Stats for family Salmonidae

Species in family:
Coregonus clupeaformis
Coregonus nasus
Hucho hucho
Hucho taimen
Oncorhynchus clarkii
Oncorhynchus gorbuscha
Oncorhynchus keta
Oncorhynchus kisutch
Oncorhynchus mykiss
Oncorhynchus nerka
Oncorhynchus tshawytscha
Prosopium cylindraceum
Prosopium williamsoni
Salmo salar
Salmo trutta
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Stats for total mtDNA (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 44.4 - 47.6% 52.4 - 55.6% 4529 - 4945 2703 - 3094 4298 - 4570 4467 - 4740 3.0 - 50.0
Median 45.9% 54.1% 4817 2854 4365 4649 15.0
Average ± stdev 46.0 ± 0.8% 54.0 ± 0.8% 4807 ± 94 2874 ± 104 4387 ± 65 4623 ± 83 17.7 ± 12.2
Coefficient of variation 0.02 0.02 0.02 0.04 0.02 0.02 0.69
Pearson correlation
coefficient with log10MLS		 0.18 -0.18 0.09 0.17 -0.06 -0.22 -
Pearson p-value
(two tailed)		 4.69E-01 4.70E-01 7.22E-01 4.93E-01 7.94E-01 3.68E-01 -
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Stats for total protein-coding genes (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 44.0 - 48.1% 51.9 - 56.0% 3097 - 3569 1568 - 1967 2832 - 3319 2772 - 3110 3.0 - 50.0
Median 45.8% 54.2% 3470 1751 3149 3034 15.0
Average ± stdev 46.0 ± 1.1% 54.0 ± 1.1% 3446 ± 111 1775 ± 99 3133 ± 94 2995 ± 88 17.7 ± 12.2
Coefficient of variation 0.02 0.02 0.03 0.06 0.03 0.03 0.69
Pearson correlation
coefficient with log10MLS		 0.21 -0.21 0.23 0.27 0.15 -0.06 -
Pearson p-value
(two tailed)		 3.83E-01 3.85E-01 3.43E-01 2.56E-01 5.35E-01 8.15E-01 -
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Stats for D-loop (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 34.2 - 41.1% 58.9 - 65.8% 200 - 291 142 - 184 256 - 371 254 - 371 3.0 - 50.0
Median 38.7% 61.3% 235 158 320 320 15.0
Average ± stdev 38.6 ± 1.5% 61.4 ± 1.5% 242 ± 24 157 ± 10 317 ± 25 319 ± 25 17.7 ± 12.2
Coefficient of variation 0.04 0.02 0.10 0.06 0.08 0.08 0.69
Pearson correlation
coefficient with log10MLS		 -0.27 0.27 0.02 -0.41 -0.05 0.23 -
Pearson p-value
(two tailed)		 2.56E-01 2.56E-01 9.32E-01 8.02E-02 8.51E-01 3.48E-01 -
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Stats for total tRNA-coding genes (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 44.7 - 46.8% 53.2 - 55.3% 385 - 399 305 - 331 379 - 397 442 - 467 3.0 - 50.0
Median 45.6% 54.4% 396 310 385 460 15.0
Average ± stdev 45.6 ± 0.6% 54.4 ± 0.6% 394 ± 4 314 ± 7 386 ± 4 457 ± 6 17.7 ± 12.2
Coefficient of variation 0.01 0.01 0.01 0.02 0.01 0.01 0.69
Pearson correlation
coefficient with log10MLS		 0.08 -0.08 -0.33 0.37 0.34 -0.26 -
Pearson p-value
(two tailed)		 7.35E-01 7.35E-01 1.72E-01 1.15E-01 1.60E-01 2.92E-01 -
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Stats for total rRNA-coding genes (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 48.3 - 49.5% 50.5 - 51.7% 677 - 692 583 - 613 513 - 524 809 - 841 3.0 - 50.0
Median 48.8% 51.2% 684 600 517 826 15.0
Average ± stdev 48.9 ± 0.4% 51.1 ± 0.4% 684 ± 4 600 ± 8 518 ± 3 824 ± 9 17.7 ± 12.2
Coefficient of variation 0.01 0.01 0.01 0.01 0.01 0.01 0.69
Pearson correlation
coefficient with log10MLS		 0.40 -0.40 0.40 0.24 -0.41 -0.27 -
Pearson p-value
(two tailed)		 9.31E-02 9.31E-02 9.39E-02 3.32E-01 7.81E-02 2.60E-01 -
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Stats for ATP6 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 42.4 - 47.8% 52.2 - 57.6% 200 - 233 80 - 100 186 - 208 166 - 186 3.0 - 50.0
Median 45.5% 54.5% 219 92 202 172 15.0
Average ± stdev 45.5 ± 1.5% 54.5 ± 1.5% 219 ± 7 91 ± 5 198 ± 7 173 ± 5 17.7 ± 12.2
Coefficient of variation 0.03 0.03 0.03 0.06 0.04 0.03 0.69
Pearson correlation
coefficient with log10MLS		 0.27 -0.27 0.19 0.23 -0.18 -0.21 -
Pearson p-value
(two tailed)		 2.58E-01 2.58E-01 4.31E-01 3.46E-01 4.58E-01 3.80E-01 -
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Stats for ATP8 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 43.5 - 48.8% 51.2 - 56.5% 53 - 59 20 - 24 39 - 44 46 - 51 3.0 - 50.0
Median 45.2% 54.8% 55 22 42 50 15.0
Average ± stdev 45.9 ± 1.7% 54.1 ± 1.7% 55 ± 1 22 ± 1 41 ± 1 48 ± 1 17.7 ± 12.2
Coefficient of variation 0.04 0.03 0.03 0.06 0.03 0.03 0.69
Pearson correlation
coefficient with log10MLS		 0.21 -0.21 0.19 0.20 -0.08 -0.31 -
Pearson p-value
(two tailed)		 3.79E-01 3.79E-01 4.35E-01 4.09E-01 7.39E-01 2.01E-01 -
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Stats for COX1 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 44.3 - 47.8% 52.2 - 55.7% 405 - 439 275 - 307 447 - 487 350 - 399 3.0 - 50.0
Median 45.6% 54.4% 418 286 463 382 15.0
Average ± stdev 45.7 ± 0.9% 54.3 ± 0.9% 419 ± 8 288 ± 9 462 ± 9 380 ± 13 17.7 ± 12.2
Coefficient of variation 0.02 0.02 0.02 0.03 0.02 0.04 0.69
Pearson correlation
coefficient with log10MLS		 0.27 -0.27 0.18 0.22 0.46 -0.60 -
Pearson p-value
(two tailed)		 2.68E-01 2.68E-01 4.64E-01 3.65E-01 4.52E-02 7.12E-03 -
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Stats for COX2 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 43.8 - 45.7% 54.3 - 56.2% 186 - 198 110 - 120 187 - 203 184 - 192 3.0 - 50.0
Median 44.4% 55.6% 194 115 195 188 15.0
Average ± stdev 44.5 ± 0.6% 55.5 ± 0.6% 192 ± 3 114 ± 2 194 ± 4 188 ± 2 17.7 ± 12.2
Coefficient of variation 0.01 0.01 0.02 0.02 0.02 0.01 0.69
Pearson correlation
coefficient with log10MLS		 0.57 -0.57 0.43 0.31 -0.34 -0.30 -
Pearson p-value
(two tailed)		 1.11E-02 1.11E-02 6.80E-02 1.94E-01 1.56E-01 2.19E-01 -
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Stats for COX3 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 44.7 - 49.2% 50.8 - 55.3% 227 - 243 122 - 143 215 - 234 181 - 208 3.0 - 50.0
Median 46.9% 53.1% 234 135 227 191 15.0
Average ± stdev 47.0 ± 1.2% 53.0 ± 1.2% 234 ± 5 134 ± 4 225 ± 5 190 ± 6 17.7 ± 12.2
Coefficient of variation 0.03 0.02 0.02 0.04 0.03 0.03 0.69
Pearson correlation
coefficient with log10MLS		 -0.07 0.07 -0.00 -0.14 -0.03 0.12 -
Pearson p-value
(two tailed)		 7.79E-01 7.79E-01 9.87E-01 5.76E-01 9.10E-01 6.15E-01 -
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Stats for CYTB (group size: 18 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 44.4 - 48.2% 51.8 - 55.6% 324 - 357 170 - 199 319 - 344 263 - 293 3.0 - 50.0
Median 46.6% 53.5% 351 185 333 277 16.0
Average ± stdev 46.7 ± 1.0% 53.3 ± 1.0% 347 ± 8 185 ± 7 331 ± 7 276 ± 6 18.3 ± 12.2
Coefficient of variation 0.02 0.02 0.03 0.04 0.02 0.02 0.67
Pearson correlation
coefficient with log10MLS		 0.08 -0.08 0.11 -0.03 -0.30 0.19 -
Pearson p-value
(two tailed)		 7.66E-01 7.66E-01 6.78E-01 9.11E-01 2.27E-01 4.41E-01 -
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Stats for ND1 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 45.3 - 50.3% 49.7 - 54.7% 282 - 312 140 - 184 261 - 291 211 - 262 3.0 - 50.0
Median 47.5% 52.5% 299 161 276 241 15.0
Average ± stdev 47.3 ± 1.4% 52.7 ± 1.4% 300 ± 7 160 ± 12 274 ± 6 239 ± 12 17.7 ± 12.2
Coefficient of variation 0.03 0.03 0.02 0.08 0.03 0.05 0.69
Pearson correlation
coefficient with log10MLS		 -0.02 0.02 0.01 -0.03 0.18 -0.08 -
Pearson p-value
(two tailed)		 9.39E-01 9.31E-01 9.74E-01 9.17E-01 4.58E-01 7.60E-01 -
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Stats for ND2 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 43.5 - 48.7% 51.3 - 56.5% 313 - 367 123 - 173 264 - 301 269 - 300 3.0 - 50.0
Median 45.7% 54.3% 339 141 284 282 15.0
Average ± stdev 46.0 ± 1.5% 54.0 ± 1.5% 336 ± 13 145 ± 11 282 ± 11 284 ± 8 17.7 ± 12.2
Coefficient of variation 0.03 0.03 0.04 0.08 0.04 0.03 0.69
Pearson correlation
coefficient with log10MLS		 0.41 -0.41 0.23 0.26 -0.19 -0.49 -
Pearson p-value
(two tailed)		 7.93E-02 7.93E-02 3.45E-01 2.74E-01 4.29E-01 3.40E-02 -
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Stats for ND3 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 43.8 - 50.1% 49.9 - 56.2% 99 - 121 47 - 64 95 - 111 72 - 87 3.0 - 50.0
Median 47.6% 52.4% 112 53 102 81 15.0
Average ± stdev 47.6 ± 1.8% 52.4 ± 1.8% 112 ± 5 54 ± 4 102 ± 4 80 ± 3 17.7 ± 12.2
Coefficient of variation 0.04 0.03 0.05 0.09 0.04 0.05 0.69
Pearson correlation
coefficient with log10MLS		 0.36 -0.36 0.12 0.31 -0.20 -0.35 -
Pearson p-value
(two tailed)		 1.32E-01 1.32E-01 6.17E-01 1.92E-01 4.22E-01 1.37E-01 -
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Stats for ND4 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 41.9 - 47.3% 52.7 - 58.1% 370 - 431 191 - 233 368 - 420 353 - 389 3.0 - 50.0
Median 45.1% 54.9% 414 209 387 369 15.0
Average ± stdev 45.0 ± 1.4% 55.0 ± 1.4% 412 ± 14 208 ± 10 388 ± 12 371 ± 10 17.7 ± 12.2
Coefficient of variation 0.03 0.03 0.03 0.05 0.03 0.03 0.69
Pearson correlation
coefficient with log10MLS		 -0.06 0.06 -0.09 0.04 -0.16 0.33 -
Pearson p-value
(two tailed)		 8.22E-01 8.22E-01 7.27E-01 8.60E-01 5.22E-01 1.74E-01 -
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Stats for ND4L (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 46.8 - 52.5% 47.5 - 53.2% 86 - 102 46 - 61 73 - 89 64 - 76 3.0 - 50.0
Median 49.5% 50.5% 97 50 79 70 15.0
Average ± stdev 49.8 ± 1.5% 50.2 ± 1.5% 96 ± 3 50 ± 3 78 ± 3 70 ± 2 17.7 ± 12.2
Coefficient of variation 0.03 0.03 0.04 0.07 0.04 0.04 0.69
Pearson correlation
coefficient with log10MLS		 0.16 -0.16 -0.03 0.23 -0.15 -0.07 -
Pearson p-value
(two tailed)		 5.08E-01 5.08E-01 9.05E-01 3.42E-01 5.46E-01 7.72E-01 -
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Stats for ND5 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 42.3 - 47.4% 52.6 - 57.7% 514 - 579 229 - 295 484 - 533 479 - 544 3.0 - 50.0
Median 44.2% 55.8% 562 247 502 528 15.0
Average ± stdev 44.4 ± 1.5% 55.6 ± 1.5% 558 ± 16 257 ± 20 501 ± 13 521 ± 20 17.7 ± 12.2
Coefficient of variation 0.03 0.03 0.03 0.08 0.03 0.04 0.69
Pearson correlation
coefficient with log10MLS		 0.20 -0.20 -0.09 0.34 0.20 -0.40 -
Pearson p-value
(two tailed)		 4.02E-01 4.06E-01 6.99E-01 1.55E-01 4.15E-01 9.30E-02 -
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Stats for ND6 (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 46.4 - 51.3% 48.7 - 53.6% 171 - 189 64 - 82 65 - 81 187 - 202 3.0 - 50.0
Median 48.3% 51.7% 180 72 76 195 15.0
Average ± stdev 48.6 ± 1.4% 51.4 ± 1.4% 180 ± 4 72 ± 5 73 ± 5 194 ± 4 17.7 ± 12.2
Coefficient of variation 0.03 0.03 0.03 0.07 0.07 0.02 0.69
Pearson correlation
coefficient with log10MLS		 0.19 -0.19 0.05 0.22 -0.27 0.01 -
Pearson p-value
(two tailed)		 4.32E-01 4.32E-01 8.49E-01 3.56E-01 2.57E-01 9.55E-01 -
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Stats for 12S rRNA gene (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 49.7 - 51.0% 49.0 - 50.3% 256 - 261 212 - 222 185 - 195 276 - 288 3.0 - 50.0
Median 50.3% 49.7% 258 217 190 281 15.0
Average ± stdev 50.2 ± 0.3% 49.8 ± 0.3% 258 ± 1 217 ± 2 189 ± 2 281 ± 3 17.7 ± 12.2
Coefficient of variation 0.01 0.01 0.01 0.01 0.01 0.01 0.69
Pearson correlation
coefficient with log10MLS		 0.16 -0.16 -0.01 0.22 0.18 -0.27 -
Pearson p-value
(two tailed)		 5.03E-01 5.03E-01 9.69E-01 3.67E-01 4.52E-01 2.58E-01 -
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Stats for 16S rRNA gene (group size: 19 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 47.4 - 49.0% 51.0 - 52.6% 419 - 433 371 - 392 323 - 335 532 - 554 3.0 - 50.0
Median 48.0% 52.0% 426 384 328 544 15.0
Average ± stdev 48.1 ± 0.5% 51.9 ± 0.5% 426 ± 4 382 ± 6 328 ± 3 543 ± 6 17.7 ± 12.2
Coefficient of variation 0.01 0.01 0.01 0.02 0.01 0.01 0.69
Pearson correlation
coefficient with log10MLS		 0.41 -0.41 0.43 0.21 -0.57 -0.24 -
Pearson p-value
(two tailed)		 8.45E-02 8.45E-02 6.49E-02 3.80E-01 1.05E-02 3.21E-01 -
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.