | 0.25 |
| Pearson correlation coefficient with log10MLS |
-0.13 | 0.13 | 0.00 | -0.16 | -0.75 | 0.44 | - |
| Pearson p-value (two tailed) |
8.07E-01 | 8.07E-01 | 9.93E-01 | 7.65E-01 | 8.45E-02 | 3.81E-01 | - |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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