Stats for family Phocidae

Species in family:
Halichoerus grypus
Phoca vitulina
Pusa hispida
Pusa sibirica
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Stats for total mtDNA (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 41.7 58.3 4616 2403 4257 5550 47.6
Halichoerus grypus 41.7 58.3 4612 2398 4250 5537 42.9
Pusa hispida 41.3 58.7 4551 2368 4287 5548 46.0
Pusa sibirica 41.9 58.1 4590 2434 4254 5495 56.0
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Stats for total protein-coding genes (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 42.3 57.7 3313 1490 2940 3607 47.6
Halichoerus grypus 42.3 57.7 3316 1487 2942 3605 42.9
Pusa hispida 42.1 57.9 3305 1468 2949 3618 46.0
Pusa sibirica 42.5 57.5 3315 1503 2938 3584 56.0
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Stats for D-loop (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pusa hispida 42.5 57.5 350 211 341 417 46.0
Pusa sibirica 45.1 54.9 369 233 328 404 56.0
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Stats for total tRNA-coding genes (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 37.7 62.3 332 236 404 535 47.6
Halichoerus grypus 37.7 62.3 329 239 408 531 42.9
Pusa hispida 37.3 62.7 325 238 413 532 46.0
Pusa sibirica 37.6 62.4 329 239 410 531 56.0
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Stats for total rRNA-coding genes (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 39.7 60.3 559 443 569 955 47.6
Halichoerus grypus 39.7 60.3 563 442 568 956 42.9
Pusa hispida 39.4 60.6 557 440 573 962 46.0
Pusa sibirica 39.8 60.2 562 447 568 957 56.0
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Stats for ATP6 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 42.0 58.0 210 76 190 205 47.6
Halichoerus grypus 42.0 58.0 209 77 191 204 42.9
Pusa hispida 41.6 58.4 207 76 192 206 46.0
Pusa sibirica 42.7 57.3 213 78 187 203 56.0
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Stats for ATP8 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 37.3 62.7 57 19 51 77 47.6
Halichoerus grypus 37.3 62.7 59 17 50 78 42.9
Pusa hispida 36.8 63.2 59 16 49 80 46.0
Pusa sibirica 39.2 60.8 59 21 50 74 56.0
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Stats for COX1 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 44.0 56.0 400 280 444 421 47.6
Halichoerus grypus 43.7 56.3 397 278 447 423 42.9
Pusa hispida 44.2 55.8 405 278 438 424 46.0
Pusa sibirica 43.9 56.1 397 281 447 420 56.0
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Stats for COX2 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 42.1 57.9 188 100 164 232 47.6
Halichoerus grypus 41.7 58.3 183 102 169 230 42.9
Pusa hispida 40.9 59.1 182 98 170 234 46.0
Pusa sibirica 41.4 58.6 180 103 173 228 56.0
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Stats for COX3 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 44.4 55.6 230 118 220 216 47.6
Halichoerus grypus 44.4 55.6 230 118 218 218 42.9
Pusa hispida 44.0 56.0 229 116 222 217 46.0
Pusa sibirica 44.8 55.2 234 117 215 218 56.0
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Stats for CYTB (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 43.9 56.1 349 152 285 354 47.6
Halichoerus grypus 44.3 55.7 350 155 283 352 42.9
Pusa hispida 43.4 56.6 348 147 288 357 46.0
Pusa sibirica 44.2 55.8 350 154 286 350 56.0
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Stats for ND1 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 43.2 56.8 295 118 245 299 47.6
Halichoerus grypus 42.8 57.2 294 116 246 301 42.9
Pusa hispida 42.7 57.3 289 119 251 297 46.0
Pusa sibirica 43.3 56.7 293 121 247 295 56.0
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Stats for ND2 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 39.4 60.6 304 107 256 377 47.6
Halichoerus grypus 39.8 60.2 304 111 257 372 42.9
Pusa hispida 39.5 60.5 307 105 252 378 46.0
Pusa sibirica 39.6 60.4 305 108 254 375 56.0
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Stats for ND3 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 44.2 55.8 109 44 86 107 47.6
Halichoerus grypus 43.6 56.4 108 43 87 108 42.9
Pusa hispida 44.7 55.3 110 45 85 107 46.0
Pusa sibirica 44.1 55.9 110 43 85 109 56.0
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Stats for ND4 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 42.2 57.8 415 167 353 443 47.6
Halichoerus grypus 42.4 57.6 415 169 355 439 42.9
Pusa hispida 42.2 57.8 413 169 356 441 46.0
Pusa sibirica 42.4 57.6 413 172 356 438 56.0
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Stats for ND4L (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 40.1 59.9 79 40 92 86 47.6
Halichoerus grypus 41.4 58.6 82 41 89 85 42.9
Pusa hispida 41.1 58.9 82 40 89 86 46.0
Pusa sibirica 41.4 58.6 80 43 91 83 56.0
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Stats for ND5 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 41.8 58.2 543 222 477 588 47.6
Halichoerus grypus 41.7 58.3 550 214 473 593 42.9
Pusa hispida 41.5 58.5 543 212 477 589 46.0
Pusa sibirica 41.8 58.2 546 215 471 589 56.0
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Stats for ND6 (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 39.0 61.0 152 54 96 226 47.6
Halichoerus grypus 38.8 61.2 153 52 96 227 42.9
Pusa hispida 38.3 61.7 149 53 99 227 46.0
Pusa sibirica 39.4 60.6 153 55 95 225 56.0
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Stats for 12S rRNA gene (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 41.1 58.9 229 166 211 355 47.6
Halichoerus grypus 41.7 58.3 232 168 205 355 42.9
Pusa hispida 41.3 58.7 229 168 210 354 46.0
Pusa sibirica 41.6 58.4 229 171 211 350 56.0
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Stats for 16S rRNA gene (group size: 4 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Phoca vitulina 38.8 61.2 330 277 358 600 47.6
Halichoerus grypus 38.6 61.4 331 274 363 601 42.9
Pusa hispida 38.2 61.8 328 272 363 608 46.0
Pusa sibirica 38.7 61.3 333 276 357 607 56.0
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.