Viewing data for Katsuwonus pelamis


Scientific name Katsuwonus pelamis
Common name Skipjack tuna
Maximum lifespan 12.00 years (Katsuwonus pelamis@AnAge)

Total mtDNA (size: 16515 bases) GC AT G C A T
Base content (bases) 7744 8771 5002 2742 4055 4716
Base content per 1 kb (bases) 469 531 303 166 246 286
Base content (%) 46.9% 53.1%
Total protein-coding genes (size: 11411 bases) GC AT G C A T
Base content (bases) 5443 5968 3714 1729 2861 3107
Base content per 1 kb (bases) 477 523 325 152 251 272
Base content (%) 47.7% 52.3%
D-loop (size: 853 bases) GC AT G C A T
Base content (bases) 322 531 190 132 247 284
Base content per 1 kb (bases) 377 623 223 155 290 333
Base content (%) 37.7% 62.3%
Total tRNA-coding genes (size: 1551 bases) GC AT G C A T
Base content (bases) 708 843 392 316 380 463
Base content per 1 kb (bases) 456 544 253 204 245 299
Base content (%) 45.6% 54.4%
Total rRNA-coding genes (size: 2641 bases) GC AT G C A T
Base content (bases) 1244 1397 687 557 555 842
Base content per 1 kb (bases) 471 529 260 211 210 319
Base content (%) 47.1% 52.9%
12S rRNA gene (size: 949 bases) GC AT G C A T
Base content (bases) 469 480 256 213 201 279
Base content per 1 kb (bases) 494 506 270 224 212 294
Base content (%) 49.4% 50.6%
16S rRNA gene (size: 1692 bases) GC AT G C A T
Base content (bases) 775 917 431 344 354 563
Base content per 1 kb (bases) 458 542 255 203 209 333
Base content (%) 45.8% 54.2%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 312 372 224 88 183 189
Base content per 1 kb (bases) 456 544 327 129 268 276
Base content (%) 45.6% 54.4%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 76 92 55 21 41 51
Base content per 1 kb (bases) 452 548 327 125 244 304
Base content (%) 45.2% 54.8%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 716 835 430 286 443 392
Base content per 1 kb (bases) 462 538 277 184 286 253
Base content (%) 46.2% 53.8%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 315 376 204 111 177 199
Base content per 1 kb (bases) 456 544 295 161 256 288
Base content (%) 45.6% 54.4%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 377 409 246 131 201 208
Base content per 1 kb (bases) 480 520 313 167 256 265
Base content (%) 48.0% 52.0%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 542 599 371 171 311 288
Base content per 1 kb (bases) 475 525 325 150 273 252
Base content (%) 47.5% 52.5%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 475 500 328 147 246 254
Base content per 1 kb (bases) 487 513 336 151 252 261
Base content (%) 48.7% 51.3%
ND2 (size: 1047 bases) GC AT G C A T
Base content (bases) 520 527 378 142 233 294
Base content per 1 kb (bases) 497 503 361 136 223 281
Base content (%) 49.7% 50.3%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 179 172 124 55 94 78
Base content per 1 kb (bases) 510 490 353 157 268 222
Base content (%) 51.0% 49.0%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 667 714 461 206 332 382
Base content per 1 kb (bases) 483 517 334 149 240 277
Base content (%) 48.3% 51.7%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 151 146 106 45 81 65
Base content per 1 kb (bases) 508 492 357 152 273 219
Base content (%) 50.8% 49.2%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 880 959 631 249 432 527
Base content per 1 kb (bases) 479 521 343 135 235 287
Base content (%) 47.9% 52.1%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 239 283 160 79 92 191
Base content per 1 kb (bases) 458 542 307 151 176 366
Base content (%) 45.8% 54.2%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%)
Alanine (Ala, A)
n = 18 (7.93%)
Serine (Ser, S)
n = 7 (3.08%)
Threonine (Thr, T)
n = 24 (10.57%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 55 (24.23%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 14 (6.17%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 6 (2.64%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 9 1 10 9 29 2 5 5 2 5 4 5 0 4 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 0 3 8 7 0 1 7 2 0 7 5 5 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 16 0 2 0 1 0 0 4 0 3 0 0 1 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 6 0 0 1 1 0 0 1 4 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
49 84 64 31
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 62 32 109
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 78 93 43
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWLAILVFSWLVFLIVIPPKVMAHSFPNEPTPQSTEKPKGEPWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 2 (3.64%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (7.27%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 11 (20.0%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 1 1 1 2 0 1 2 0 3 1 0 0 0 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 2 1 0 0 0 0 1 3 4 4 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 0 2 0 0 0 0 1 0 0 1 0 2 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 0 0 3 0 0 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
11 19 14 12
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 18 14 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 18 23 12
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 51 (9.88%)
Serine (Ser, S)
n = 27 (5.23%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 43 (8.33%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 41 (7.95%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 27 (5.23%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 20 4 21 4 28 6 1 5 2 11 9 21 2 9 33
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
20 0 1 14 21 14 2 13 9 20 4 12 3 10 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 19 2 7 7 8 0 0 5 2 16 0 1 5 9 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 10 1 0 15 8 0 1 1 5 1 0 0 1 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
166 120 128 103
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 136 93 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
43 174 171 129
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 8 (3.49%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 16 (6.99%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 24 (10.48%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 14 (6.11%)
Glutamic acid (Glu, E)
n = 14 (6.11%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 15 6 9 4 12 3 0 7 1 3 7 4 2 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 4 6 7 1 1 2 4 2 8 2 4 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 5 1 3 7 4 0 0 3 1 8 0 0 0 5 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 13 1 2 12 4 0 0 0 6 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 66 54 39
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 54 64 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 84 81 50
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.43%)
Alanine (Ala, A)
n = 22 (8.43%)
Serine (Ser, S)
n = 14 (5.36%)
Threonine (Thr, T)
n = 23 (8.81%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 18 (6.9%)
Leucine (Leu, L)
n = 31 (11.88%)
Isoleucine (Ile, I)
n = 12 (4.6%)
Methionine (Met, M)
n = 9 (3.45%)
Proline (Pro, P)
n = 12 (4.6%)
Phenylalanine (Phe, F)
n = 23 (8.81%)
Tyrosine (Tyr, Y)
n = 13 (4.98%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 6 (2.3%)
Glutamic acid (Glu, E)
n = 9 (3.45%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 7 (2.68%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 6 (2.3%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 6 5 3 9 15 1 2 7 0 4 7 7 0 1 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 6 8 8 0 6 6 9 1 5 4 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 14 2 6 3 2 0 0 3 1 12 0 1 0 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 9 0 1 5 2 0 0 1 5 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 69 51 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 68 56 93
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 109 101 43
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 33 (8.71%)
Serine (Ser, S)
n = 26 (6.86%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 25 (6.6%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 29 (7.65%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 33 (8.71%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 15 2 16 19 20 0 3 6 0 3 9 12 1 3 30
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 3 7 8 14 4 6 6 12 2 3 8 11 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 5 2 2 14 8 1 0 1 2 11 1 0 3 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 6 1 0 10 9 0 1 0 7 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 102 87 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 101 74 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 168 127 66
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 38 (11.73%)
Serine (Ser, S)
n = 18 (5.56%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 17 (5.25%)
Leucine (Leu, L)
n = 62 (19.14%)
Isoleucine (Ile, I)
n = 27 (8.33%)
Methionine (Met, M)
n = 10 (3.09%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 16 5 8 19 25 5 4 5 2 2 8 5 2 5 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 6 16 14 2 3 7 6 2 4 12 7 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 9 0 3 5 8 0 0 2 4 7 1 1 2 10 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 0 4 7 0 1 0 5 2 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
88 100 78 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 98 57 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 130 119 53
ND2 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 43 (12.36%)
Serine (Ser, S)
n = 19 (5.46%)
Threonine (Thr, T)
n = 43 (12.36%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (3.74%)
Leucine (Leu, L)
n = 75 (21.55%)
Isoleucine (Ile, I)
n = 20 (5.75%)
Methionine (Met, M)
n = 12 (3.45%)
Proline (Pro, P)
n = 22 (6.32%)
Phenylalanine (Phe, F)
n = 13 (3.74%)
Tyrosine (Tyr, Y)
n = 7 (2.01%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 12 (3.45%)
Glutamine (Gln, Q)
n = 13 (3.74%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 13 6 9 24 26 8 8 11 2 1 4 8 0 3 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 6 22 14 1 2 6 7 3 2 6 12 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 13 0 0 9 6 0 1 3 1 6 1 0 4 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 0 1 1 8 1 0 1 3 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 113 100 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 123 56 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 142 138 45
ND3 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 43 (12.36%)
Serine (Ser, S)
n = 19 (5.46%)
Threonine (Thr, T)
n = 43 (12.36%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (3.74%)
Leucine (Leu, L)
n = 75 (21.55%)
Isoleucine (Ile, I)
n = 20 (5.75%)
Methionine (Met, M)
n = 12 (3.45%)
Proline (Pro, P)
n = 22 (6.32%)
Phenylalanine (Phe, F)
n = 13 (3.74%)
Tyrosine (Tyr, Y)
n = 7 (2.01%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 12 (3.45%)
Glutamine (Gln, Q)
n = 13 (3.74%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 13 6 9 24 26 8 8 11 2 1 4 8 0 3 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 6 22 14 1 2 6 7 3 2 6 12 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 13 0 0 9 6 0 1 3 1 6 1 0 4 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 0 1 1 8 1 0 1 3 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 113 100 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 123 56 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 142 138 45
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.88%)
Alanine (Ala, A)
n = 39 (8.5%)
Serine (Ser, S)
n = 29 (6.32%)
Threonine (Thr, T)
n = 44 (9.59%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 14 (3.05%)
Leucine (Leu, L)
n = 100 (21.79%)
Isoleucine (Ile, I)
n = 34 (7.41%)
Methionine (Met, M)
n = 25 (5.45%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 13 (2.83%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 13 (2.83%)
Asparagine (Asn, N)
n = 11 (2.4%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 8 (1.74%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 20 14 9 32 33 13 12 9 2 1 7 6 0 4 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 0 4 4 18 15 2 2 14 9 2 6 14 6 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 22 3 4 5 10 0 0 10 2 11 1 1 1 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 10 3 1 3 8 0 2 2 7 0 0 0 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
97 148 132 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
70 129 72 189
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 184 178 59
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 1 3 8 9 1 1 3 0 1 0 1 0 1 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 6 3 4 0 1 1 2 0 0 2 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 1 0 2 3 4 0 1 2 0 0 1 1 0 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 1 1 0 2 0 0 0 0 3 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
23 33 20 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 32 14 39
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 41 31 19
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (4.74%)
Alanine (Ala, A)
n = 59 (9.64%)
Serine (Ser, S)
n = 44 (7.19%)
Threonine (Thr, T)
n = 58 (9.48%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 28 (4.58%)
Leucine (Leu, L)
n = 96 (15.69%)
Isoleucine (Ile, I)
n = 49 (8.01%)
Methionine (Met, M)
n = 29 (4.74%)
Proline (Pro, P)
n = 31 (5.07%)
Phenylalanine (Phe, F)
n = 40 (6.54%)
Tyrosine (Tyr, Y)
n = 10 (1.63%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 30 (4.9%)
Glutamine (Gln, Q)
n = 19 (3.1%)
Histidine (His, H)
n = 16 (2.61%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 10 (1.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 34 16 13 27 47 6 3 14 5 6 10 10 2 8 32
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
13 1 5 7 34 17 1 2 13 12 2 10 15 4 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
31 21 1 8 8 14 1 1 12 1 9 0 0 5 25 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 9 3 1 11 20 0 1 2 6 1 0 0 1 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
140 169 199 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
72 179 120 242
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 283 208 85
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.87%)
Alanine (Ala, A)
n = 16 (9.25%)
Serine (Ser, S)
n = 11 (6.36%)
Threonine (Thr, T)
n = 6 (3.47%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 27 (15.61%)
Leucine (Leu, L)
n = 30 (17.34%)
Isoleucine (Ile, I)
n = 4 (2.31%)
Methionine (Met, M)
n = 9 (5.2%)
Proline (Pro, P)
n = 6 (3.47%)
Phenylalanine (Phe, F)
n = 8 (4.62%)
Tyrosine (Tyr, Y)
n = 9 (5.2%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 2 4 1 2 4 13 0 0 11 3 5 8 6 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 2 1 5 4 4 3 5 4 7 8 3 1 1 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 2 6 0 2 0 2 1 6 3 2 6 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 2 3 0 0 0 0 0 3 1 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 22 23 53
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 36 21 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
45 21 48 60
Total protein-coding genes (size: 11433 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 240 (6.3%)
Alanine (Ala, A)
n = 363 (9.53%)
Serine (Ser, S)
n = 236 (6.2%)
Threonine (Thr, T)
n = 300 (7.88%)
Cysteine (Cys, C)
n = 25 (0.66%)
Valine (Val, V)
n = 225 (5.91%)
Leucine (Leu, L)
n = 651 (17.09%)
Isoleucine (Ile, I)
n = 269 (7.06%)
Methionine (Met, M)
n = 156 (4.1%)
Proline (Pro, P)
n = 224 (5.88%)
Phenylalanine (Phe, F)
n = 234 (6.14%)
Tyrosine (Tyr, Y)
n = 108 (2.84%)
Tryptophan (Trp, W)
n = 119 (3.12%)
Aspartic acid (Asp, D)
n = 77 (2.02%)
Glutamic acid (Glu, E)
n = 105 (2.76%)
Asparagine (Asn, N)
n = 119 (3.12%)
Glutamine (Gln, Q)
n = 93 (2.44%)
Histidine (His, H)
n = 107 (2.81%)
Lysine (Lys, K)
n = 72 (1.89%)
Arginine (Arg, R)
n = 77 (2.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
115 154 63 108 167 255 53 57 77 16 51 72 85 17 53 181
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
93 4 21 71 154 122 16 42 78 93 27 63 83 69 9 42
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
114 131 13 46 65 70 2 5 48 20 88 8 11 24 95 20
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
87 92 13 10 67 71 1 6 9 55 7 0 0 8 2 111
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1010 1084 969 747
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
514 1070 691 1535
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
288 1483 1359 680 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​K​a​t​s​u​w​o​n​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​e​l​a​m​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.