Viewing data for Hippoglossus hippoglossus


Scientific name Hippoglossus hippoglossus
Common name Atlantic halibut
Maximum lifespan 90.00 years (Hippoglossus hippoglossus@AnAge)

Total mtDNA (size: 17546 bases) GC AT G C A T
Base content (bases) 8082 9464 5108 2974 4638 4826
Base content per 1 kb (bases) 461 539 291 169 264 275
Base content (%) 46.1% 53.9%
Total protein-coding genes (size: 11422 bases) GC AT G C A T
Base content (bases) 5349 6073 3491 1858 3152 2921
Base content per 1 kb (bases) 468 532 306 163 276 256
Base content (%) 46.8% 53.2%
D-loop (size: 1841 bases) GC AT G C A T
Base content (bases) 745 1096 519 226 527 569
Base content per 1 kb (bases) 405 595 282 123 286 309
Base content (%) 40.5% 59.5%
Total tRNA-coding genes (size: 1550 bases) GC AT G C A T
Base content (bases) 707 843 392 315 381 462
Base content per 1 kb (bases) 456 544 253 203 246 298
Base content (%) 45.6% 54.4%
Total rRNA-coding genes (size: 2664 bases) GC AT G C A T
Base content (bases) 1251 1413 685 566 564 849
Base content per 1 kb (bases) 470 530 257 212 212 319
Base content (%) 47.0% 53.0%
12S rRNA gene (size: 949 bases) GC AT G C A T
Base content (bases) 453 496 247 206 197 299
Base content per 1 kb (bases) 477 523 260 217 208 315
Base content (%) 47.7% 52.3%
16S rRNA gene (size: 1715 bases) GC AT G C A T
Base content (bases) 798 917 438 360 367 550
Base content per 1 kb (bases) 465 535 255 210 214 321
Base content (%) 46.5% 53.5%

ATP6 (size: 683 bases) GC AT G C A T
Base content (bases) 320 363 222 98 199 164
Base content per 1 kb (bases) 469 531 325 143 291 240
Base content (%) 46.9% 53.1%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 69 99 52 17 44 55
Base content per 1 kb (bases) 411 589 310 101 262 327
Base content (%) 41.1% 58.9%
COX1 (size: 1566 bases) GC AT G C A T
Base content (bases) 724 842 427 297 456 386
Base content per 1 kb (bases) 462 538 273 190 291 246
Base content (%) 46.2% 53.8%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 297 394 185 112 187 207
Base content per 1 kb (bases) 430 570 268 162 271 300
Base content (%) 43.0% 57.0%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 370 415 238 132 220 195
Base content per 1 kb (bases) 471 529 303 168 280 248
Base content (%) 47.1% 52.9%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 522 619 343 179 352 267
Base content per 1 kb (bases) 457 543 301 157 309 234
Base content (%) 45.7% 54.3%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 455 520 289 166 286 234
Base content per 1 kb (bases) 467 533 296 170 293 240
Base content (%) 46.7% 53.3%
ND2 (size: 1046 bases) GC AT G C A T
Base content (bases) 535 511 379 156 268 243
Base content per 1 kb (bases) 511 489 362 149 256 232
Base content (%) 51.1% 48.9%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 175 174 114 61 100 74
Base content per 1 kb (bases) 501 499 327 175 287 212
Base content (%) 50.1% 49.9%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 652 729 422 230 379 350
Base content per 1 kb (bases) 472 528 306 167 274 253
Base content (%) 47.2% 52.8%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 147 150 102 45 85 65
Base content per 1 kb (bases) 495 505 343 152 286 219
Base content (%) 49.5% 50.5%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 851 988 557 294 494 494
Base content per 1 kb (bases) 463 537 303 160 269 269
Base content (%) 46.3% 53.7%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 237 285 164 73 88 197
Base content per 1 kb (bases) 454 546 314 140 169 377
Base content (%) 45.4% 54.6%

ATP6 (size: 683 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 18 (7.96%)
Serine (Ser, S)
n = 11 (4.87%)
Threonine (Thr, T)
n = 19 (8.41%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 17 (7.52%)
Leucine (Leu, L)
n = 51 (22.57%)
Isoleucine (Ile, I)
n = 18 (7.96%)
Methionine (Met, M)
n = 9 (3.98%)
Proline (Pro, P)
n = 17 (7.52%)
Phenylalanine (Phe, F)
n = 14 (6.19%)
Tyrosine (Tyr, Y)
n = 4 (1.77%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 8 (3.54%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 4 (1.77%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 5 5 12 14 18 2 4 8 1 6 6 3 2 5 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 4 6 7 1 1 6 1 3 6 5 6 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 8 2 1 2 2 1 0 5 1 3 1 1 2 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 1 0 1 0 1 0 3 3 0 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 82 60 34
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 60 31 109
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 80 72 55
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWMIFLTVIPPKVLAHTYPNEPTSQSTQKPKTEPWNWPWY*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 5 (9.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 4 (7.27%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 2 (3.64%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 3 (5.45%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 1 1 0 0 0 1 3 3 0 3 0 0 0 2 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 3 0 0 0 0 0 2 7 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 1 1 0 0 0 1 1 1 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
8 15 17 16
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 20 15 15
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 17 23 13
COX1 (size: 1566 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.21%)
Alanine (Ala, A)
n = 47 (9.02%)
Serine (Ser, S)
n = 26 (4.99%)
Threonine (Thr, T)
n = 40 (7.68%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.68%)
Leucine (Leu, L)
n = 64 (12.28%)
Isoleucine (Ile, I)
n = 42 (8.06%)
Methionine (Met, M)
n = 25 (4.8%)
Proline (Pro, P)
n = 27 (5.18%)
Phenylalanine (Phe, F)
n = 42 (8.06%)
Tyrosine (Tyr, Y)
n = 19 (3.65%)
Tryptophan (Trp, W)
n = 17 (3.26%)
Aspartic acid (Asp, D)
n = 14 (2.69%)
Glutamic acid (Glu, E)
n = 11 (2.11%)
Asparagine (Asn, N)
n = 16 (3.07%)
Glutamine (Gln, Q)
n = 6 (1.15%)
Histidine (His, H)
n = 18 (3.45%)
Lysine (Lys, K)
n = 9 (1.73%)
Arginine (Arg, R)
n = 9 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
31 11 13 16 16 13 11 8 6 0 10 11 15 4 23 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
12 0 1 7 21 17 2 7 15 13 13 5 13 7 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 19 3 5 7 7 2 2 3 6 13 2 0 7 9 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 9 2 2 12 8 1 2 1 4 2 1 0 0 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
160 116 138 108
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
81 135 93 213
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
56 176 155 135
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 9 (3.93%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 19 (8.3%)
Leucine (Leu, L)
n = 27 (11.79%)
Isoleucine (Ile, I)
n = 24 (10.48%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 7 (3.06%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 14 (6.11%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 9 8 7 4 8 1 5 8 0 6 4 9 0 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 5 6 6 1 1 3 4 1 1 8 5 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 7 0 5 2 4 1 1 3 1 6 2 2 1 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 14 1 2 12 4 0 0 1 5 0 0 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 58 55 42
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 53 62 89
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 74 90 55
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (8.85%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 6 (2.31%)
Proline (Pro, P)
n = 14 (5.38%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 18 (6.92%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 5 4 9 5 8 1 9 7 1 5 8 3 0 7 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 0 5 8 8 0 1 12 4 6 2 6 6 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 11 0 5 1 4 0 0 3 3 6 0 1 0 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 5 3 0 5 3 0 0 1 3 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 68 54 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 69 53 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 101 87 58
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 30 (7.92%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 27 (7.12%)
Leucine (Leu, L)
n = 63 (16.62%)
Isoleucine (Ile, I)
n = 25 (6.6%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 31 (8.18%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 10 4 17 16 16 2 10 6 0 9 10 7 1 14 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 1 5 13 10 2 3 7 11 5 4 11 6 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 6 0 8 8 4 2 1 2 3 11 2 2 5 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 2 3 2 9 9 1 2 1 4 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 99 87 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 98 74 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 146 106 101
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 21 (6.48%)
Leucine (Leu, L)
n = 59 (18.21%)
Isoleucine (Ile, I)
n = 28 (8.64%)
Methionine (Met, M)
n = 8 (2.47%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 19 (5.86%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 8 4 11 14 17 7 6 6 1 3 6 7 5 6 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 9 13 11 1 2 7 3 6 8 6 6 4 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 6 1 6 4 6 2 1 2 4 7 1 4 4 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 9 2 1 3 7 0 2 0 4 2 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
88 92 78 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 96 57 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
41 101 99 84
ND2 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 41 (11.82%)
Serine (Ser, S)
n = 16 (4.61%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (3.75%)
Leucine (Leu, L)
n = 76 (21.9%)
Isoleucine (Ile, I)
n = 18 (5.19%)
Methionine (Met, M)
n = 12 (3.46%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 16 (4.61%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 15 (4.32%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 5 6 17 30 13 8 4 9 6 3 7 3 0 9 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 5 20 14 2 5 8 3 2 4 16 2 1 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 13 3 2 4 5 2 1 2 1 7 2 4 2 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 1 1 2 6 3 0 2 1 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 117 96 56
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 122 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
41 140 91 76
ND3 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 41 (11.82%)
Serine (Ser, S)
n = 16 (4.61%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (3.75%)
Leucine (Leu, L)
n = 76 (21.9%)
Isoleucine (Ile, I)
n = 18 (5.19%)
Methionine (Met, M)
n = 12 (3.46%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 16 (4.61%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 15 (4.32%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 5 6 17 30 13 8 4 9 6 3 7 3 0 9 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 5 20 14 2 5 8 3 2 4 16 2 1 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 13 3 2 4 5 2 1 2 1 7 2 4 2 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 1 1 2 6 3 0 2 1 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 117 96 56
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 122 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
41 140 91 76
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (5.66%)
Alanine (Ala, A)
n = 38 (8.28%)
Serine (Ser, S)
n = 37 (8.06%)
Threonine (Thr, T)
n = 40 (8.71%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 18 (3.92%)
Leucine (Leu, L)
n = 101 (22.0%)
Isoleucine (Ile, I)
n = 29 (6.32%)
Methionine (Met, M)
n = 24 (5.23%)
Proline (Pro, P)
n = 25 (5.45%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 19 (4.14%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 13 (2.83%)
Asparagine (Asn, N)
n = 9 (1.96%)
Glutamine (Gln, Q)
n = 9 (1.96%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 15 17 22 25 25 10 15 5 4 6 6 4 2 9 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 2 3 7 13 15 3 2 11 6 7 5 10 9 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 14 3 4 7 12 3 2 9 5 9 5 4 0 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 9 4 0 4 6 5 1 5 4 1 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 138 124 99
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
72 129 71 188
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
59 155 155 91
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 25 (25.51%)
Isoleucine (Ile, I)
n = 1 (1.02%)
Methionine (Met, M)
n = 4 (4.08%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 3 7 5 6 3 3 3 0 0 0 1 0 6 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 2 7 4 0 1 2 1 1 0 1 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 2 1 1 4 4 0 0 2 0 0 0 1 1 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 0 0 2 0 0 0 0 2 1 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
23 33 17 26
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 32 14 39
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 37 34 20
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 31 (5.07%)
Alanine (Ala, A)
n = 58 (9.48%)
Serine (Ser, S)
n = 41 (6.7%)
Threonine (Thr, T)
n = 59 (9.64%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 30 (4.9%)
Leucine (Leu, L)
n = 90 (14.71%)
Isoleucine (Ile, I)
n = 46 (7.52%)
Methionine (Met, M)
n = 30 (4.9%)
Proline (Pro, P)
n = 34 (5.56%)
Phenylalanine (Phe, F)
n = 42 (6.86%)
Tyrosine (Tyr, Y)
n = 11 (1.8%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 14 (2.29%)
Asparagine (Asn, N)
n = 30 (4.9%)
Glutamine (Gln, Q)
n = 17 (2.78%)
Histidine (His, H)
n = 16 (2.61%)
Lysine (Lys, K)
n = 18 (2.94%)
Arginine (Arg, R)
n = 13 (2.12%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 27 18 20 18 27 9 12 14 3 6 9 13 2 17 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
12 2 4 14 20 21 3 3 13 7 8 12 14 5 3 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 22 5 12 10 3 3 4 9 4 7 6 4 7 23 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 7 7 7 5 15 3 0 3 6 4 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
145 154 196 118
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 179 119 238
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
72 224 179 138
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 16 (9.25%)
Serine (Ser, S)
n = 16 (9.25%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 24 (13.87%)
Leucine (Leu, L)
n = 30 (17.34%)
Isoleucine (Ile, I)
n = 3 (1.73%)
Methionine (Met, M)
n = 8 (4.62%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 9 (5.2%)
Tryptophan (Trp, W)
n = 7 (4.05%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 0 3 3 0 2 1 16 0 0 9 4 8 3 8 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 7 1 5 3 5 2 4 14 1 1 1 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 6 3 2 1 3 1 4 5 6 8 1 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 5 2 0 0 0 0 0 3 1 0 0 0 1 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 16 21 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 38 20 75
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
50 19 47 58
Total protein-coding genes (size: 11443 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 246 (6.46%)
Alanine (Ala, A)
n = 347 (9.11%)
Serine (Ser, S)
n = 244 (6.4%)
Threonine (Thr, T)
n = 306 (8.03%)
Cysteine (Cys, C)
n = 23 (0.6%)
Valine (Val, V)
n = 232 (6.09%)
Leucine (Leu, L)
n = 652 (17.11%)
Isoleucine (Ile, I)
n = 261 (6.85%)
Methionine (Met, M)
n = 150 (3.94%)
Proline (Pro, P)
n = 225 (5.91%)
Phenylalanine (Phe, F)
n = 242 (6.35%)
Tyrosine (Tyr, Y)
n = 110 (2.89%)
Tryptophan (Trp, W)
n = 122 (3.2%)
Aspartic acid (Asp, D)
n = 76 (1.99%)
Glutamic acid (Glu, E)
n = 101 (2.65%)
Asparagine (Asn, N)
n = 112 (2.94%)
Glutamine (Gln, Q)
n = 94 (2.47%)
Histidine (His, H)
n = 107 (2.81%)
Lysine (Lys, K)
n = 76 (1.99%)
Arginine (Arg, R)
n = 79 (2.07%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
162 99 87 146 158 161 59 97 78 16 66 72 75 19 117 125
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
63 9 14 74 133 122 18 32 88 60 66 52 99 58 16 65
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
108 114 19 56 55 54 21 15 43 33 77 28 31 31 81 24
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
83 70 31 18 58 61 15 7 17 39 16 1 0 3 2 94
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1002 1029 964 816
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
529 1064 681 1537
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
420 1310 1174 907 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​i​p​p​o​g​l​o​s​s​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ h​i​p​p​o​g​l​o​s​s​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.