Viewing data for Oreochromis niloticus


Scientific name Oreochromis niloticus
Common name Nile tilapia
Maximum lifespan 9.00 years (Oreochromis niloticus@AnAge)

Total mtDNA (size: 16627 bases) GC AT G C A T
Base content (bases) 7618 9009 5033 2585 4354 4655
Base content per 1 kb (bases) 458 542 303 155 262 280
Base content (%) 45.8% 54.2%
Total protein-coding genes (size: 11451 bases) GC AT G C A T
Base content (bases) 5304 6147 3706 1598 3138 3009
Base content per 1 kb (bases) 463 537 324 140 274 263
Base content (%) 46.3% 53.7%
D-loop (size: 924 bases) GC AT G C A T
Base content (bases) 332 592 199 133 300 292
Base content per 1 kb (bases) 359 641 215 144 325 316
Base content (%) 35.9% 64.1%
Total tRNA-coding genes (size: 1553 bases) GC AT G C A T
Base content (bases) 695 858 387 308 377 481
Base content per 1 kb (bases) 448 552 249 198 243 310
Base content (%) 44.8% 55.2%
Total rRNA-coding genes (size: 2643 bases) GC AT G C A T
Base content (bases) 1257 1386 721 536 528 858
Base content per 1 kb (bases) 476 524 273 203 200 325
Base content (%) 47.6% 52.4%
12S rRNA gene (size: 944 bases) GC AT G C A T
Base content (bases) 468 476 260 208 189 287
Base content per 1 kb (bases) 496 504 275 220 200 304
Base content (%) 49.6% 50.4%
16S rRNA gene (size: 1699 bases) GC AT G C A T
Base content (bases) 789 910 461 328 339 571
Base content per 1 kb (bases) 464 536 271 193 200 336
Base content (%) 46.4% 53.6%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 306 378 219 87 208 170
Base content per 1 kb (bases) 447 553 320 127 304 249
Base content (%) 44.7% 55.3%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 79 89 60 19 37 52
Base content per 1 kb (bases) 470 530 357 113 220 310
Base content (%) 47.0% 53.0%
COX1 (size: 1596 bases) GC AT G C A T
Base content (bases) 728 868 446 282 463 405
Base content per 1 kb (bases) 456 544 279 177 290 254
Base content (%) 45.6% 54.4%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 313 378 200 113 181 197
Base content per 1 kb (bases) 453 547 289 164 262 285
Base content (%) 45.3% 54.7%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 367 417 241 126 218 199
Base content per 1 kb (bases) 468 532 307 161 278 254
Base content (%) 46.8% 53.2%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 524 617 370 154 340 277
Base content per 1 kb (bases) 459 541 324 135 298 243
Base content (%) 45.9% 54.1%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 454 521 324 130 276 245
Base content per 1 kb (bases) 466 534 332 133 283 251
Base content (%) 46.6% 53.4%
ND2 (size: 1046 bases) GC AT G C A T
Base content (bases) 498 548 378 120 275 273
Base content per 1 kb (bases) 476 524 361 115 263 261
Base content (%) 47.6% 52.4%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 168 181 118 50 108 73
Base content per 1 kb (bases) 481 519 338 143 309 209
Base content (%) 48.1% 51.9%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 628 753 446 182 380 373
Base content per 1 kb (bases) 455 545 323 132 275 270
Base content (%) 45.5% 54.5%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 154 143 109 45 85 58
Base content per 1 kb (bases) 519 481 367 152 286 195
Base content (%) 51.9% 48.1%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 831 1008 597 234 506 502
Base content per 1 kb (bases) 452 548 325 127 275 273
Base content (%) 45.2% 54.8%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 259 263 201 58 67 196
Base content per 1 kb (bases) 496 504 385 111 128 375
Base content (%) 49.6% 50.4%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%)
Alanine (Ala, A)
n = 19 (8.37%)
Serine (Ser, S)
n = 8 (3.52%)
Threonine (Thr, T)
n = 23 (10.13%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (4.85%)
Leucine (Leu, L)
n = 54 (23.79%)
Isoleucine (Ile, I)
n = 20 (8.81%)
Methionine (Met, M)
n = 8 (3.52%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 13 (5.73%)
Tyrosine (Tyr, Y)
n = 5 (2.2%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 10 (4.41%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 2 (0.88%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 6 6 18 13 11 4 7 8 2 4 3 4 0 8 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 4 9 4 2 2 4 3 1 5 9 2 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 11 0 1 1 0 0 0 6 2 3 0 1 2 6 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 0 0 1 0 2 2 1 2 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 82 67 34
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 60 35 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 77 68 68
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWLIFLTVIPPKVLAHTFPNDPTLQSTEKPKTEPWTWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 2 (3.64%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 2 (3.64%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 1 0 1 1 3 1 0 2 0 1 2 0 0 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 1 1 0 0 0 0 1 5 4 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 0 1 0 0 0 0 1 0 0 0 0 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 1 0 1 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
9 20 16 11
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 20 13 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 20 23 9
COX1 (size: 1596 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.04%)
Alanine (Ala, A)
n = 49 (9.23%)
Serine (Ser, S)
n = 31 (5.84%)
Threonine (Thr, T)
n = 36 (6.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 42 (7.91%)
Leucine (Leu, L)
n = 60 (11.3%)
Isoleucine (Ile, I)
n = 40 (7.53%)
Methionine (Met, M)
n = 26 (4.9%)
Proline (Pro, P)
n = 30 (5.65%)
Phenylalanine (Phe, F)
n = 42 (7.91%)
Tyrosine (Tyr, Y)
n = 19 (3.58%)
Tryptophan (Trp, W)
n = 18 (3.39%)
Aspartic acid (Asp, D)
n = 16 (3.01%)
Glutamic acid (Glu, E)
n = 11 (2.07%)
Asparagine (Asn, N)
n = 14 (2.64%)
Glutamine (Gln, Q)
n = 9 (1.69%)
Histidine (His, H)
n = 20 (3.77%)
Lysine (Lys, K)
n = 10 (1.88%)
Arginine (Arg, R)
n = 9 (1.69%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 13 13 11 19 18 2 9 7 2 15 9 14 4 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
13 0 1 7 25 16 1 7 11 23 7 10 14 5 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 16 1 7 10 10 0 1 3 9 10 1 1 6 8 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 10 1 1 15 10 0 1 0 6 2 0 0 1 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
166 118 130 118
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
80 142 100 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 186 175 135
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 16 (6.99%)
Leucine (Leu, L)
n = 29 (12.66%)
Isoleucine (Ile, I)
n = 22 (9.61%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 10 (4.37%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 7 (3.06%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 7 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 12 7 7 8 10 1 2 6 1 3 4 6 3 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 4 7 6 0 1 3 4 1 3 4 6 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 6 0 3 6 3 0 0 4 3 5 0 1 1 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 13 2 4 9 2 2 1 3 3 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 64 56 40
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 53 62 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 83 79 52
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 6 5 7 8 11 2 4 8 0 7 4 5 0 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 3 12 7 0 2 10 9 0 4 7 2 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 9 0 4 2 3 1 0 3 2 10 0 0 1 1 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 9 1 1 4 2 0 0 0 4 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 71 53 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 67 56 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 103 90 59
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 32 (8.44%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 20 (5.28%)
Leucine (Leu, L)
n = 59 (15.57%)
Isoleucine (Ile, I)
n = 36 (9.5%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 32 (8.44%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 12 7 10 21 14 3 11 6 0 7 9 4 0 6 26
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 3 0 4 18 10 0 2 15 8 1 6 12 3 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 6 0 8 8 6 0 0 0 3 11 2 0 4 15 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 1 2 9 9 0 0 3 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
95 96 94 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 96 78 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 178 105 88
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 30 (9.26%)
Serine (Ser, S)
n = 23 (7.1%)
Threonine (Thr, T)
n = 25 (7.72%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 19 (5.86%)
Leucine (Leu, L)
n = 67 (20.68%)
Isoleucine (Ile, I)
n = 22 (6.79%)
Methionine (Met, M)
n = 10 (3.09%)
Proline (Pro, P)
n = 22 (6.79%)
Phenylalanine (Phe, F)
n = 19 (5.86%)
Tyrosine (Tyr, Y)
n = 10 (3.09%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 7 8 17 24 17 3 6 5 2 5 10 4 0 12 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 6 13 11 0 4 8 6 0 3 10 9 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 13 0 2 14 3 0 1 3 3 7 0 0 3 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 9 2 0 4 7 0 1 1 6 0 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 101 79 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 96 54 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 127 112 76
ND2 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.48%)
Alanine (Ala, A)
n = 39 (11.24%)
Serine (Ser, S)
n = 24 (6.92%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 4 (1.15%)
Leucine (Leu, L)
n = 78 (22.48%)
Isoleucine (Ile, I)
n = 27 (7.78%)
Methionine (Met, M)
n = 9 (2.59%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 10 (2.88%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 15 (4.32%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 13 7 21 27 17 1 9 14 1 2 1 1 0 7 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 11 17 11 0 4 9 4 2 7 13 3 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 15 1 0 9 11 0 0 4 3 5 1 3 4 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 0 0 1 8 1 1 2 0 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 115 103 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 127 54 128
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 136 115 84
ND3 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.48%)
Alanine (Ala, A)
n = 39 (11.24%)
Serine (Ser, S)
n = 24 (6.92%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 4 (1.15%)
Leucine (Leu, L)
n = 78 (22.48%)
Isoleucine (Ile, I)
n = 27 (7.78%)
Methionine (Met, M)
n = 9 (2.59%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 10 (2.88%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 15 (4.32%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 13 7 21 27 17 1 9 14 1 2 1 1 0 7 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 11 17 11 0 4 9 4 2 7 13 3 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 15 1 0 9 11 0 0 4 3 5 1 3 4 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 0 0 1 8 1 1 2 0 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 115 103 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 127 54 128
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 136 115 84
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (5.45%)
Alanine (Ala, A)
n = 38 (8.28%)
Serine (Ser, S)
n = 38 (8.28%)
Threonine (Thr, T)
n = 44 (9.59%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 91 (19.83%)
Isoleucine (Ile, I)
n = 40 (8.71%)
Methionine (Met, M)
n = 26 (5.66%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 8 (1.74%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
31 9 19 17 33 28 2 11 10 1 4 0 6 1 6 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 4 5 15 17 1 7 8 6 4 6 15 5 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 14 2 6 17 5 0 2 8 4 10 3 0 3 5 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 12 0 1 3 8 2 0 3 8 0 0 0 0 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
90 141 138 91
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
68 137 71 184
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 168 164 104
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 25 (25.51%)
Isoleucine (Ile, I)
n = 1 (1.02%)
Methionine (Met, M)
n = 4 (4.08%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 3 6 9 7 2 0 3 0 0 2 0 0 5 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 4 6 2 1 1 3 1 0 0 2 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 2 0 0 5 4 0 2 1 0 0 1 1 1 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 1 0 1 0 0 0 0 3 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
23 36 18 22
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
15 32 13 39
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 41 27 24
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.9%)
Alanine (Ala, A)
n = 54 (8.82%)
Serine (Ser, S)
n = 45 (7.35%)
Threonine (Thr, T)
n = 58 (9.48%)
Cysteine (Cys, C)
n = 7 (1.14%)
Valine (Val, V)
n = 27 (4.41%)
Leucine (Leu, L)
n = 95 (15.52%)
Isoleucine (Ile, I)
n = 51 (8.33%)
Methionine (Met, M)
n = 27 (4.41%)
Proline (Pro, P)
n = 31 (5.07%)
Phenylalanine (Phe, F)
n = 43 (7.03%)
Tyrosine (Tyr, Y)
n = 12 (1.96%)
Tryptophan (Trp, W)
n = 15 (2.45%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 30 (4.9%)
Glutamine (Gln, Q)
n = 17 (2.78%)
Histidine (His, H)
n = 16 (2.61%)
Lysine (Lys, K)
n = 21 (3.43%)
Arginine (Arg, R)
n = 9 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 31 21 20 36 25 2 11 15 2 8 10 9 0 16 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 5 9 28 15 2 5 12 12 1 6 15 8 2 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
30 14 0 11 13 9 0 3 9 3 9 5 1 9 21 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 10 2 6 6 18 3 2 3 4 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
135 156 199 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
73 176 121 243
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 265 182 140
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.18%)
Alanine (Ala, A)
n = 24 (13.87%)
Serine (Ser, S)
n = 10 (5.78%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 24 (13.87%)
Leucine (Leu, L)
n = 26 (15.03%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 10 (5.78%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 12 (6.94%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 6 (3.47%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 5 (2.89%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 4 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 2 3 0 0 0 6 0 0 8 1 5 10 10 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 2 0 10 0 4 10 6 2 4 16 3 0 1 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 2 4 1 0 3 2 0 8 0 1 17 1 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 5 2 0 0 1 0 0 2 2 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 13 18 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 39 19 74
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
76 6 30 62
Total protein-coding genes (size: 11473 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 245 (6.41%)
Alanine (Ala, A)
n = 346 (9.06%)
Serine (Ser, S)
n = 252 (6.6%)
Threonine (Thr, T)
n = 309 (8.09%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 200 (5.23%)
Leucine (Leu, L)
n = 648 (16.96%)
Isoleucine (Ile, I)
n = 288 (7.54%)
Methionine (Met, M)
n = 154 (4.03%)
Proline (Pro, P)
n = 222 (5.81%)
Phenylalanine (Phe, F)
n = 240 (6.28%)
Tyrosine (Tyr, Y)
n = 112 (2.93%)
Tryptophan (Trp, W)
n = 122 (3.19%)
Aspartic acid (Asp, D)
n = 75 (1.96%)
Glutamic acid (Glu, E)
n = 101 (2.64%)
Asparagine (Asn, N)
n = 112 (2.93%)
Glutamine (Gln, Q)
n = 98 (2.56%)
Histidine (His, H)
n = 110 (2.88%)
Lysine (Lys, K)
n = 79 (2.07%)
Arginine (Arg, R)
n = 76 (1.99%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
175 113 101 142 210 167 25 79 87 11 65 58 59 18 109 131
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
53 8 18 67 155 106 18 41 88 81 35 54 113 49 6 66
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
125 111 7 49 92 54 4 11 42 41 71 16 25 36 76 34
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
76 85 16 20 55 67 12 9 17 43 7 0 0 6 1 106
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
967 1050 995 810
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
522 1076 694 1530
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
254 1440 1201 927 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​O​r​e​o​c​h​r​o​m​i​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ n​i​l​o​t​i​c​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.