Viewing data for Cacajao calvus
| Scientific name | Cacajao calvus |
| Common name | Red uakari |
| Maximum lifespan | 35.80 years (Cacajao calvus@AnAge) |
| Total mtDNA (size: 16702 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6468 | 10234 | 4305 | 2163 | 4779 | 5455 |
| Base content per 1 kb (bases) | 387 | 613 | 258 | 130 | 286 | 327 |
| Base content (%) | 38.7% | 61.3% | ||||
| Total protein-coding genes (size: 11346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4401 | 6945 | 3070 | 1331 | 3330 | 3615 |
| Base content per 1 kb (bases) | 388 | 612 | 271 | 117 | 293 | 319 |
| Base content (%) | 38.8% | 61.2% | ||||
D-loop:
No data available for this section.
| Total tRNA-coding genes (size: 1497 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 532 | 965 | 310 | 222 | 430 | 535 |
| Base content per 1 kb (bases) | 355 | 645 | 207 | 148 | 287 | 357 |
| Base content (%) | 35.5% | 64.5% | ||||
| Total rRNA-coding genes (size: 2500 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1018 | 1482 | 592 | 426 | 609 | 873 |
| Base content per 1 kb (bases) | 407 | 593 | 237 | 170 | 244 | 349 |
| Base content (%) | 40.7% | 59.3% | ||||
| 12S rRNA gene (size: 951 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 398 | 553 | 227 | 171 | 223 | 330 |
| Base content per 1 kb (bases) | 419 | 581 | 239 | 180 | 234 | 347 |
| Base content (%) | 41.9% | 58.1% | ||||
| 16S rRNA gene (size: 1549 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 620 | 929 | 365 | 255 | 386 | 543 |
| Base content per 1 kb (bases) | 400 | 600 | 236 | 165 | 249 | 351 |
| Base content (%) | 40.0% | 60.0% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 255 | 426 | 190 | 65 | 205 | 221 |
| Base content per 1 kb (bases) | 374 | 626 | 279 | 95 | 301 | 325 |
| Base content (%) | 37.4% | 62.6% | ||||
| ATP8 (size: 207 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 55 | 152 | 39 | 16 | 71 | 81 |
| Base content per 1 kb (bases) | 266 | 734 | 188 | 77 | 343 | 391 |
| Base content (%) | 26.6% | 73.4% | ||||
| COX1 (size: 1557 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 630 | 927 | 387 | 243 | 485 | 442 |
| Base content per 1 kb (bases) | 405 | 595 | 249 | 156 | 311 | 284 |
| Base content (%) | 40.5% | 59.5% | ||||
| COX2 (size: 688 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 273 | 415 | 177 | 96 | 198 | 217 |
| Base content per 1 kb (bases) | 397 | 603 | 257 | 140 | 288 | 315 |
| Base content (%) | 39.7% | 60.3% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 331 | 453 | 213 | 118 | 234 | 219 |
| Base content per 1 kb (bases) | 422 | 578 | 272 | 151 | 298 | 279 |
| Base content (%) | 42.2% | 57.8% | ||||
| CYTB (size: 1137 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 472 | 665 | 331 | 141 | 338 | 327 |
| Base content per 1 kb (bases) | 415 | 585 | 291 | 124 | 297 | 288 |
| Base content (%) | 41.5% | 58.5% | ||||
| ND1 (size: 956 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 389 | 567 | 281 | 108 | 266 | 301 |
| Base content per 1 kb (bases) | 407 | 593 | 294 | 113 | 278 | 315 |
| Base content (%) | 40.7% | 59.3% | ||||
| ND2 (size: 1039 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 358 | 681 | 279 | 79 | 310 | 371 |
| Base content per 1 kb (bases) | 345 | 655 | 269 | 76 | 298 | 357 |
| Base content (%) | 34.5% | 65.5% | ||||
| ND3 (size: 346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 134 | 212 | 92 | 42 | 105 | 107 |
| Base content per 1 kb (bases) | 387 | 613 | 266 | 121 | 303 | 309 |
| Base content (%) | 38.7% | 61.3% | ||||
| ND4 (size: 1375 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 517 | 858 | 371 | 146 | 404 | 454 |
| Base content per 1 kb (bases) | 376 | 624 | 270 | 106 | 294 | 330 |
| Base content (%) | 37.6% | 62.4% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 97 | 200 | 67 | 30 | 104 | 96 |
| Base content per 1 kb (bases) | 327 | 673 | 226 | 101 | 350 | 323 |
| Base content (%) | 32.7% | 67.3% | ||||
| ND5 (size: 1794 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 710 | 1084 | 511 | 199 | 508 | 576 |
| Base content per 1 kb (bases) | 396 | 604 | 285 | 111 | 283 | 321 |
| Base content (%) | 39.6% | 60.4% | ||||
| ND6 (size: 543 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 199 | 344 | 147 | 52 | 121 | 223 |
| Base content per 1 kb (bases) | 366 | 634 | 271 | 96 | 223 | 411 |
| Base content (%) | 36.6% | 63.4% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.98%) 
Alanine (Ala, A)
n = 14 (6.19%) 
Serine (Ser, S)
n = 17 (7.52%) 
Threonine (Thr, T)
n = 23 (10.18%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 9 (3.98%) 
Leucine (Leu, L)
n = 50 (22.12%) 
Isoleucine (Ile, I)
n = 28 (12.39%) 
Methionine (Met, M)
n = 12 (5.31%) 
Proline (Pro, P)
n = 12 (5.31%) 
Phenylalanine (Phe, F)
n = 8 (3.54%) 
Tyrosine (Tyr, Y)
n = 4 (1.77%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 0 (0%) 
Glutamic acid (Glu, E)
n = 2 (0.88%) 
Asparagine (Asn, N)
n = 13 (5.75%) 
Glutamine (Gln, Q)
n = 9 (3.98%) 
Histidine (His, H)
n = 5 (2.21%) 
Lysine (Lys, K)
n = 4 (1.77%) 
Arginine (Arg, R)
n = 4 (1.77%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 20 | 8 | 9 | 6 | 4 | 29 | 4 | 7 | 8 | 1 | 2 | 1 | 5 | 1 | 6 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 1 | 6 | 7 | 0 | 1 | 2 | 6 | 0 | 4 | 6 | 2 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 10 | 0 | 4 | 5 | 3 | 1 | 1 | 3 | 2 | 2 | 0 | 0 | 4 | 9 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 2 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 34 | 73 | 84 | 36 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 20 | 62 | 38 | 107 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 55 | 99 | 62 | ||||||||||||
| ATP8 (size: 207 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLEISSWPAVILSMVVALFYSIQMKMLNFTFYTSPLSNNIKNYKYKTTWQMKWTKIYLPLSTSPLS* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (2.94%)
Serine (Ser, S)
n = 9 (13.24%)
Threonine (Thr, T)
n = 6 (8.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (4.41%)
Leucine (Leu, L)
n = 8 (11.76%)
Isoleucine (Ile, I)
n = 5 (7.35%)
Methionine (Met, M)
n = 5 (7.35%)
Proline (Pro, P)
n = 5 (7.35%)
Phenylalanine (Phe, F)
n = 3 (4.41%)
Tyrosine (Tyr, Y)
n = 5 (7.35%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.47%)
Asparagine (Asn, N)
n = 4 (5.88%)
Glutamine (Gln, Q)
n = 3 (4.41%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 6 (8.82%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 3 | 4 | 1 | 0 | 2 | 0 | 3 | 3 | 0 | 1 | 0 | 1 | 1 | 3 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 2 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 4 | 0 | 2 | 1 | 5 | 0 | 0 | 1 | 5 | 0 | 0 | 2 | 4 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 0 | 1 | 0 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 6 | 11 | 27 | 25 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 4 | 21 | 20 | 24 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 7 | 34 | 22 | ||||||||||||
| COX1 (size: 1557 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.88%)
Alanine (Ala, A)
n = 37 (7.14%)
Serine (Ser, S)
n = 33 (6.37%)
Threonine (Thr, T)
n = 39 (7.53%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 33 (6.37%)
Leucine (Leu, L)
n = 61 (11.78%)
Isoleucine (Ile, I)
n = 41 (7.92%)
Methionine (Met, M)
n = 31 (5.98%)
Proline (Pro, P)
n = 29 (5.6%)
Phenylalanine (Phe, F)
n = 41 (7.92%)
Tyrosine (Tyr, Y)
n = 21 (4.05%)
Tryptophan (Trp, W)
n = 16 (3.09%)
Aspartic acid (Asp, D)
n = 15 (2.9%)
Glutamic acid (Glu, E)
n = 11 (2.12%)
Asparagine (Asn, N)
n = 18 (3.47%)
Glutamine (Gln, Q)
n = 7 (1.35%)
Histidine (His, H)
n = 19 (3.67%)
Lysine (Lys, K)
n = 11 (2.12%)
Arginine (Arg, R)
n = 8 (1.54%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 32 | 9 | 25 | 12 | 9 | 25 | 3 | 9 | 5 | 2 | 6 | 9 | 16 | 2 | 28 | 13 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 1 | 11 | 12 | 13 | 1 | 8 | 14 | 20 | 4 | 9 | 7 | 12 | 1 | 15 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 15 | 0 | 6 | 8 | 15 | 0 | 2 | 2 | 10 | 11 | 1 | 3 | 5 | 13 | 7 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 11 | 0 | 5 | 10 | 11 | 0 | 2 | 2 | 3 | 1 | 0 | 1 | 0 | 0 | 15 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 142 | 112 | 145 | 120 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 76 | 134 | 102 | 207 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 25 | 141 | 195 | 158 | ||||||||||||
| COX2 (size: 688 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 16 (7.02%)
Serine (Ser, S)
n = 18 (7.89%)
Threonine (Thr, T)
n = 14 (6.14%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 10 (4.39%)
Leucine (Leu, L)
n = 29 (12.72%)
Isoleucine (Ile, I)
n = 23 (10.09%)
Methionine (Met, M)
n = 13 (5.7%)
Proline (Pro, P)
n = 12 (5.26%)
Phenylalanine (Phe, F)
n = 11 (4.82%)
Tyrosine (Tyr, Y)
n = 13 (5.7%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 10 (4.39%)
Glutamic acid (Glu, E)
n = 14 (6.14%)
Asparagine (Asn, N)
n = 6 (2.63%)
Glutamine (Gln, Q)
n = 8 (3.51%)
Histidine (His, H)
n = 7 (3.07%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.63%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 17 | 6 | 10 | 4 | 5 | 12 | 1 | 6 | 6 | 2 | 1 | 2 | 7 | 0 | 7 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 2 | 0 | 3 | 7 | 6 | 0 | 1 | 4 | 2 | 1 | 4 | 2 | 6 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 6 | 0 | 2 | 3 | 9 | 0 | 0 | 4 | 4 | 9 | 1 | 1 | 1 | 5 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 11 | 3 | 5 | 5 | 3 | 1 | 2 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 58 | 55 | 64 | 52 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 56 | 62 | 86 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 66 | 91 | 59 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 27 (10.38%)
Isoleucine (Ile, I)
n = 12 (4.62%)
Methionine (Met, M)
n = 12 (4.62%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 14 (5.38%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 10 (3.85%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 1 (0.38%)
Arginine (Arg, R)
n = 4 (1.54%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 4 | 10 | 6 | 2 | 12 | 2 | 5 | 9 | 1 | 6 | 3 | 5 | 0 | 11 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 5 | 9 | 6 | 1 | 2 | 8 | 10 | 0 | 3 | 3 | 7 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 14 | 1 | 6 | 3 | 5 | 1 | 0 | 4 | 7 | 7 | 0 | 0 | 3 | 1 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 7 | 1 | 4 | 1 | 1 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 66 | 55 | 72 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 41 | 71 | 59 | 90 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 9 | 76 | 105 | 71 | ||||||||||||
| CYTB (size: 1137 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 23 (6.08%)
Alanine (Ala, A)
n = 23 (6.08%)
Serine (Ser, S)
n = 30 (7.94%)
Threonine (Thr, T)
n = 30 (7.94%)
Cysteine (Cys, C)
n = 2 (0.53%)
Valine (Val, V)
n = 12 (3.17%)
Leucine (Leu, L)
n = 59 (15.61%)
Isoleucine (Ile, I)
n = 39 (10.32%)
Methionine (Met, M)
n = 14 (3.7%)
Proline (Pro, P)
n = 25 (6.61%)
Phenylalanine (Phe, F)
n = 28 (7.41%)
Tyrosine (Tyr, Y)
n = 14 (3.7%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 13 (3.44%)
Glutamic acid (Glu, E)
n = 3 (0.79%)
Asparagine (Asn, N)
n = 15 (3.97%)
Glutamine (Gln, Q)
n = 8 (2.12%)
Histidine (His, H)
n = 11 (2.91%)
Lysine (Lys, K)
n = 10 (2.65%)
Arginine (Arg, R)
n = 7 (1.85%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 23 | 16 | 12 | 13 | 4 | 28 | 4 | 9 | 5 | 3 | 3 | 3 | 5 | 1 | 15 | 13 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 1 | 6 | 10 | 7 | 0 | 2 | 14 | 7 | 0 | 3 | 9 | 13 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 18 | 0 | 4 | 11 | 8 | 1 | 1 | 5 | 3 | 11 | 2 | 1 | 5 | 10 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 2 | 1 | 6 | 7 | 10 | 0 | 0 | 2 | 4 | 1 | 0 | 0 | 0 | 1 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 74 | 100 | 114 | 91 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 50 | 102 | 75 | 152 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 17 | 129 | 138 | 95 | ||||||||||||
| ND1 (size: 956 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.47%)
Alanine (Ala, A)
n = 32 (10.09%)
Serine (Ser, S)
n = 25 (7.89%)
Threonine (Thr, T)
n = 27 (8.52%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 9 (2.84%)
Leucine (Leu, L)
n = 60 (18.93%)
Isoleucine (Ile, I)
n = 25 (7.89%)
Methionine (Met, M)
n = 21 (6.62%)
Proline (Pro, P)
n = 21 (6.62%)
Phenylalanine (Phe, F)
n = 14 (4.42%)
Tyrosine (Tyr, Y)
n = 14 (4.42%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 11 (3.47%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 7 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 9 | 18 | 8 | 9 | 32 | 3 | 8 | 6 | 0 | 2 | 2 | 5 | 0 | 6 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 0 | 8 | 10 | 13 | 1 | 2 | 7 | 2 | 0 | 3 | 9 | 9 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 13 | 0 | 2 | 4 | 14 | 2 | 2 | 1 | 6 | 8 | 2 | 0 | 2 | 9 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 11 | 0 | 1 | 2 | 7 | 0 | 1 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | 7 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 66 | 90 | 94 | 68 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 31 | 102 | 56 | 129 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 89 | 150 | 68 | ||||||||||||
| ND2 (size: 1039 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 18 (5.22%)
Serine (Ser, S)
n = 30 (8.7%)
Threonine (Thr, T)
n = 35 (10.14%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (2.61%)
Leucine (Leu, L)
n = 62 (17.97%)
Isoleucine (Ile, I)
n = 38 (11.01%)
Methionine (Met, M)
n = 31 (8.99%)
Proline (Pro, P)
n = 22 (6.38%)
Phenylalanine (Phe, F)
n = 12 (3.48%)
Tyrosine (Tyr, Y)
n = 11 (3.19%)
Tryptophan (Trp, W)
n = 11 (3.19%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 22 (6.38%)
Glutamine (Gln, Q)
n = 10 (2.9%)
Histidine (His, H)
n = 5 (1.45%)
Lysine (Lys, K)
n = 11 (3.19%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 21 | 17 | 30 | 8 | 10 | 28 | 2 | 14 | 10 | 0 | 4 | 1 | 4 | 0 | 7 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 7 | 5 | 6 | 0 | 2 | 5 | 5 | 0 | 5 | 7 | 10 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 24 | 0 | 6 | 8 | 10 | 1 | 2 | 3 | 6 | 5 | 1 | 0 | 10 | 12 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 4 | 0 | 0 | 0 | 11 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 43 | 88 | 142 | 73 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 31 | 100 | 63 | 152 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 5 | 91 | 166 | 84 | ||||||||||||
| ND3 (size: 1039 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 18 (5.22%)
Serine (Ser, S)
n = 30 (8.7%)
Threonine (Thr, T)
n = 35 (10.14%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (2.61%)
Leucine (Leu, L)
n = 62 (17.97%)
Isoleucine (Ile, I)
n = 38 (11.01%)
Methionine (Met, M)
n = 31 (8.99%)
Proline (Pro, P)
n = 22 (6.38%)
Phenylalanine (Phe, F)
n = 12 (3.48%)
Tyrosine (Tyr, Y)
n = 11 (3.19%)
Tryptophan (Trp, W)
n = 11 (3.19%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 22 (6.38%)
Glutamine (Gln, Q)
n = 10 (2.9%)
Histidine (His, H)
n = 5 (1.45%)
Lysine (Lys, K)
n = 11 (3.19%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 21 | 17 | 30 | 8 | 10 | 28 | 2 | 14 | 10 | 0 | 4 | 1 | 4 | 0 | 7 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 7 | 5 | 6 | 0 | 2 | 5 | 5 | 0 | 5 | 7 | 10 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 24 | 0 | 6 | 8 | 10 | 1 | 2 | 3 | 6 | 5 | 1 | 0 | 10 | 12 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 4 | 0 | 0 | 0 | 11 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 43 | 88 | 142 | 73 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 31 | 100 | 63 | 152 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 5 | 91 | 166 | 84 | ||||||||||||
| ND4 (size: 1375 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 19 (4.16%)
Alanine (Ala, A)
n = 28 (6.13%)
Serine (Ser, S)
n = 35 (7.66%)
Threonine (Thr, T)
n = 43 (9.41%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 13 (2.84%)
Leucine (Leu, L)
n = 93 (20.35%)
Isoleucine (Ile, I)
n = 35 (7.66%)
Methionine (Met, M)
n = 39 (8.53%)
Proline (Pro, P)
n = 29 (6.35%)
Phenylalanine (Phe, F)
n = 18 (3.94%)
Tyrosine (Tyr, Y)
n = 18 (3.94%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 23 (5.03%)
Glutamine (Gln, Q)
n = 8 (1.75%)
Histidine (His, H)
n = 9 (1.97%)
Lysine (Lys, K)
n = 12 (2.63%)
Arginine (Arg, R)
n = 10 (2.19%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 23 | 12 | 34 | 15 | 6 | 45 | 4 | 21 | 6 | 2 | 4 | 2 | 6 | 1 | 10 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 2 | 3 | 12 | 13 | 0 | 3 | 7 | 8 | 1 | 7 | 10 | 12 | 0 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 14 | 20 | 0 | 3 | 8 | 14 | 2 | 4 | 4 | 6 | 12 | 4 | 2 | 9 | 14 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 7 | 1 | 2 | 0 | 11 | 1 | 1 | 1 | 8 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 70 | 126 | 160 | 102 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 53 | 127 | 80 | 198 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 23 | 118 | 214 | 103 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 5 (5.1%)
Leucine (Leu, L)
n = 25 (25.51%)
Isoleucine (Ile, I)
n = 6 (6.12%)
Methionine (Met, M)
n = 10 (10.2%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 5 (5.1%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 3 | 3 | 9 | 1 | 1 | 14 | 0 | 9 | 2 | 0 | 2 | 0 | 3 | 0 | 5 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 3 | 3 | 1 | 5 | 0 | 0 | 3 | 1 | 0 | 1 | 0 | 0 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 2 | 0 | 0 | 4 | 3 | 0 | 0 | 0 | 3 | 2 | 0 | 0 | 3 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 21 | 23 | 25 | 30 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 8 | 21 | 19 | 51 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 1 | 23 | 52 | 23 | ||||||||||||
| ND5 (size: 1794 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 29 (4.86%)
Alanine (Ala, A)
n = 39 (6.53%)
Serine (Ser, S)
n = 52 (8.71%)
Threonine (Thr, T)
n = 60 (10.05%)
Cysteine (Cys, C)
n = 3 (0.5%)
Valine (Val, V)
n = 20 (3.35%)
Leucine (Leu, L)
n = 89 (14.91%)
Isoleucine (Ile, I)
n = 55 (9.21%)
Methionine (Met, M)
n = 41 (6.87%)
Proline (Pro, P)
n = 29 (4.86%)
Phenylalanine (Phe, F)
n = 38 (6.37%)
Tyrosine (Tyr, Y)
n = 22 (3.69%)
Tryptophan (Trp, W)
n = 12 (2.01%)
Aspartic acid (Asp, D)
n = 8 (1.34%)
Glutamic acid (Glu, E)
n = 12 (2.01%)
Asparagine (Asn, N)
n = 28 (4.69%)
Glutamine (Gln, Q)
n = 17 (2.85%)
Histidine (His, H)
n = 12 (2.01%)
Lysine (Lys, K)
n = 23 (3.85%)
Arginine (Arg, R)
n = 8 (1.34%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 34 | 21 | 33 | 19 | 20 | 39 | 1 | 10 | 16 | 1 | 4 | 3 | 11 | 2 | 14 | 24 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 2 | 1 | 12 | 12 | 14 | 1 | 2 | 16 | 10 | 1 | 5 | 12 | 12 | 0 | 13 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 20 | 26 | 1 | 5 | 13 | 19 | 2 | 4 | 9 | 6 | 16 | 3 | 0 | 14 | 14 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 8 | 4 | 2 | 6 | 21 | 2 | 2 | 2 | 4 | 0 | 0 | 0 | 1 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 108 | 145 | 220 | 125 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 65 | 167 | 123 | 243 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 26 | 199 | 233 | 140 | ||||||||||||
| ND6 (size: 543 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 25 (13.89%)
Alanine (Ala, A)
n = 11 (6.11%)
Serine (Ser, S)
n = 10 (5.56%)
Threonine (Thr, T)
n = 11 (6.11%)
Cysteine (Cys, C)
n = 2 (1.11%)
Valine (Val, V)
n = 22 (12.22%)
Leucine (Leu, L)
n = 22 (12.22%)
Isoleucine (Ile, I)
n = 12 (6.67%)
Methionine (Met, M)
n = 13 (7.22%)
Proline (Pro, P)
n = 6 (3.33%)
Phenylalanine (Phe, F)
n = 11 (6.11%)
Tyrosine (Tyr, Y)
n = 10 (5.56%)
Tryptophan (Trp, W)
n = 5 (2.78%)
Aspartic acid (Asp, D)
n = 4 (2.22%)
Glutamic acid (Glu, E)
n = 8 (4.44%)
Asparagine (Asn, N)
n = 2 (1.11%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.56%)
Lysine (Lys, K)
n = 3 (1.67%)
Arginine (Arg, R)
n = 2 (1.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 0 | 4 | 2 | 0 | 1 | 0 | 13 | 0 | 0 | 9 | 0 | 10 | 3 | 11 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 9 | 2 | 0 | 6 | 1 | 3 | 1 | 14 | 2 | 2 | 7 | 5 | 0 | 0 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 3 | 2 | 3 | 0 | 1 | 2 | 4 | 0 | 7 | 3 | 1 | 6 | 2 | 0 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 5 | 3 | 4 | 0 | 1 | 2 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 70 | 12 | 45 | 54 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 34 | 29 | 80 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 39 | 6 | 47 | 89 | ||||||||||||
| Total protein-coding genes (size: 11404 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 209 (5.5%)
Alanine (Ala, A)
n = 259 (6.82%)
Serine (Ser, S)
n = 287 (7.56%)
Threonine (Thr, T)
n = 328 (8.64%)
Cysteine (Cys, C)
n = 19 (0.5%)
Valine (Val, V)
n = 165 (4.34%)
Leucine (Leu, L)
n = 611 (16.09%)
Isoleucine (Ile, I)
n = 327 (8.61%)
Methionine (Met, M)
n = 245 (6.45%)
Proline (Pro, P)
n = 210 (5.53%)
Phenylalanine (Phe, F)
n = 221 (5.82%)
Tyrosine (Tyr, Y)
n = 155 (4.08%)
Tryptophan (Trp, W)
n = 105 (2.76%)
Aspartic acid (Asp, D)
n = 65 (1.71%)
Glutamic acid (Glu, E)
n = 89 (2.34%)
Asparagine (Asn, N)
n = 157 (4.13%)
Glutamine (Gln, Q)
n = 91 (2.4%)
Histidine (His, H)
n = 94 (2.47%)
Lysine (Lys, K)
n = 95 (2.5%)
Arginine (Arg, R)
n = 60 (1.58%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 218 | 109 | 200 | 98 | 73 | 281 | 26 | 118 | 78 | 13 | 47 | 27 | 80 | 11 | 127 | 94 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 45 | 10 | 9 | 65 | 92 | 97 | 5 | 37 | 82 | 75 | 15 | 54 | 66 | 88 | 2 | 77 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 87 | 159 | 5 | 43 | 70 | 106 | 12 | 20 | 36 | 67 | 88 | 15 | 15 | 67 | 90 | 35 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 59 | 75 | 14 | 30 | 35 | 88 | 7 | 11 | 12 | 33 | 4 | 0 | 1 | 3 | 3 | 90 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 787 | 933 | 1209 | 870 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 450 | 1028 | 752 | 1569 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 193 | 1029 | 1571 | 1006 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​a​c​a​j​a​o​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ c​a​l​v​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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