Stats for family Catostomidae

Species in family:
Carpiodes carpio
Catostomus commersonii
Cycleptus elongatus
Erimyzon oblongus
Hypentelium nigricans
Ictiobus bubalus
Ictiobus cyprinellus
Minytrema melanops
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Stats for total mtDNA (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 42.7 - 45.8% 54.2 - 57.3% 4210 - 4644 2783 - 3057 4129 - 4618 4750 - 5063 6.0 - 20.0
Median 44.1% 56.9% 4424 2927 4469 4884 12.0
Average ± stdev 44.1 ± 1.4% 55.9 ± 1.4% 4413 ± 167 2921 ± 73 4381 ± 183 4903 ± 84 11.6 ± 4.3
Coefficient of variation 0.03 0.03 0.04 0.02 0.04 0.02 0.37
Pearson correlation
coefficient with log10MLS		 0.65 -0.65 0.63 0.52 -0.65 -0.32 -
Pearson p-value
(two tailed)		 8.02E-02 8.02E-02 9.44E-02 1.91E-01 7.84E-02 4.36E-01 -
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Stats for total protein-coding genes (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 42.2 - 46.3% 53.7 - 57.8% 2981 - 3374 1734 - 1975 2929 - 3375 3106 - 3372 6.0 - 20.0
Median 44.1% 57.1% 3185 1850 3227 3220 12.0
Average ± stdev 44.0 ± 1.8% 56.0 ± 1.8% 3171 ± 149 1852 ± 64 3150 ± 162 3235 ± 72 11.6 ± 4.3
Coefficient of variation 0.04 0.03 0.05 0.03 0.05 0.02 0.37
Pearson correlation
coefficient with log10MLS		 0.62 -0.62 0.61 0.48 -0.62 -0.30 -
Pearson p-value
(two tailed)		 1.02E-01 1.02E-01 1.10E-01 2.32E-01 1.00E-01 4.76E-01 -
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Stats for D-loop (group size: 3 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
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Stats for total tRNA-coding genes (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 44.6 - 45.4% 54.6 - 55.4% 376 - 393 313 - 323 386 - 398 458 - 480 6.0 - 20.0
Median 45.2% 55.0% 387 319 393 465 12.0
Average ± stdev 45.1 ± 0.3% 54.9 ± 0.3% 385 ± 5 319 ± 3 392 ± 3 465 ± 6 11.6 ± 4.3
Coefficient of variation 0.01 0.01 0.01 0.01 0.01 0.01 0.37
Pearson correlation
coefficient with log10MLS		 0.62 -0.62 0.20 0.39 0.05 -0.60 -
Pearson p-value
(two tailed)		 1.01E-01 1.01E-01 6.36E-01 3.39E-01 9.07E-01 1.18E-01 -
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Stats for total rRNA-coding genes (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 45.8 - 47.2% 52.8 - 54.2% 624 - 660 579 - 596 517 - 553 861 - 883 6.0 - 20.0
Median 46.6% 53.6% 646 586 537 876 12.0
Average ± stdev 46.6 ± 0.5% 53.4 ± 0.5% 641 ± 13 586 ± 4 533 ± 12 873 ± 7 11.6 ± 4.3
Coefficient of variation 0.01 0.01 0.02 0.01 0.02 0.01 0.37
Pearson correlation
coefficient with log10MLS		 0.78 -0.78 0.84 0.03 -0.84 0.29 -
Pearson p-value
(two tailed)		 2.29E-02 2.29E-02 9.24E-03 9.41E-01 9.29E-03 4.79E-01 -
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Stats for ATP6 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 36.8 - 43.7% 56.3 - 63.2% 162 - 192 90 - 107 199 - 223 186 - 209 6.0 - 20.0
Median 40.5% 59.8% 176 103 214 194 12.0
Average ± stdev 40.8 ± 2.3% 59.2 ± 2.3% 177 ± 9 101 ± 5 211 ± 8 193 ± 6 11.6 ± 4.3
Coefficient of variation 0.06 0.04 0.06 0.05 0.04 0.03 0.37
Pearson correlation
coefficient with log10MLS		 0.82 -0.82 0.82 0.77 -0.80 -0.76 -
Pearson p-value
(two tailed)		 1.25E-02 1.25E-02 1.36E-02 2.41E-02 1.74E-02 2.81E-02 -
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Stats for ATP8 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 36.3 - 43.5% 56.5 - 63.7% 40 - 49 19 - 24 39 - 47 54 - 63 6.0 - 20.0
Median 41.1% 60.1% 46 21 44 58 12.0
Average ± stdev 40.0 ± 2.8% 60.0 ± 2.8% 45 ± 3 21 ± 1 43 ± 2 57 ± 3 11.6 ± 4.3
Coefficient of variation 0.07 0.05 0.07 0.08 0.06 0.05 0.37
Pearson correlation
coefficient with log10MLS		 0.49 -0.49 0.27 0.74 0.05 -0.76 -
Pearson p-value
(two tailed)		 2.15E-01 2.15E-01 5.21E-01 3.40E-02 8.99E-01 2.89E-02 -
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Stats for COX1 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 41.4 - 46.4% 53.6 - 58.6% 365 - 425 268 - 296 440 - 494 390 - 419 6.0 - 20.0
Median 43.6% 57.2% 398 281 475 405 12.0
Average ± stdev 43.8 ± 2.1% 56.2 ± 2.1% 396 ± 21 283 ± 8 468 ± 20 403 ± 9 11.6 ± 4.3
Coefficient of variation 0.05 0.04 0.06 0.03 0.04 0.02 0.37
Pearson correlation
coefficient with log10MLS		 0.67 -0.67 0.62 0.73 -0.67 -0.64 -
Pearson p-value
(two tailed)		 6.92E-02 6.92E-02 9.90E-02 4.09E-02 6.95E-02 8.79E-02 -
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Stats for COX2 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 40.8 - 44.9% 55.1 - 59.2% 168 - 184 109 - 126 186 - 204 195 - 209 6.0 - 20.0
Median 41.7% 58.5% 173 119 200 205 12.0
Average ± stdev 42.3 ± 1.7% 57.7 ± 1.7% 174 ± 6 118 ± 5 196 ± 6 202 ± 5 11.6 ± 4.3
Coefficient of variation 0.04 0.03 0.03 0.05 0.03 0.03 0.37
Pearson correlation
coefficient with log10MLS		 0.75 -0.75 0.76 0.65 -0.69 -0.71 -
Pearson p-value
(two tailed)		 3.10E-02 3.10E-02 3.00E-02 8.18E-02 5.69E-02 4.65E-02 -
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Stats for COX3 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 43.6 - 47.6% 52.4 - 56.4% 208 - 231 126 - 143 210 - 232 202 - 220 6.0 - 20.0
Median 46.0% 55.2% 224 137 222 211 12.0
Average ± stdev 45.4 ± 1.6% 54.6 ± 1.6% 220 ± 7 136 ± 5 218 ± 7 209 ± 5 11.6 ± 4.3
Coefficient of variation 0.04 0.03 0.03 0.04 0.03 0.03 0.37
Pearson correlation
coefficient with log10MLS		 0.63 -0.63 0.46 0.73 -0.45 -0.76 -
Pearson p-value
(two tailed)		 9.51E-02 9.51E-02 2.52E-01 3.98E-02 2.66E-01 2.88E-02 -
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Stats for CYTB (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 43.1 - 46.0% 54.0 - 56.9% 308 - 337 182 - 195 309 - 344 293 - 317 6.0 - 20.0
Median 45.6% 55.0% 330 191 318 306 12.0
Average ± stdev 45.0 ± 1.0% 55.0 ± 1.0% 324 ± 10 188 ± 4 322 ± 14 304 ± 6 11.6 ± 4.3
Coefficient of variation 0.02 0.02 0.03 0.03 0.04 0.02 0.37
Pearson correlation
coefficient with log10MLS		 0.22 -0.22 0.29 -0.11 -0.26 0.16 -
Pearson p-value
(two tailed)		 5.93E-01 5.93E-01 4.93E-01 7.90E-01 5.38E-01 6.98E-01 -
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Stats for ND1 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 42.4 - 48.1% 51.9 - 57.6% 254 - 292 158 - 178 242 - 290 258 - 279 6.0 - 20.0
Median 46.2% 56.2% 280 168 281 273 12.0
Average ± stdev 45.0 ± 2.3% 55.0 ± 2.3% 271 ± 17 166 ± 6 267 ± 19 269 ± 7 11.6 ± 4.3
Coefficient of variation 0.05 0.04 0.06 0.04 0.07 0.03 0.37
Pearson correlation
coefficient with log10MLS		 0.69 -0.69 0.67 0.53 -0.66 -0.27 -
Pearson p-value
(two tailed)		 5.62E-02 5.62E-02 7.06E-02 1.72E-01 7.75E-02 5.15E-01 -
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Stats for ND2 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 43.6 - 49.8% 50.2 - 56.4% 306 - 352 147 - 178 226 - 297 276 - 317 6.0 - 20.0
Median 46.6% 53.6% 332 164 270 298 12.0
Average ± stdev 46.7 ± 2.0% 53.3 ± 2.0% 328 ± 17 160 ± 9 261 ± 23 296 ± 16 11.6 ± 4.3
Coefficient of variation 0.04 0.04 0.05 0.06 0.09 0.06 0.37
Pearson correlation
coefficient with log10MLS		 0.53 -0.53 0.63 -0.10 -0.63 0.28 -
Pearson p-value
(two tailed)		 1.81E-01 1.81E-01 9.08E-02 8.12E-01 9.09E-02 5.06E-01 -
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Stats for ND3 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 39.6 - 47.3% 52.7 - 60.4% 89 - 103 50 - 65 103 - 116 82 - 103 6.0 - 20.0
Median 44.1% 58.1% 90 56 110 88 12.0
Average ± stdev 43.2 ± 2.7% 56.8 ± 2.7% 94 ± 6 56 ± 4 108 ± 4 90 ± 6 11.6 ± 4.3
Coefficient of variation 0.06 0.05 0.07 0.09 0.04 0.07 0.37
Pearson correlation
coefficient with log10MLS		 0.35 -0.35 0.62 -0.18 -0.31 -0.29 -
Pearson p-value
(two tailed)		 4.01E-01 4.01E-01 1.04E-01 6.71E-01 4.50E-01 4.93E-01 -
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Stats for ND4 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 41.0 - 46.6% 53.4 - 59.0% 351 - 410 209 - 240 345 - 415 384 - 416 6.0 - 20.0
Median 43.4% 57.7% 391 217 388 406 12.0
Average ± stdev 43.6 ± 2.4% 56.4 ± 2.4% 383 ± 21 219 ± 10 377 ± 26 402 ± 9 11.6 ± 4.3
Coefficient of variation 0.05 0.04 0.06 0.05 0.07 0.02 0.37
Pearson correlation
coefficient with log10MLS		 0.59 -0.59 0.57 0.50 -0.67 -0.03 -
Pearson p-value
(two tailed)		 1.25E-01 1.25E-01 1.37E-01 2.03E-01 7.00E-02 9.52E-01 -
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Stats for ND4L (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 42.8 - 49.2% 50.8 - 57.2% 79 - 91 48 - 55 80 - 92 68 - 79 6.0 - 20.0
Median 47.8% 53.5% 88 55 84 77 12.0
Average ± stdev 46.5 ± 2.4% 53.5 ± 2.4% 86 ± 3 51 ± 3 84 ± 4 74 ± 3 11.6 ± 4.3
Coefficient of variation 0.05 0.04 0.05 0.07 0.05 0.05 0.37
Pearson correlation
coefficient with log10MLS		 0.20 -0.20 0.22 0.13 -0.32 0.02 -
Pearson p-value
(two tailed)		 6.41E-01 6.41E-01 6.05E-01 7.62E-01 4.40E-01 9.54E-01 -
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Stats for ND5 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 39.7 - 44.8% 55.2 - 60.3% 477 - 548 254 - 289 480 - 561 519 - 569 6.0 - 20.0
Median 42.0% 59.0% 500 272 526 540 12.0
Average ± stdev 42.3 ± 2.0% 57.7 ± 2.0% 507 ± 28 270 ± 10 519 ± 28 541 ± 15 11.6 ± 4.3
Coefficient of variation 0.05 0.03 0.06 0.04 0.06 0.03 0.37
Pearson correlation
coefficient with log10MLS		 0.56 -0.56 0.57 0.26 -0.58 -0.16 -
Pearson p-value
(two tailed)		 1.48E-01 1.48E-01 1.43E-01 5.27E-01 1.32E-01 6.97E-01 -
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Stats for ND6 (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 43.9 - 50.0% 50.0 - 56.1% 156 - 170 71 - 94 66 - 87 189 - 207 6.0 - 20.0
Median 47.1% 53.1% 167 80 76 204 12.0
Average ± stdev 46.7 ± 2.0% 53.3 ± 2.0% 164 ± 4 79 ± 6 76 ± 7 201 ± 5 11.6 ± 4.3
Coefficient of variation 0.04 0.04 0.03 0.08 0.10 0.03 0.37
Pearson correlation
coefficient with log10MLS		 0.27 -0.27 0.14 0.29 -0.53 0.28 -
Pearson p-value
(two tailed)		 5.20E-01 5.20E-01 7.39E-01 4.85E-01 1.79E-01 5.02E-01 -
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Stats for 12S rRNA gene (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 48.3 - 49.6% 50.4 - 51.7% 240 - 249 216 - 224 189 - 199 285 - 297 6.0 - 20.0
Median 49.3% 50.8% 247 221 192 292 12.0
Average ± stdev 49.0 ± 0.5% 51.0 ± 0.5% 246 ± 2 219 ± 2 192 ± 2 292 ± 3 11.6 ± 4.3
Coefficient of variation 0.01 0.01 0.01 0.01 0.02 0.01 0.37
Pearson correlation
coefficient with log10MLS		 0.71 -0.71 0.64 0.58 -0.69 -0.29 -
Pearson p-value
(two tailed)		 4.82E-02 4.82E-02 8.54E-02 1.34E-01 5.61E-02 4.88E-01 -
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Stats for 16S rRNA gene (group size: 8 species)
GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Range (min-max) 44.3 - 46.0% 54.0 - 55.7% 383 - 412 363 - 377 327 - 354 569 - 586 6.0 - 20.0
Median 45.6% 55.0% 400 365 348 585 12.0
Average ± stdev 45.2 ± 0.7% 54.8 ± 0.7% 395 ± 11 366 ± 4 340 ± 10 581 ± 5 11.6 ± 4.3
Coefficient of variation 0.02 0.01 0.03 0.01 0.03 0.01 0.37
Pearson correlation
coefficient with log10MLS		 0.62 -0.62 0.80 -0.28 -0.81 0.55 -
Pearson p-value
(two tailed)		 9.97E-02 9.97E-02 1.65E-02 4.98E-01 1.54E-02 1.59E-01 -
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.