Viewing data for Halichoerus grypus


Scientific name Halichoerus grypus
Common name Gray seal
Maximum lifespan 42.90 years (Halichoerus grypus@AnAge)

Total mtDNA (size: 16797 bases) GC AT G C A T
Base content (bases) 7010 9787 4612 2398 4250 5537
Base content per 1 kb (bases) 417 583 275 143 253 330
Base content (%) 41.7% 58.3%
Total protein-coding genes (size: 11350 bases) GC AT G C A T
Base content (bases) 4803 6547 3316 1487 2942 3605
Base content per 1 kb (bases) 423 577 292 131 259 318
Base content (%) 42.3% 57.7%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1507 bases) GC AT G C A T
Base content (bases) 568 939 329 239 408 531
Base content per 1 kb (bases) 377 623 218 159 271 352
Base content (%) 37.7% 62.3%
Total rRNA-coding genes (size: 2529 bases) GC AT G C A T
Base content (bases) 1005 1524 563 442 568 956
Base content per 1 kb (bases) 397 603 223 175 225 378
Base content (%) 39.7% 60.3%
12S rRNA gene (size: 960 bases) GC AT G C A T
Base content (bases) 400 560 232 168 205 355
Base content per 1 kb (bases) 417 583 242 175 214 370
Base content (%) 41.7% 58.3%
16S rRNA gene (size: 1569 bases) GC AT G C A T
Base content (bases) 605 964 331 274 363 601
Base content per 1 kb (bases) 386 614 211 175 231 383
Base content (%) 38.6% 61.4%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 286 395 209 77 191 204
Base content per 1 kb (bases) 420 580 307 113 280 300
Base content (%) 42.0% 58.0%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 76 128 59 17 50 78
Base content per 1 kb (bases) 373 627 289 83 245 382
Base content (%) 37.3% 62.7%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 675 870 397 278 447 423
Base content per 1 kb (bases) 437 563 257 180 289 274
Base content (%) 43.7% 56.3%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 285 399 183 102 169 230
Base content per 1 kb (bases) 417 583 268 149 247 336
Base content (%) 41.7% 58.3%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 348 436 230 118 218 218
Base content per 1 kb (bases) 444 556 293 151 278 278
Base content (%) 44.4% 55.6%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 505 635 350 155 283 352
Base content per 1 kb (bases) 443 557 307 136 248 309
Base content (%) 44.3% 55.7%
ND1 (size: 957 bases) GC AT G C A T
Base content (bases) 410 547 294 116 246 301
Base content per 1 kb (bases) 428 572 307 121 257 315
Base content (%) 42.8% 57.2%
ND2 (size: 1044 bases) GC AT G C A T
Base content (bases) 415 629 304 111 257 372
Base content per 1 kb (bases) 398 602 291 106 246 356
Base content (%) 39.8% 60.2%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 151 195 108 43 87 108
Base content per 1 kb (bases) 436 564 312 124 251 312
Base content (%) 43.6% 56.4%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 584 794 415 169 355 439
Base content per 1 kb (bases) 424 576 301 123 258 319
Base content (%) 42.4% 57.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 123 174 82 41 89 85
Base content per 1 kb (bases) 414 586 276 138 300 286
Base content (%) 41.4% 58.6%
ND5 (size: 1830 bases) GC AT G C A T
Base content (bases) 764 1066 550 214 473 593
Base content per 1 kb (bases) 417 583 301 117 258 324
Base content (%) 41.7% 58.3%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 205 323 153 52 96 227
Base content per 1 kb (bases) 388 612 290 98 182 430
Base content (%) 38.8% 61.2%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 16 (7.08%)
Serine (Ser, S)
n = 14 (6.19%)
Threonine (Thr, T)
n = 25 (11.06%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.98%)
Leucine (Leu, L)
n = 43 (19.03%)
Isoleucine (Ile, I)
n = 27 (11.95%)
Methionine (Met, M)
n = 10 (4.42%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 13 (5.75%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 3 (1.33%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 9 (3.98%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 8 (3.54%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 14 7 7 6 19 5 5 8 1 0 3 4 2 4 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 3 8 5 0 3 1 7 0 5 5 3 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 9 1 2 3 5 0 0 4 2 0 0 1 5 4 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 3 0 0 3 4 0 0 1 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
42 71 79 35
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 64 39 102
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 74 86 54
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWLIMISSMILTLFITFHLKVSKHYFPTNPEPKHTLLLKNSAPWEEKWTKIYSPLSLPLQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.49%)
Serine (Ser, S)
n = 7 (10.45%)
Threonine (Thr, T)
n = 7 (10.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.49%)
Leucine (Leu, L)
n = 11 (16.42%)
Isoleucine (Ile, I)
n = 5 (7.46%)
Methionine (Met, M)
n = 3 (4.48%)
Proline (Pro, P)
n = 7 (10.45%)
Phenylalanine (Phe, F)
n = 3 (4.48%)
Tyrosine (Tyr, Y)
n = 2 (2.99%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 3 (4.48%)
Asparagine (Asn, N)
n = 2 (2.99%)
Glutamine (Gln, Q)
n = 2 (2.99%)
Histidine (His, H)
n = 3 (4.48%)
Lysine (Lys, K)
n = 6 (8.96%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 4 2 1 1 5 1 3 1 1 0 1 0 0 1 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 1 0 0 0 0 0 1 2 4 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 3 1 1 3 1 1 0 1 1 0 0 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 0 1 0 6 0 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 20 24 18
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 21 20 23
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 18 34 9
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 43 (8.37%)
Serine (Ser, S)
n = 30 (5.84%)
Threonine (Thr, T)
n = 38 (7.39%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 38 (7.39%)
Leucine (Leu, L)
n = 59 (11.48%)
Isoleucine (Ile, I)
n = 36 (7.0%)
Methionine (Met, M)
n = 33 (6.42%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 42 (8.17%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 16 (3.11%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 16 (3.11%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 18 23 6 6 24 11 10 6 0 5 9 19 5 10 32
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 1 0 9 12 21 1 5 16 17 9 11 9 6 2 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 17 2 6 9 12 0 2 1 10 9 1 2 8 8 12
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 9 1 6 10 6 3 0 1 6 1 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
154 107 135 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 136 95 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
48 154 193 120
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 8 (3.52%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 12 (5.29%)
Leucine (Leu, L)
n = 35 (15.42%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 17 (7.49%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 5 (2.2%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 6 (2.64%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 9 11 2 7 16 3 4 5 2 0 3 7 2 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 1 2 3 3 0 2 1 5 0 3 4 5 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 9 1 3 2 9 1 1 3 1 9 0 3 2 4 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 12 3 4 6 3 2 0 1 5 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 62 68 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 54 62 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 67 100 37
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 14 (5.38%)
Serine (Ser, S)
n = 20 (7.69%)
Threonine (Thr, T)
n = 23 (8.85%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 30 (11.54%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 13 (5.0%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 7 (2.69%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 7 7 3 5 15 4 3 6 1 0 6 9 0 6 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 2 3 6 5 0 5 6 9 0 3 5 4 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 8 0 5 4 7 0 2 2 2 10 0 0 1 6 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 2 1 2 2 1 0 1 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 67 65 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 65 56 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 98 97 52
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 23 (6.07%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 27 (7.12%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 18 (4.75%)
Leucine (Leu, L)
n = 59 (15.57%)
Isoleucine (Ile, I)
n = 43 (11.35%)
Methionine (Met, M)
n = 13 (3.43%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 24 (6.33%)
Tyrosine (Tyr, Y)
n = 16 (4.22%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 12 (3.17%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 7 (1.85%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 33 10 6 9 30 6 7 6 1 0 5 11 2 5 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 4 2 10 11 0 1 5 19 1 1 12 8 2 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 15 1 2 4 14 0 0 3 5 11 0 1 6 10 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 4 1 0 12 9 0 1 0 6 0 1 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 100 112 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 93 77 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 157 163 42
ND1 (size: 957 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.77%)
Alanine (Ala, A)
n = 29 (9.12%)
Serine (Ser, S)
n = 19 (5.97%)
Threonine (Thr, T)
n = 23 (7.23%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 17 (5.35%)
Leucine (Leu, L)
n = 54 (16.98%)
Isoleucine (Ile, I)
n = 28 (8.81%)
Methionine (Met, M)
n = 19 (5.97%)
Proline (Pro, P)
n = 22 (6.92%)
Phenylalanine (Phe, F)
n = 21 (6.6%)
Tyrosine (Tyr, Y)
n = 12 (3.77%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 13 (4.09%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 7 (2.2%)
Arginine (Arg, R)
n = 8 (2.52%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 18 16 4 7 34 2 7 6 0 0 6 9 2 7 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 0 4 14 11 0 0 2 10 0 3 11 7 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 10 0 1 5 11 0 0 2 3 9 1 0 1 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 11 0 1 2 6 1 0 1 5 2 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 87 92 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 91 57 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 116 152 39
ND2 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 19 (5.48%)
Serine (Ser, S)
n = 32 (9.22%)
Threonine (Thr, T)
n = 33 (9.51%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 53 (15.27%)
Isoleucine (Ile, I)
n = 44 (12.68%)
Methionine (Met, M)
n = 35 (10.09%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 7 (2.02%)
Asparagine (Asn, N)
n = 15 (4.32%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 15 (4.32%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 25 30 1 11 34 5 2 6 2 1 2 4 2 2 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 3 5 9 2 1 7 7 1 4 8 9 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 17 3 1 8 17 3 1 2 3 5 1 0 3 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 7 0 1 0 14 1 0 1 2 0 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
52 89 145 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 103 60 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 112 167 42
ND3 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 19 (5.48%)
Serine (Ser, S)
n = 32 (9.22%)
Threonine (Thr, T)
n = 33 (9.51%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 53 (15.27%)
Isoleucine (Ile, I)
n = 44 (12.68%)
Methionine (Met, M)
n = 35 (10.09%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 7 (2.02%)
Asparagine (Asn, N)
n = 15 (4.32%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 15 (4.32%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 25 30 1 11 34 5 2 6 2 1 2 4 2 2 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 3 5 9 2 1 7 7 1 4 8 9 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 17 3 1 8 17 3 1 2 3 5 1 0 3 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 7 0 1 0 14 1 0 1 2 0 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
52 89 145 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 103 60 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 112 167 42
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 34 (7.42%)
Serine (Ser, S)
n = 37 (8.08%)
Threonine (Thr, T)
n = 39 (8.52%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 15 (3.28%)
Leucine (Leu, L)
n = 94 (20.52%)
Isoleucine (Ile, I)
n = 39 (8.52%)
Methionine (Met, M)
n = 36 (7.86%)
Proline (Pro, P)
n = 23 (5.02%)
Phenylalanine (Phe, F)
n = 19 (4.15%)
Tyrosine (Tyr, Y)
n = 16 (3.49%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 19 (4.15%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 8 (1.75%)
Lysine (Lys, K)
n = 13 (2.84%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 27 30 8 10 53 12 9 11 0 0 3 11 1 7 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 3 4 14 16 0 4 5 7 2 4 14 4 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 18 3 1 13 10 0 5 8 5 11 3 2 8 11 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 6 2 0 3 13 0 0 5 4 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 135 159 87
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
58 120 78 203
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 160 202 64
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 5 (5.1%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 7 (7.14%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 5 (5.1%)
Methionine (Met, M)
n = 12 (12.24%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 3 9 3 4 7 5 1 2 0 0 1 5 1 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 3 4 1 0 1 0 3 0 0 1 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 4 0 1 5 2 0 0 1 1 3 0 1 1 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
22 25 29 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 22 18 50
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 35 38 16
ND5 (size: 1830 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.43%)
Alanine (Ala, A)
n = 40 (6.57%)
Serine (Ser, S)
n = 50 (8.21%)
Threonine (Thr, T)
n = 55 (9.03%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 22 (3.61%)
Leucine (Leu, L)
n = 91 (14.94%)
Isoleucine (Ile, I)
n = 60 (9.85%)
Methionine (Met, M)
n = 39 (6.4%)
Proline (Pro, P)
n = 25 (4.11%)
Phenylalanine (Phe, F)
n = 41 (6.73%)
Tyrosine (Tyr, Y)
n = 19 (3.12%)
Tryptophan (Trp, W)
n = 12 (1.97%)
Aspartic acid (Asp, D)
n = 10 (1.64%)
Glutamic acid (Glu, E)
n = 12 (1.97%)
Asparagine (Asn, N)
n = 32 (5.25%)
Glutamine (Gln, Q)
n = 18 (2.96%)
Histidine (His, H)
n = 19 (3.12%)
Lysine (Lys, K)
n = 24 (3.94%)
Arginine (Arg, R)
n = 9 (1.48%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 38 31 9 23 40 5 14 11 7 3 6 11 2 9 32
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 4 5 16 19 0 4 4 16 3 6 7 10 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 20 3 4 15 19 1 2 9 3 16 2 0 7 25 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 7 5 5 5 22 2 0 3 6 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
111 148 221 130
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
63 159 135 253
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
40 243 237 90
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (13.14%)
Alanine (Ala, A)
n = 10 (5.71%)
Serine (Ser, S)
n = 14 (8.0%)
Threonine (Thr, T)
n = 8 (4.57%)
Cysteine (Cys, C)
n = 2 (1.14%)
Valine (Val, V)
n = 21 (12.0%)
Leucine (Leu, L)
n = 20 (11.43%)
Isoleucine (Ile, I)
n = 16 (9.14%)
Methionine (Met, M)
n = 9 (5.14%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 14 (8.0%)
Tyrosine (Tyr, Y)
n = 9 (5.14%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 6 (3.43%)
Glutamic acid (Glu, E)
n = 8 (4.57%)
Asparagine (Asn, N)
n = 3 (1.71%)
Glutamine (Gln, Q)
n = 1 (0.57%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 3 (1.71%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 1 0 4 0 2 1 5 0 1 10 1 2 8 12 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 1 1 7 1 0 2 11 1 4 7 2 1 0 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 1 6 1 1 0 5 1 8 1 2 8 3 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 7 6 0 0 3 1 0 0 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 12 45 51
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 29 31 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
49 11 20 96
Total protein-coding genes (size: 11418 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 215 (5.65%)
Alanine (Ala, A)
n = 257 (6.76%)
Serine (Ser, S)
n = 282 (7.41%)
Threonine (Thr, T)
n = 312 (8.2%)
Cysteine (Cys, C)
n = 24 (0.63%)
Valine (Val, V)
n = 187 (4.92%)
Leucine (Leu, L)
n = 596 (15.67%)
Isoleucine (Ile, I)
n = 340 (8.94%)
Methionine (Met, M)
n = 245 (6.44%)
Proline (Pro, P)
n = 198 (5.21%)
Phenylalanine (Phe, F)
n = 231 (6.07%)
Tyrosine (Tyr, Y)
n = 132 (3.47%)
Tryptophan (Trp, W)
n = 104 (2.73%)
Aspartic acid (Asp, D)
n = 72 (1.89%)
Glutamic acid (Glu, E)
n = 99 (2.6%)
Asparagine (Asn, N)
n = 148 (3.89%)
Glutamine (Gln, Q)
n = 85 (2.23%)
Histidine (His, H)
n = 104 (2.73%)
Lysine (Lys, K)
n = 101 (2.66%)
Arginine (Arg, R)
n = 63 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
141 199 182 57 94 296 60 71 68 17 19 47 94 27 70 161
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
63 7 17 46 98 108 5 37 48 106 24 44 82 62 10 49
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
109 136 18 35 71 112 7 19 38 44 88 10 18 46 102 35
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
69 78 21 26 46 87 14 2 15 42 4 1 0 8 1 94
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
830 957 1204 814
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
464 992 750 1599
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
299 1284 1545 677 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​a​l​i​c​h​o​e​r​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ g​r​y​p​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.