Viewing data for Lepus timidus
| Scientific name | Lepus timidus |
| Common name | Mountain hare |
| Maximum lifespan | 18.00 years (Lepus timidus@AnAge) |
| Total mtDNA (size: 17755 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6830 | 10881 | 4533 | 2297 | 5246 | 5635 |
| Base content per 1 kb (bases) | 385 | 613 | 255 | 129 | 295 | 317 |
| Base content (%) | 38.5% | 61.3% | ||||
| Total protein-coding genes (size: 11338 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4375 | 6963 | 3008 | 1367 | 3498 | 3465 |
| Base content per 1 kb (bases) | 386 | 614 | 265 | 121 | 309 | 306 |
| Base content (%) | 38.6% | 61.4% | ||||
| D-loop (size: 2308 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 882 | 1382 | 648 | 234 | 667 | 715 |
| Base content per 1 kb (bases) | 382 | 599 | 281 | 101 | 289 | 310 |
| Base content (%) | 38.2% | 59.9% | ||||
| Total tRNA-coding genes (size: 1511 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 556 | 955 | 319 | 237 | 435 | 520 |
| Base content per 1 kb (bases) | 368 | 632 | 211 | 157 | 288 | 344 |
| Base content (%) | 36.8% | 63.2% | ||||
| Total rRNA-coding genes (size: 2533 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 987 | 1546 | 539 | 448 | 632 | 914 |
| Base content per 1 kb (bases) | 390 | 610 | 213 | 177 | 250 | 361 |
| Base content (%) | 39.0% | 61.0% | ||||
| 12S rRNA gene (size: 956 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 382 | 574 | 211 | 171 | 226 | 348 |
| Base content per 1 kb (bases) | 400 | 600 | 221 | 179 | 236 | 364 |
| Base content (%) | 40.0% | 60.0% | ||||
| 16S rRNA gene (size: 1577 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 605 | 972 | 328 | 277 | 406 | 566 |
| Base content per 1 kb (bases) | 384 | 616 | 208 | 176 | 257 | 359 |
| Base content (%) | 38.4% | 61.6% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 274 | 407 | 195 | 79 | 200 | 207 |
| Base content per 1 kb (bases) | 402 | 598 | 286 | 116 | 294 | 304 |
| Base content (%) | 40.2% | 59.8% | ||||
| ATP8 (size: 204 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 73 | 131 | 60 | 13 | 57 | 74 |
| Base content per 1 kb (bases) | 358 | 642 | 294 | 64 | 279 | 363 |
| Base content (%) | 35.8% | 64.2% | ||||
| COX1 (size: 1542 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 621 | 921 | 360 | 261 | 499 | 422 |
| Base content per 1 kb (bases) | 403 | 597 | 233 | 169 | 324 | 274 |
| Base content (%) | 40.3% | 59.7% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 270 | 414 | 172 | 98 | 214 | 200 |
| Base content per 1 kb (bases) | 395 | 605 | 251 | 143 | 313 | 292 |
| Base content (%) | 39.5% | 60.5% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 323 | 461 | 208 | 115 | 244 | 217 |
| Base content per 1 kb (bases) | 412 | 588 | 265 | 147 | 311 | 277 |
| Base content (%) | 41.2% | 58.8% | ||||
| CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 474 | 666 | 330 | 144 | 345 | 321 |
| Base content per 1 kb (bases) | 416 | 584 | 289 | 126 | 303 | 282 |
| Base content (%) | 41.6% | 58.4% | ||||
| ND1 (size: 955 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 376 | 579 | 265 | 111 | 293 | 286 |
| Base content per 1 kb (bases) | 394 | 606 | 277 | 116 | 307 | 299 |
| Base content (%) | 39.4% | 60.6% | ||||
| ND2 (size: 1044 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 356 | 688 | 265 | 91 | 315 | 373 |
| Base content per 1 kb (bases) | 341 | 659 | 254 | 87 | 302 | 357 |
| Base content (%) | 34.1% | 65.9% | ||||
| ND3 (size: 347 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 129 | 218 | 83 | 46 | 115 | 103 |
| Base content per 1 kb (bases) | 372 | 628 | 239 | 133 | 331 | 297 |
| Base content (%) | 37.2% | 62.8% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 517 | 861 | 376 | 141 | 432 | 429 |
| Base content per 1 kb (bases) | 375 | 625 | 273 | 102 | 313 | 311 |
| Base content (%) | 37.5% | 62.5% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 107 | 190 | 67 | 40 | 113 | 77 |
| Base content per 1 kb (bases) | 360 | 640 | 226 | 135 | 380 | 259 |
| Base content (%) | 36.0% | 64.0% | ||||
| ND5 (size: 1812 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 680 | 1132 | 485 | 195 | 568 | 564 |
| Base content per 1 kb (bases) | 375 | 625 | 268 | 108 | 313 | 311 |
| Base content (%) | 37.5% | 62.5% | ||||
| ND6 (size: 525 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 191 | 334 | 155 | 36 | 120 | 214 |
| Base content per 1 kb (bases) | 364 | 636 | 295 | 69 | 229 | 408 |
| Base content (%) | 36.4% | 63.6% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%) 
Alanine (Ala, A)
n = 19 (8.41%) 
Serine (Ser, S)
n = 14 (6.19%) 
Threonine (Thr, T)
n = 21 (9.29%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 9 (3.98%) 
Leucine (Leu, L)
n = 42 (18.58%) 
Isoleucine (Ile, I)
n = 27 (11.95%) 
Methionine (Met, M)
n = 15 (6.64%) 
Proline (Pro, P)
n = 15 (6.64%) 
Phenylalanine (Phe, F)
n = 12 (5.31%) 
Tyrosine (Tyr, Y)
n = 3 (1.33%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 3 (1.33%) 
Asparagine (Asn, N)
n = 8 (3.54%) 
Glutamine (Gln, Q)
n = 8 (3.54%) 
Histidine (His, H)
n = 6 (2.65%) 
Lysine (Lys, K)
n = 4 (1.77%) 
Arginine (Arg, R)
n = 5 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 20 | 7 | 9 | 8 | 5 | 18 | 3 | 8 | 8 | 0 | 1 | 1 | 7 | 0 | 8 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 0 | 5 | 9 | 4 | 1 | 0 | 6 | 4 | 1 | 5 | 3 | 6 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 11 | 0 | 1 | 4 | 5 | 1 | 1 | 2 | 1 | 2 | 0 | 0 | 2 | 6 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 3 | 0 | 1 | 0 | 4 | 0 | 0 | 0 | 4 | 1 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 43 | 68 | 78 | 38 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 22 | 66 | 34 | 105 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 14 | 61 | 95 | 57 | ||||||||||||
| ATP8 (size: 204 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLDTSTWLVTIIAMILTLFALIQLKFHKYSYPLNPTPKTLKPTSFPSPWETKWTKIYSPLLLPQQ* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (2.99%)
Serine (Ser, S)
n = 5 (7.46%)
Threonine (Thr, T)
n = 9 (13.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.49%)
Leucine (Leu, L)
n = 11 (16.42%)
Isoleucine (Ile, I)
n = 5 (7.46%)
Methionine (Met, M)
n = 2 (2.99%)
Proline (Pro, P)
n = 9 (13.43%)
Phenylalanine (Phe, F)
n = 3 (4.48%)
Tyrosine (Tyr, Y)
n = 3 (4.48%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 1 (1.49%)
Asparagine (Asn, N)
n = 1 (1.49%)
Glutamine (Gln, Q)
n = 4 (5.97%)
Histidine (His, H)
n = 1 (1.49%)
Lysine (Lys, K)
n = 6 (8.96%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 4 | 1 | 4 | 1 | 2 | 0 | 4 | 3 | 1 | 0 | 0 | 1 | 0 | 2 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 5 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 6 | 1 | 1 | 3 | 0 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 1 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 1 | 0 | 0 | 1 | 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 5 | 21 | 24 | 18 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 4 | 24 | 18 | 22 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 15 | 32 | 17 | ||||||||||||
| COX1 (size: 1542 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.16%)
Alanine (Ala, A)
n = 43 (8.38%)
Serine (Ser, S)
n = 29 (5.65%)
Threonine (Thr, T)
n = 38 (7.41%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 38 (7.41%)
Leucine (Leu, L)
n = 59 (11.5%)
Isoleucine (Ile, I)
n = 36 (7.02%)
Methionine (Met, M)
n = 32 (6.24%)
Proline (Pro, P)
n = 28 (5.46%)
Phenylalanine (Phe, F)
n = 42 (8.19%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 11 (2.14%)
Asparagine (Asn, N)
n = 16 (3.12%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.51%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 27 | 9 | 28 | 14 | 8 | 12 | 3 | 20 | 5 | 2 | 12 | 1 | 20 | 5 | 19 | 23 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 1 | 19 | 16 | 8 | 0 | 9 | 9 | 21 | 8 | 8 | 6 | 14 | 0 | 11 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 14 | 1 | 10 | 5 | 9 | 2 | 2 | 1 | 9 | 10 | 1 | 2 | 8 | 8 | 8 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 8 | 3 | 7 | 8 | 9 | 0 | 1 | 0 | 7 | 0 | 0 | 0 | 1 | 0 | 16 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 154 | 98 | 134 | 128 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 76 | 135 | 96 | 207 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 31 | 127 | 192 | 164 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 8 (3.52%)
Serine (Ser, S)
n = 22 (9.69%)
Threonine (Thr, T)
n = 15 (6.61%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 11 (4.85%)
Leucine (Leu, L)
n = 33 (14.54%)
Isoleucine (Ile, I)
n = 21 (9.25%)
Methionine (Met, M)
n = 15 (6.61%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 12 (5.29%)
Glutamic acid (Glu, E)
n = 13 (5.73%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 8 | 11 | 11 | 6 | 6 | 2 | 7 | 5 | 1 | 5 | 2 | 4 | 0 | 5 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 2 | 0 | 5 | 2 | 1 | 0 | 1 | 4 | 2 | 1 | 5 | 4 | 4 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 7 | 3 | 5 | 6 | 6 | 0 | 1 | 4 | 6 | 3 | 1 | 1 | 3 | 4 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 10 | 3 | 7 | 5 | 2 | 2 | 0 | 2 | 4 | 0 | 0 | 0 | 0 | 1 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 52 | 59 | 67 | 50 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 54 | 60 | 88 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 20 | 59 | 73 | 76 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 16 (6.15%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 7 (2.69%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 3 | 7 | 9 | 6 | 10 | 2 | 7 | 6 | 2 | 6 | 5 | 4 | 0 | 11 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 2 | 3 | 8 | 5 | 0 | 6 | 6 | 9 | 0 | 4 | 4 | 4 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 11 | 0 | 1 | 2 | 14 | 0 | 2 | 2 | 9 | 2 | 0 | 0 | 3 | 4 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 6 | 2 | 3 | 0 | 3 | 0 | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 63 | 68 | 59 | 71 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 67 | 56 | 94 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 73 | 102 | 78 | ||||||||||||
| CYTB (size: 1140 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 24 (6.33%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 23 (6.07%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 18 (4.75%)
Leucine (Leu, L)
n = 60 (15.83%)
Isoleucine (Ile, I)
n = 42 (11.08%)
Methionine (Met, M)
n = 15 (3.96%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 25 (6.6%)
Tyrosine (Tyr, Y)
n = 16 (4.22%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 15 (3.96%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 23 | 19 | 13 | 13 | 16 | 23 | 1 | 7 | 6 | 0 | 8 | 3 | 6 | 1 | 11 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 3 | 5 | 8 | 11 | 0 | 4 | 8 | 12 | 0 | 6 | 8 | 8 | 1 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 10 | 0 | 4 | 6 | 12 | 0 | 0 | 3 | 6 | 10 | 2 | 0 | 6 | 9 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 5 | 1 | 1 | 10 | 9 | 1 | 3 | 2 | 3 | 0 | 0 | 1 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 83 | 103 | 109 | 85 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 51 | 92 | 77 | 160 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 135 | 135 | 100 | ||||||||||||
| ND1 (size: 955 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.1%)
Alanine (Ala, A)
n = 27 (8.52%)
Serine (Ser, S)
n = 24 (7.57%)
Threonine (Thr, T)
n = 23 (7.26%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 10 (3.15%)
Leucine (Leu, L)
n = 59 (18.61%)
Isoleucine (Ile, I)
n = 26 (8.2%)
Methionine (Met, M)
n = 20 (6.31%)
Proline (Pro, P)
n = 21 (6.62%)
Phenylalanine (Phe, F)
n = 22 (6.94%)
Tyrosine (Tyr, Y)
n = 12 (3.79%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 12 (3.79%)
Glutamine (Gln, Q)
n = 5 (1.58%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 8 (2.52%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 15 | 16 | 11 | 11 | 23 | 0 | 13 | 5 | 0 | 2 | 3 | 5 | 0 | 10 | 12 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 1 | 1 | 5 | 8 | 13 | 1 | 3 | 7 | 1 | 2 | 4 | 9 | 8 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 11 | 0 | 4 | 2 | 14 | 0 | 2 | 2 | 5 | 7 | 1 | 1 | 5 | 7 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 11 | 0 | 3 | 0 | 5 | 2 | 1 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 83 | 92 | 79 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 36 | 91 | 54 | 137 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 91 | 140 | 76 | ||||||||||||
| ND2 (size: 1044 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.32%)
Alanine (Ala, A)
n = 19 (5.48%)
Serine (Ser, S)
n = 22 (6.34%)
Threonine (Thr, T)
n = 35 (10.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (2.02%)
Leucine (Leu, L)
n = 55 (15.85%)
Isoleucine (Ile, I)
n = 46 (13.26%)
Methionine (Met, M)
n = 34 (9.8%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 17 (4.9%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 19 (5.48%)
Glutamine (Gln, Q)
n = 12 (3.46%)
Histidine (His, H)
n = 4 (1.15%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 28 | 18 | 28 | 5 | 8 | 24 | 2 | 16 | 10 | 2 | 2 | 2 | 3 | 0 | 12 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 0 | 4 | 10 | 5 | 0 | 1 | 7 | 7 | 0 | 5 | 6 | 11 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 21 | 0 | 4 | 5 | 11 | 1 | 0 | 1 | 4 | 3 | 0 | 0 | 7 | 12 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 5 | 0 | 0 | 2 | 10 | 2 | 1 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 48 | 81 | 147 | 72 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 30 | 97 | 62 | 159 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 87 | 164 | 84 | ||||||||||||
| ND3 (size: 1044 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.32%)
Alanine (Ala, A)
n = 19 (5.48%)
Serine (Ser, S)
n = 22 (6.34%)
Threonine (Thr, T)
n = 35 (10.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (2.02%)
Leucine (Leu, L)
n = 55 (15.85%)
Isoleucine (Ile, I)
n = 46 (13.26%)
Methionine (Met, M)
n = 34 (9.8%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 17 (4.9%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 19 (5.48%)
Glutamine (Gln, Q)
n = 12 (3.46%)
Histidine (His, H)
n = 4 (1.15%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 28 | 18 | 28 | 5 | 8 | 24 | 2 | 16 | 10 | 2 | 2 | 2 | 3 | 0 | 12 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 0 | 4 | 10 | 5 | 0 | 1 | 7 | 7 | 0 | 5 | 6 | 11 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 21 | 0 | 4 | 5 | 11 | 1 | 0 | 1 | 4 | 3 | 0 | 0 | 7 | 12 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 5 | 0 | 0 | 2 | 10 | 2 | 1 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 48 | 81 | 147 | 72 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 30 | 97 | 62 | 159 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 87 | 164 | 84 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 30 (6.55%)
Serine (Ser, S)
n = 41 (8.95%)
Threonine (Thr, T)
n = 42 (9.17%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 13 (2.84%)
Leucine (Leu, L)
n = 98 (21.4%)
Isoleucine (Ile, I)
n = 42 (9.17%)
Methionine (Met, M)
n = 30 (6.55%)
Proline (Pro, P)
n = 21 (4.59%)
Phenylalanine (Phe, F)
n = 17 (3.71%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 10 (2.18%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 22 | 20 | 26 | 27 | 15 | 34 | 5 | 16 | 8 | 2 | 4 | 5 | 4 | 0 | 10 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 1 | 2 | 6 | 10 | 14 | 0 | 4 | 3 | 10 | 0 | 8 | 4 | 9 | 0 | 12 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 19 | 1 | 8 | 12 | 11 | 1 | 4 | 5 | 9 | 5 | 0 | 1 | 13 | 10 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 9 | 1 | 1 | 2 | 10 | 1 | 2 | 1 | 7 | 0 | 0 | 0 | 0 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 73 | 133 | 157 | 96 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 52 | 125 | 82 | 200 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 118 | 190 | 135 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 7 (7.14%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 7 (7.14%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 5 (5.1%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 3 | 4 | 6 | 3 | 2 | 6 | 2 | 9 | 1 | 1 | 3 | 2 | 2 | 0 | 4 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 2 | 1 | 4 | 1 | 2 | 0 | 2 | 1 | 1 | 1 | 0 | 1 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 3 | 0 | 5 | 1 | 1 | 0 | 0 | 0 | 2 | 3 | 0 | 0 | 4 | 1 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 22 | 20 | 25 | 32 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 8 | 21 | 18 | 52 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 26 | 34 | 29 | ||||||||||||
| ND5 (size: 1812 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.48%)
Alanine (Ala, A)
n = 45 (7.46%)
Serine (Ser, S)
n = 55 (9.12%)
Threonine (Thr, T)
n = 53 (8.79%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 21 (3.48%)
Leucine (Leu, L)
n = 88 (14.59%)
Isoleucine (Ile, I)
n = 64 (10.61%)
Methionine (Met, M)
n = 32 (5.31%)
Proline (Pro, P)
n = 22 (3.65%)
Phenylalanine (Phe, F)
n = 45 (7.46%)
Tyrosine (Tyr, Y)
n = 16 (2.65%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 11 (1.82%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 36 (5.97%)
Glutamine (Gln, Q)
n = 19 (3.15%)
Histidine (His, H)
n = 14 (2.32%)
Lysine (Lys, K)
n = 20 (3.32%)
Arginine (Arg, R)
n = 8 (1.33%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 36 | 28 | 29 | 20 | 20 | 27 | 4 | 15 | 19 | 0 | 7 | 4 | 10 | 0 | 20 | 25 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 2 | 2 | 10 | 19 | 16 | 0 | 5 | 9 | 12 | 1 | 4 | 8 | 9 | 1 | 14 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 18 | 20 | 1 | 13 | 10 | 19 | 1 | 7 | 5 | 10 | 6 | 2 | 2 | 20 | 16 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 9 | 2 | 6 | 5 | 20 | 0 | 2 | 3 | 3 | 0 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 115 | 134 | 217 | 138 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 63 | 163 | 128 | 250 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 17 | 188 | 219 | 180 | ||||||||||||
| ND6 (size: 525 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.94%)
Alanine (Ala, A)
n = 7 (4.02%)
Serine (Ser, S)
n = 15 (8.62%)
Threonine (Thr, T)
n = 6 (3.45%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 23 (13.22%)
Leucine (Leu, L)
n = 19 (10.92%)
Isoleucine (Ile, I)
n = 15 (8.62%)
Methionine (Met, M)
n = 14 (8.05%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 14 (8.05%)
Tyrosine (Tyr, Y)
n = 7 (4.02%)
Tryptophan (Trp, W)
n = 4 (2.3%)
Aspartic acid (Asp, D)
n = 5 (2.87%)
Glutamic acid (Glu, E)
n = 9 (5.17%)
Asparagine (Asn, N)
n = 2 (1.15%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.15%)
Arginine (Arg, R)
n = 2 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 0 | 7 | 2 | 0 | 1 | 2 | 11 | 0 | 0 | 7 | 0 | 9 | 7 | 12 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 1 | 0 | 2 | 0 | 4 | 1 | 11 | 0 | 5 | 10 | 2 | 0 | 1 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 2 | 0 | 4 | 0 | 2 | 0 | 9 | 0 | 6 | 1 | 3 | 3 | 1 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 1 | 8 | 5 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 70 | 10 | 48 | 47 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 42 | 22 | 26 | 85 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 43 | 4 | 46 | 82 | ||||||||||||
| Total protein-coding genes (size: 11393 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 217 (5.72%)
Alanine (Ala, A)
n = 257 (6.77%)
Serine (Ser, S)
n = 287 (7.56%)
Threonine (Thr, T)
n = 294 (7.75%)
Cysteine (Cys, C)
n = 22 (0.58%)
Valine (Val, V)
n = 178 (4.69%)
Leucine (Leu, L)
n = 606 (15.97%)
Isoleucine (Ile, I)
n = 358 (9.43%)
Methionine (Met, M)
n = 232 (6.11%)
Proline (Pro, P)
n = 198 (5.22%)
Phenylalanine (Phe, F)
n = 242 (6.38%)
Tyrosine (Tyr, Y)
n = 125 (3.29%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 70 (1.84%)
Glutamic acid (Glu, E)
n = 96 (2.53%)
Asparagine (Asn, N)
n = 157 (4.14%)
Glutamine (Gln, Q)
n = 90 (2.37%)
Histidine (His, H)
n = 97 (2.56%)
Lysine (Lys, K)
n = 91 (2.4%)
Arginine (Arg, R)
n = 66 (1.74%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 216 | 142 | 186 | 134 | 100 | 195 | 28 | 138 | 78 | 12 | 59 | 28 | 77 | 14 | 129 | 113 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 46 | 8 | 14 | 66 | 99 | 87 | 5 | 44 | 62 | 85 | 26 | 57 | 56 | 81 | 4 | 76 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 74 | 137 | 7 | 61 | 57 | 107 | 7 | 28 | 27 | 71 | 54 | 10 | 11 | 75 | 82 | 35 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 62 | 74 | 22 | 36 | 34 | 81 | 10 | 12 | 9 | 44 | 1 | 0 | 1 | 6 | 2 | 94 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 818 | 908 | 1188 | 882 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 465 | 981 | 734 | 1616 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 206 | 1013 | 1470 | 1107 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​L​e​p​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ t​i​m​i​d​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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