Viewing data for Falco tinnunculus
| Scientific name | Falco tinnunculus |
| Common name | Common kestrel |
| Maximum lifespan | 23.80 years (Falco tinnunculus@AnAge) |
| Total mtDNA (size: 17663 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 8056 | 9607 | 5706 | 2350 | 3841 | 5766 |
| Base content per 1 kb (bases) | 456 | 544 | 323 | 133 | 217 | 326 |
| Base content (%) | 45.6% | 54.4% | ||||
| Total protein-coding genes (size: 11378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5330 | 6048 | 3980 | 1350 | 2536 | 3512 |
| Base content per 1 kb (bases) | 468 | 532 | 350 | 119 | 223 | 309 |
| Base content (%) | 46.8% | 53.2% | ||||
| D-loop (size: 1266 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 576 | 690 | 392 | 184 | 347 | 343 |
| Base content per 1 kb (bases) | 455 | 545 | 310 | 145 | 274 | 271 |
| Base content (%) | 45.5% | 54.5% | ||||
| Total tRNA-coding genes (size: 1565 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 678 | 887 | 415 | 263 | 364 | 523 |
| Base content per 1 kb (bases) | 433 | 567 | 265 | 168 | 233 | 334 |
| Base content (%) | 43.3% | 56.7% | ||||
| Total rRNA-coding genes (size: 2574 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1233 | 1341 | 744 | 489 | 481 | 860 |
| Base content per 1 kb (bases) | 479 | 521 | 289 | 190 | 187 | 334 |
| Base content (%) | 47.9% | 52.1% | ||||
| 12S rRNA gene (size: 978 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 498 | 480 | 296 | 202 | 171 | 309 |
| Base content per 1 kb (bases) | 509 | 491 | 303 | 207 | 175 | 316 |
| Base content (%) | 50.9% | 49.1% | ||||
| 16S rRNA gene (size: 1596 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 735 | 861 | 448 | 287 | 310 | 551 |
| Base content per 1 kb (bases) | 461 | 539 | 281 | 180 | 194 | 345 |
| Base content (%) | 46.1% | 53.9% | ||||
| ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 317 | 367 | 253 | 64 | 163 | 204 |
| Base content per 1 kb (bases) | 463 | 537 | 370 | 94 | 238 | 298 |
| Base content (%) | 46.3% | 53.7% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 75 | 93 | 67 | 8 | 33 | 60 |
| Base content per 1 kb (bases) | 446 | 554 | 399 | 48 | 196 | 357 |
| Base content (%) | 44.6% | 55.4% | ||||
| COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 736 | 815 | 498 | 238 | 376 | 439 |
| Base content per 1 kb (bases) | 475 | 525 | 321 | 153 | 242 | 283 |
| Base content (%) | 47.5% | 52.5% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 320 | 364 | 217 | 103 | 153 | 211 |
| Base content per 1 kb (bases) | 468 | 532 | 317 | 151 | 224 | 308 |
| Base content (%) | 46.8% | 53.2% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 379 | 405 | 262 | 117 | 184 | 221 |
| Base content per 1 kb (bases) | 483 | 517 | 334 | 149 | 235 | 282 |
| Base content (%) | 48.3% | 51.7% | ||||
| CYTB (size: 1143 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 533 | 610 | 397 | 136 | 264 | 346 |
| Base content per 1 kb (bases) | 466 | 534 | 347 | 119 | 231 | 303 |
| Base content (%) | 46.6% | 53.4% | ||||
| ND1 (size: 975 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 465 | 510 | 342 | 123 | 241 | 269 |
| Base content per 1 kb (bases) | 477 | 523 | 351 | 126 | 247 | 276 |
| Base content (%) | 47.7% | 52.3% | ||||
| ND2 (size: 1040 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 460 | 580 | 368 | 92 | 234 | 346 |
| Base content per 1 kb (bases) | 442 | 558 | 354 | 88 | 225 | 333 |
| Base content (%) | 44.2% | 55.8% | ||||
| ND3 (size: 352 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 172 | 180 | 128 | 44 | 83 | 97 |
| Base content per 1 kb (bases) | 489 | 511 | 364 | 125 | 236 | 276 |
| Base content (%) | 48.9% | 51.1% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 658 | 720 | 518 | 140 | 301 | 419 |
| Base content per 1 kb (bases) | 478 | 522 | 376 | 102 | 218 | 304 |
| Base content (%) | 47.8% | 52.2% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 146 | 151 | 110 | 36 | 70 | 81 |
| Base content per 1 kb (bases) | 492 | 508 | 370 | 121 | 236 | 273 |
| Base content (%) | 49.2% | 50.8% | ||||
| ND5 (size: 1818 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 830 | 988 | 623 | 207 | 384 | 604 |
| Base content per 1 kb (bases) | 457 | 543 | 343 | 114 | 211 | 332 |
| Base content (%) | 45.7% | 54.3% | ||||
| ND6 (size: 522 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 244 | 278 | 200 | 44 | 54 | 224 |
| Base content per 1 kb (bases) | 467 | 533 | 383 | 84 | 103 | 429 |
| Base content (%) | 46.7% | 53.3% | ||||
| ATP6 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%) 
Alanine (Ala, A)
n = 15 (6.61%) 
Serine (Ser, S)
n = 13 (5.73%) 
Threonine (Thr, T)
n = 26 (11.45%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 8 (3.52%) 
Leucine (Leu, L)
n = 57 (25.11%) 
Isoleucine (Ile, I)
n = 17 (7.49%) 
Methionine (Met, M)
n = 13 (5.73%) 
Proline (Pro, P)
n = 17 (7.49%) 
Phenylalanine (Phe, F)
n = 9 (3.96%) 
Tyrosine (Tyr, Y)
n = 4 (1.76%) 
Tryptophan (Trp, W)
n = 4 (1.76%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 4 (1.76%) 
Asparagine (Asn, N)
n = 11 (4.85%) 
Glutamine (Gln, Q)
n = 9 (3.96%) 
Histidine (His, H)
n = 4 (1.76%) 
Lysine (Lys, K)
n = 3 (1.32%) 
Arginine (Arg, R)
n = 4 (1.76%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 10 | 9 | 5 | 17 | 28 | 1 | 6 | 9 | 0 | 0 | 6 | 1 | 1 | 2 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 2 | 5 | 8 | 0 | 1 | 4 | 3 | 0 | 3 | 10 | 2 | 2 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 11 | 0 | 0 | 7 | 2 | 0 | 0 | 4 | 1 | 3 | 0 | 0 | 2 | 9 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 0 | 0 | 1 | 3 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 36 | 85 | 74 | 33 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 20 | 67 | 37 | 104 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 101 | 93 | 26 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNPSPWFLTMLTTWMIFSLIIQPKLLPFTPTNHPQNKTNILNKSTPWTWPWT* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 9 (16.36%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 5 (9.09%)
Glutamine (Gln, Q)
n = 3 (5.45%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 3 | 2 | 1 | 2 | 2 | 1 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 1 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 4 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 5 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 0 | 19 | 25 | 12 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 6 | 20 | 13 | 17 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 2 | 28 | 22 | 4 | ||||||||||||
| COX1 (size: 1551 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 43 (8.33%)
Serine (Ser, S)
n = 26 (5.04%)
Threonine (Thr, T)
n = 46 (8.91%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 31 (6.01%)
Leucine (Leu, L)
n = 65 (12.6%)
Isoleucine (Ile, I)
n = 41 (7.95%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 30 (5.81%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 19 (3.68%)
Tryptophan (Trp, W)
n = 16 (3.1%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 18 (3.49%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 9 (1.74%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 30 | 22 | 5 | 15 | 31 | 3 | 9 | 8 | 1 | 2 | 10 | 18 | 1 | 10 | 32 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 8 | 22 | 12 | 1 | 5 | 16 | 25 | 1 | 4 | 12 | 13 | 1 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 24 | 17 | 0 | 2 | 11 | 9 | 1 | 0 | 3 | 2 | 17 | 0 | 2 | 1 | 14 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 15 | 9 | 1 | 2 | 13 | 9 | 0 | 1 | 1 | 7 | 0 | 0 | 1 | 0 | 0 | 16 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 146 | 120 | 139 | 112 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 77 | 142 | 95 | 203 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 15 | 236 | 205 | 61 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 16 (7.05%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 15 (6.61%)
Leucine (Leu, L)
n = 30 (13.22%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 8 (3.52%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 12 (5.29%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 9 (3.96%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 13 | 6 | 2 | 8 | 12 | 3 | 4 | 8 | 0 | 1 | 5 | 9 | 0 | 1 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 2 | 3 | 7 | 5 | 1 | 0 | 2 | 6 | 0 | 0 | 4 | 7 | 2 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 8 | 0 | 2 | 9 | 6 | 0 | 0 | 2 | 2 | 6 | 1 | 1 | 3 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 13 | 2 | 2 | 10 | 3 | 1 | 0 | 2 | 3 | 0 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 66 | 60 | 54 | 48 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 23 | 62 | 62 | 81 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 14 | 95 | 95 | 24 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 24 (9.23%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 17 (6.54%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 12 (4.62%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 19 (7.31%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 15 (5.77%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 7 (2.69%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 14 (5.38%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 13 | 8 | 3 | 9 | 17 | 1 | 3 | 9 | 0 | 0 | 6 | 4 | 2 | 3 | 20 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 2 | 3 | 17 | 4 | 0 | 1 | 5 | 12 | 1 | 1 | 8 | 6 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 8 | 1 | 1 | 3 | 7 | 0 | 0 | 5 | 3 | 6 | 1 | 0 | 1 | 6 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 8 | 0 | 2 | 1 | 4 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 66 | 73 | 62 | 60 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 67 | 54 | 97 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 122 | 105 | 26 | ||||||||||||
| CYTB (size: 1143 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 27 (7.11%)
Serine (Ser, S)
n = 24 (6.32%)
Threonine (Thr, T)
n = 27 (7.11%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 12 (3.16%)
Leucine (Leu, L)
n = 68 (17.89%)
Isoleucine (Ile, I)
n = 33 (8.68%)
Methionine (Met, M)
n = 12 (3.16%)
Proline (Pro, P)
n = 25 (6.58%)
Phenylalanine (Phe, F)
n = 23 (6.05%)
Tyrosine (Tyr, Y)
n = 16 (4.21%)
Tryptophan (Trp, W)
n = 12 (3.16%)
Aspartic acid (Asp, D)
n = 6 (1.58%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 22 (5.79%)
Glutamine (Gln, Q)
n = 9 (2.37%)
Histidine (His, H)
n = 11 (2.89%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 23 | 10 | 3 | 15 | 41 | 1 | 8 | 6 | 3 | 1 | 6 | 5 | 0 | 5 | 18 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 3 | 1 | 16 | 10 | 0 | 0 | 9 | 14 | 1 | 0 | 12 | 13 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 9 | 1 | 2 | 9 | 12 | 0 | 0 | 1 | 3 | 13 | 2 | 0 | 0 | 22 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 7 | 0 | 1 | 5 | 10 | 0 | 0 | 4 | 3 | 1 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 113 | 105 | 87 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 49 | 102 | 82 | 148 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 182 | 159 | 29 | ||||||||||||
| ND1 (size: 975 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.32%)
Alanine (Ala, A)
n = 31 (9.57%)
Serine (Ser, S)
n = 26 (8.02%)
Threonine (Thr, T)
n = 26 (8.02%)
Cysteine (Cys, C)
n = 2 (0.62%)
Valine (Val, V)
n = 13 (4.01%)
Leucine (Leu, L)
n = 63 (19.44%)
Isoleucine (Ile, I)
n = 21 (6.48%)
Methionine (Met, M)
n = 14 (4.32%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 19 (5.86%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 15 | 10 | 8 | 19 | 26 | 3 | 6 | 6 | 1 | 2 | 2 | 9 | 0 | 5 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 2 | 3 | 18 | 9 | 1 | 1 | 9 | 3 | 1 | 0 | 13 | 11 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 14 | 8 | 0 | 2 | 8 | 11 | 0 | 0 | 5 | 7 | 5 | 0 | 1 | 2 | 9 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 9 | 2 | 1 | 3 | 7 | 0 | 0 | 3 | 5 | 0 | 0 | 0 | 1 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 73 | 98 | 84 | 70 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 37 | 102 | 56 | 130 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 142 | 129 | 41 | ||||||||||||
| ND2 (size: 1040 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 27 (7.83%)
Serine (Ser, S)
n = 39 (11.3%)
Threonine (Thr, T)
n = 45 (13.04%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 61 (17.68%)
Isoleucine (Ile, I)
n = 33 (9.57%)
Methionine (Met, M)
n = 22 (6.38%)
Proline (Pro, P)
n = 22 (6.38%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 9 (2.61%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 11 (3.19%)
Histidine (His, H)
n = 5 (1.45%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 23 | 19 | 4 | 17 | 30 | 2 | 8 | 9 | 2 | 0 | 2 | 3 | 0 | 4 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 1 | 2 | 15 | 10 | 0 | 0 | 6 | 6 | 0 | 1 | 13 | 8 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 17 | 25 | 0 | 4 | 13 | 14 | 1 | 0 | 7 | 0 | 7 | 0 | 0 | 1 | 11 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 4 | 1 | 0 | 1 | 12 | 1 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 50 | 94 | 132 | 70 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 32 | 126 | 54 | 134 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 148 | 159 | 29 | ||||||||||||
| ND3 (size: 1040 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 27 (7.83%)
Serine (Ser, S)
n = 39 (11.3%)
Threonine (Thr, T)
n = 45 (13.04%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 61 (17.68%)
Isoleucine (Ile, I)
n = 33 (9.57%)
Methionine (Met, M)
n = 22 (6.38%)
Proline (Pro, P)
n = 22 (6.38%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 9 (2.61%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 11 (3.19%)
Histidine (His, H)
n = 5 (1.45%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 23 | 19 | 4 | 17 | 30 | 2 | 8 | 9 | 2 | 0 | 2 | 3 | 0 | 4 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 1 | 2 | 15 | 10 | 0 | 0 | 6 | 6 | 0 | 1 | 13 | 8 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 17 | 25 | 0 | 4 | 13 | 14 | 1 | 0 | 7 | 0 | 7 | 0 | 0 | 1 | 11 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 4 | 1 | 0 | 1 | 12 | 1 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 50 | 94 | 132 | 70 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 32 | 126 | 54 | 134 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 148 | 159 | 29 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 32 (6.99%)
Serine (Ser, S)
n = 33 (7.21%)
Threonine (Thr, T)
n = 53 (11.57%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 4 (0.87%)
Leucine (Leu, L)
n = 109 (23.8%)
Isoleucine (Ile, I)
n = 36 (7.86%)
Methionine (Met, M)
n = 28 (6.11%)
Proline (Pro, P)
n = 31 (6.77%)
Phenylalanine (Phe, F)
n = 11 (2.4%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 7 (1.53%)
Asparagine (Asn, N)
n = 13 (2.84%)
Glutamine (Gln, Q)
n = 12 (2.62%)
Histidine (His, H)
n = 17 (3.71%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 13 (2.84%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 26 | 23 | 5 | 41 | 46 | 4 | 11 | 11 | 1 | 0 | 0 | 4 | 0 | 3 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 2 | 1 | 0 | 14 | 17 | 1 | 0 | 9 | 6 | 3 | 2 | 15 | 14 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 34 | 14 | 0 | 1 | 12 | 10 | 0 | 0 | 10 | 3 | 10 | 1 | 2 | 0 | 13 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 6 | 1 | 2 | 2 | 9 | 1 | 0 | 2 | 11 | 0 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 65 | 169 | 150 | 75 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 56 | 139 | 76 | 188 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 19 | 210 | 193 | 37 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 13 (13.27%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 7 (7.14%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 2 (2.04%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 3 | 5 | 2 | 6 | 11 | 0 | 5 | 2 | 0 | 0 | 0 | 1 | 0 | 1 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 3 | 1 | 8 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 2 | 1 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 4 | 0 | 0 | 3 | 5 | 1 | 0 | 4 | 1 | 2 | 0 | 0 | 0 | 3 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 18 | 31 | 26 | 24 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 14 | 29 | 18 | 38 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 50 | 37 | 8 | ||||||||||||
| ND5 (size: 1818 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.29%)
Alanine (Ala, A)
n = 49 (8.1%)
Serine (Ser, S)
n = 45 (7.44%)
Threonine (Thr, T)
n = 81 (13.39%)
Cysteine (Cys, C)
n = 7 (1.16%)
Valine (Val, V)
n = 12 (1.98%)
Leucine (Leu, L)
n = 99 (16.36%)
Isoleucine (Ile, I)
n = 54 (8.93%)
Methionine (Met, M)
n = 33 (5.45%)
Proline (Pro, P)
n = 27 (4.46%)
Phenylalanine (Phe, F)
n = 29 (4.79%)
Tyrosine (Tyr, Y)
n = 14 (2.31%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 7 (1.16%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 27 (4.46%)
Glutamine (Gln, Q)
n = 17 (2.81%)
Histidine (His, H)
n = 16 (2.64%)
Lysine (Lys, K)
n = 24 (3.97%)
Arginine (Arg, R)
n = 8 (1.32%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 42 | 30 | 4 | 22 | 51 | 11 | 11 | 15 | 2 | 1 | 3 | 7 | 1 | 5 | 24 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 6 | 5 | 26 | 18 | 0 | 3 | 12 | 14 | 3 | 5 | 13 | 9 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 39 | 36 | 1 | 2 | 18 | 13 | 1 | 0 | 11 | 1 | 13 | 1 | 0 | 2 | 25 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 11 | 1 | 1 | 6 | 24 | 0 | 0 | 3 | 5 | 0 | 1 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 112 | 156 | 231 | 107 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 71 | 191 | 117 | 227 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 24 | 276 | 256 | 50 | ||||||||||||
| ND6 (size: 522 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 30 (17.34%)
Alanine (Ala, A)
n = 13 (7.51%)
Serine (Ser, S)
n = 10 (5.78%)
Threonine (Thr, T)
n = 3 (1.73%)
Cysteine (Cys, C)
n = 4 (2.31%)
Valine (Val, V)
n = 32 (18.5%)
Leucine (Leu, L)
n = 24 (13.87%)
Isoleucine (Ile, I)
n = 5 (2.89%)
Methionine (Met, M)
n = 6 (3.47%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 16 (9.25%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 4 (2.31%)
Aspartic acid (Asp, D)
n = 4 (2.31%)
Glutamic acid (Glu, E)
n = 2 (1.16%)
Asparagine (Asn, N)
n = 3 (1.73%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 5 (2.89%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 0 | 1 | 2 | 0 | 0 | 2 | 3 | 0 | 0 | 18 | 0 | 0 | 14 | 15 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 4 | 0 | 3 | 0 | 5 | 5 | 5 | 0 | 3 | 22 | 1 | 1 | 2 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 0 | 7 | 0 | 0 | 1 | 2 | 0 | 7 | 1 | 3 | 17 | 3 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 0 | 2 | 4 | 0 | 0 | 0 | 1 | 0 | 2 | 2 | 0 | 0 | 0 | 1 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 81 | 13 | 19 | 61 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 45 | 28 | 18 | 83 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 74 | 3 | 17 | 80 | ||||||||||||
| Total protein-coding genes (size: 11395 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 220 (5.8%)
Alanine (Ala, A)
n = 294 (7.74%)
Serine (Ser, S)
n = 276 (7.27%)
Threonine (Thr, T)
n = 366 (9.64%)
Cysteine (Cys, C)
n = 32 (0.84%)
Valine (Val, V)
n = 146 (3.85%)
Leucine (Leu, L)
n = 671 (17.68%)
Isoleucine (Ile, I)
n = 294 (7.74%)
Methionine (Met, M)
n = 185 (4.87%)
Proline (Pro, P)
n = 227 (5.98%)
Phenylalanine (Phe, F)
n = 207 (5.45%)
Tyrosine (Tyr, Y)
n = 115 (3.03%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 61 (1.61%)
Glutamic acid (Glu, E)
n = 89 (2.34%)
Asparagine (Asn, N)
n = 136 (3.58%)
Glutamine (Gln, Q)
n = 101 (2.66%)
Histidine (His, H)
n = 103 (2.71%)
Lysine (Lys, K)
n = 88 (2.32%)
Arginine (Arg, R)
n = 72 (1.9%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 85 | 209 | 149 | 45 | 178 | 313 | 36 | 76 | 91 | 10 | 25 | 40 | 62 | 19 | 56 | 151 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 36 | 10 | 22 | 32 | 151 | 102 | 9 | 16 | 77 | 93 | 34 | 18 | 111 | 93 | 5 | 33 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 189 | 141 | 3 | 23 | 98 | 93 | 6 | 2 | 54 | 30 | 85 | 9 | 23 | 15 | 121 | 12 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 91 | 75 | 14 | 15 | 46 | 85 | 3 | 2 | 21 | 46 | 3 | 1 | 1 | 7 | 1 | 95 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 810 | 1075 | 1127 | 785 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 486 | 1107 | 701 | 1503 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 212 | 1644 | 1522 | 419 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​F​a​l​c​o​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ t​i​n​n​u​n​c​u​l​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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