Viewing data for Pecari tajacu


Scientific name Pecari tajacu
Common name Collared peccary
Maximum lifespan 31.50 years (Pecari tajacu@AnAge)

Total mtDNA (size: 16839 bases) GC AT G C A T
Base content (bases) 6814 10025 4547 2267 4261 5764
Base content per 1 kb (bases) 405 595 270 135 253 342
Base content (%) 40.5% 59.5%
Total protein-coding genes (size: 11354 bases) GC AT G C A T
Base content (bases) 4628 6726 3263 1365 2908 3818
Base content per 1 kb (bases) 408 592 287 120 256 336
Base content (%) 40.8% 59.2%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1508 bases) GC AT G C A T
Base content (bases) 557 951 326 231 407 544
Base content per 1 kb (bases) 369 631 216 153 270 361
Base content (%) 36.9% 63.1%
Total rRNA-coding genes (size: 2525 bases) GC AT G C A T
Base content (bases) 1004 1521 573 431 561 960
Base content per 1 kb (bases) 398 602 227 171 222 380
Base content (%) 39.8% 60.2%
12S rRNA gene (size: 951 bases) GC AT G C A T
Base content (bases) 388 563 223 165 206 357
Base content per 1 kb (bases) 408 592 234 174 217 375
Base content (%) 40.8% 59.2%
16S rRNA gene (size: 1574 bases) GC AT G C A T
Base content (bases) 616 958 350 266 355 603
Base content per 1 kb (bases) 391 609 222 169 226 383
Base content (%) 39.1% 60.9%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 287 394 213 74 164 230
Base content per 1 kb (bases) 421 579 313 109 241 338
Base content (%) 42.1% 57.9%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 73 131 56 17 47 84
Base content per 1 kb (bases) 358 642 275 83 230 412
Base content (%) 35.8% 64.2%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 647 898 389 258 448 450
Base content per 1 kb (bases) 419 581 252 167 290 291
Base content (%) 41.9% 58.1%
COX2 (size: 696 bases) GC AT G C A T
Base content (bases) 277 419 183 94 178 241
Base content per 1 kb (bases) 398 602 263 135 256 346
Base content (%) 39.8% 60.2%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 357 427 237 120 207 220
Base content per 1 kb (bases) 455 545 302 153 264 281
Base content (%) 45.5% 54.5%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 493 647 349 144 287 360
Base content per 1 kb (bases) 432 568 306 126 252 316
Base content (%) 43.2% 56.8%
ND1 (size: 957 bases) GC AT G C A T
Base content (bases) 388 569 268 120 251 318
Base content per 1 kb (bases) 405 595 280 125 262 332
Base content (%) 40.5% 59.5%
ND2 (size: 1044 bases) GC AT G C A T
Base content (bases) 400 644 303 97 243 401
Base content per 1 kb (bases) 383 617 290 93 233 384
Base content (%) 38.3% 61.7%
ND3 (size: 347 bases) GC AT G C A T
Base content (bases) 143 204 104 39 89 115
Base content per 1 kb (bases) 412 588 300 112 256 331
Base content (%) 41.2% 58.8%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 556 822 409 147 356 466
Base content per 1 kb (bases) 403 597 297 107 258 338
Base content (%) 40.3% 59.7%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 115 182 79 36 85 97
Base content per 1 kb (bases) 387 613 266 121 286 327
Base content (%) 38.7% 61.3%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 724 1097 535 189 467 630
Base content per 1 kb (bases) 398 602 294 104 256 346
Base content (%) 39.8% 60.2%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 192 336 156 36 105 231
Base content per 1 kb (bases) 364 636 295 68 199 438
Base content (%) 36.4% 63.6%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.42%)
Alanine (Ala, A)
n = 17 (7.52%)
Serine (Ser, S)
n = 12 (5.31%)
Threonine (Thr, T)
n = 25 (11.06%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.42%)
Leucine (Leu, L)
n = 42 (18.58%)
Isoleucine (Ile, I)
n = 29 (12.83%)
Methionine (Met, M)
n = 13 (5.75%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 8 (3.54%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 13 (5.75%)
Glutamine (Gln, Q)
n = 10 (4.42%)
Histidine (His, H)
n = 7 (3.1%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 19 7 9 7 17 4 5 10 0 1 1 6 2 2 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 1 8 8 0 0 3 7 0 2 5 6 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 17 1 2 2 6 0 0 2 1 1 0 0 2 11 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 0 0 0 3 2 0 1 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 71 87 29
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
19 65 41 102
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 77 102 33
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWPITIMSMVLVLFIMFQLKTSSYTYPMSPELTNPKPKEQKAPWEMKWTKIYSPLSSPLQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.49%)
Serine (Ser, S)
n = 8 (11.94%)
Threonine (Thr, T)
n = 7 (10.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (2.99%)
Leucine (Leu, L)
n = 7 (10.45%)
Isoleucine (Ile, I)
n = 4 (5.97%)
Methionine (Met, M)
n = 6 (8.96%)
Proline (Pro, P)
n = 9 (13.43%)
Phenylalanine (Phe, F)
n = 2 (2.99%)
Tyrosine (Tyr, Y)
n = 3 (4.48%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 3 (4.48%)
Asparagine (Asn, N)
n = 1 (1.49%)
Glutamine (Gln, Q)
n = 4 (5.97%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 6 (8.96%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 2 5 2 0 4 0 1 4 0 0 1 1 0 1 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 0 0 0 0 0 0 3 1 5 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 4 1 0 1 4 1 0 2 1 2 1 0 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 1 1 0 6 0 0 0 0 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
7 19 26 16
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 23 19 21
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 14 39 10
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 40 (7.78%)
Serine (Ser, S)
n = 34 (6.61%)
Threonine (Thr, T)
n = 36 (7.0%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.2%)
Leucine (Leu, L)
n = 60 (11.67%)
Isoleucine (Ile, I)
n = 38 (7.39%)
Methionine (Met, M)
n = 31 (6.03%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 42 (8.17%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 11 (2.14%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 15 29 4 5 33 7 10 6 1 5 6 23 3 16 26
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 8 14 15 3 10 10 20 7 7 10 10 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 14 4 6 6 17 1 0 4 9 10 0 1 10 7 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 11 0 7 7 8 1 1 1 6 0 0 0 0 1 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
149 110 135 121
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 134 96 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 145 219 119
COX2 (size: 696 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.46%)
Alanine (Ala, A)
n = 8 (3.46%)
Serine (Ser, S)
n = 23 (9.96%)
Threonine (Thr, T)
n = 20 (8.66%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 11 (4.76%)
Leucine (Leu, L)
n = 35 (15.15%)
Isoleucine (Ile, I)
n = 19 (8.23%)
Methionine (Met, M)
n = 17 (7.36%)
Proline (Pro, P)
n = 13 (5.63%)
Phenylalanine (Phe, F)
n = 6 (2.6%)
Tyrosine (Tyr, Y)
n = 10 (4.33%)
Tryptophan (Trp, W)
n = 5 (2.16%)
Aspartic acid (Asp, D)
n = 11 (4.76%)
Glutamic acid (Glu, E)
n = 15 (6.49%)
Asparagine (Asn, N)
n = 4 (1.73%)
Glutamine (Gln, Q)
n = 6 (2.6%)
Histidine (His, H)
n = 7 (3.03%)
Lysine (Lys, K)
n = 5 (2.16%)
Arginine (Arg, R)
n = 6 (2.6%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 9 14 3 4 16 5 7 5 1 0 3 7 1 2 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 3 4 1 0 1 2 5 0 2 4 6 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 11 0 2 5 10 0 2 4 6 4 1 0 2 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 14 1 3 8 5 0 0 1 5 0 1 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 60 72 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
28 58 58 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 65 111 43
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 18 (6.92%)
Serine (Ser, S)
n = 22 (8.46%)
Threonine (Thr, T)
n = 20 (7.69%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 11 (4.23%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 9 8 5 4 16 5 2 6 1 1 5 6 1 7 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 0 7 11 0 3 10 6 1 0 5 5 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 12 0 6 4 8 0 0 4 4 7 0 2 1 5 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 0 1 3 2 1 0 1 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 70 58 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 67 56 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 100 106 41
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (5.8%)
Alanine (Ala, A)
n = 23 (6.07%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 27 (7.12%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 18 (4.75%)
Leucine (Leu, L)
n = 62 (16.36%)
Isoleucine (Ile, I)
n = 42 (11.08%)
Methionine (Met, M)
n = 13 (3.43%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 26 (6.86%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 27 11 3 16 36 5 2 4 2 0 4 11 3 11 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 3 11 9 0 1 3 16 2 1 3 18 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 16 0 1 7 12 0 0 3 3 11 0 0 4 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 0 2 9 9 0 0 2 6 0 1 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 109 114 77
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 93 77 161
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 147 169 49
ND1 (size: 957 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.77%)
Alanine (Ala, A)
n = 31 (9.75%)
Serine (Ser, S)
n = 22 (6.92%)
Threonine (Thr, T)
n = 25 (7.86%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 14 (4.4%)
Leucine (Leu, L)
n = 53 (16.67%)
Isoleucine (Ile, I)
n = 26 (8.18%)
Methionine (Met, M)
n = 22 (6.92%)
Proline (Pro, P)
n = 19 (5.97%)
Phenylalanine (Phe, F)
n = 20 (6.29%)
Tyrosine (Tyr, Y)
n = 11 (3.46%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 4 (1.26%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 12 (3.77%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 7 (2.2%)
Arginine (Arg, R)
n = 9 (2.83%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 18 21 4 6 35 1 6 5 1 2 2 8 2 8 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 4 8 18 1 0 3 8 1 2 4 12 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 15 1 3 8 8 0 0 3 8 3 0 1 5 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 9 2 1 3 7 0 1 1 6 1 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 84 95 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 94 56 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 90 167 48
ND2 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.32%)
Alanine (Ala, A)
n = 20 (5.76%)
Serine (Ser, S)
n = 27 (7.78%)
Threonine (Thr, T)
n = 40 (11.53%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 12 (3.46%)
Leucine (Leu, L)
n = 55 (15.85%)
Isoleucine (Ile, I)
n = 33 (9.51%)
Methionine (Met, M)
n = 38 (10.95%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 13 (3.75%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 15 (4.32%)
Glutamine (Gln, Q)
n = 11 (3.17%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 13 (3.75%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 23 36 2 9 36 2 6 10 1 1 0 11 0 5 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 1 10 9 0 0 5 9 1 2 5 13 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 27 0 1 8 14 0 1 3 1 6 1 0 2 13 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 1 0 2 13 0 0 0 2 1 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 90 143 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 103 60 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 110 198 30
ND3 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.32%)
Alanine (Ala, A)
n = 20 (5.76%)
Serine (Ser, S)
n = 27 (7.78%)
Threonine (Thr, T)
n = 40 (11.53%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 12 (3.46%)
Leucine (Leu, L)
n = 55 (15.85%)
Isoleucine (Ile, I)
n = 33 (9.51%)
Methionine (Met, M)
n = 38 (10.95%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 13 (3.75%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 15 (4.32%)
Glutamine (Gln, Q)
n = 11 (3.17%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 13 (3.75%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 23 36 2 9 36 2 6 10 1 1 0 11 0 5 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 1 10 9 0 0 5 9 1 2 5 13 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 27 0 1 8 14 0 1 3 1 6 1 0 2 13 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 1 0 2 13 0 0 0 2 1 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 90 143 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 103 60 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 110 198 30
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 29 (6.33%)
Serine (Ser, S)
n = 35 (7.64%)
Threonine (Thr, T)
n = 45 (9.83%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 15 (3.28%)
Leucine (Leu, L)
n = 96 (20.96%)
Isoleucine (Ile, I)
n = 37 (8.08%)
Methionine (Met, M)
n = 34 (7.42%)
Proline (Pro, P)
n = 21 (4.59%)
Phenylalanine (Phe, F)
n = 17 (3.71%)
Tyrosine (Tyr, Y)
n = 17 (3.71%)
Tryptophan (Trp, W)
n = 14 (3.06%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 24 (5.24%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 10 (2.18%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 24 27 11 13 59 5 5 10 0 0 2 12 1 8 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 2 5 13 11 0 0 8 10 0 2 8 10 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 25 0 5 10 10 1 0 9 9 8 0 3 6 18 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 7 1 1 3 12 0 1 1 8 0 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 139 161 85
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 121 85 199
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 149 220 71
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 6 (6.12%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 8 (8.16%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 6 (6.12%)
Methionine (Met, M)
n = 10 (10.2%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 4 9 1 2 14 0 4 2 0 0 3 3 2 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 0 4 5 0 1 1 2 0 1 0 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 5 0 0 4 2 0 0 0 2 2 0 1 1 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 1 0 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
24 23 29 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 23 18 50
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 33 50 12
ND5 (size: 1821 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (4.79%)
Alanine (Ala, A)
n = 37 (6.11%)
Serine (Ser, S)
n = 52 (8.58%)
Threonine (Thr, T)
n = 60 (9.9%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 19 (3.14%)
Leucine (Leu, L)
n = 86 (14.19%)
Isoleucine (Ile, I)
n = 53 (8.75%)
Methionine (Met, M)
n = 43 (7.1%)
Proline (Pro, P)
n = 28 (4.62%)
Phenylalanine (Phe, F)
n = 41 (6.77%)
Tyrosine (Tyr, Y)
n = 23 (3.8%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 10 (1.65%)
Glutamic acid (Glu, E)
n = 10 (1.65%)
Asparagine (Asn, N)
n = 32 (5.28%)
Glutamine (Gln, Q)
n = 18 (2.97%)
Histidine (His, H)
n = 16 (2.64%)
Lysine (Lys, K)
n = 23 (3.8%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 31 42 7 17 45 6 9 16 2 1 2 16 0 12 29
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 3 3 15 19 0 2 8 16 3 4 11 13 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 28 3 4 14 24 1 2 7 8 15 0 2 7 25 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 2 2 8 23 0 2 2 5 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
105 146 220 136
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
64 168 133 242
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 221 277 89
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.29%)
Alanine (Ala, A)
n = 6 (3.43%)
Serine (Ser, S)
n = 13 (7.43%)
Threonine (Thr, T)
n = 8 (4.57%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 25 (14.29%)
Leucine (Leu, L)
n = 16 (9.14%)
Isoleucine (Ile, I)
n = 17 (9.71%)
Methionine (Met, M)
n = 10 (5.71%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 15 (8.57%)
Tyrosine (Tyr, Y)
n = 10 (5.71%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 4 (2.29%)
Glutamic acid (Glu, E)
n = 10 (5.71%)
Asparagine (Asn, N)
n = 4 (2.29%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 3 (1.71%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 0 2 1 0 1 1 6 0 0 13 0 4 8 14 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 0 3 2 1 0 9 0 5 11 3 0 0 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 5 0 1 2 5 0 9 1 2 7 4 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 9 4 0 1 2 1 0 0 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 7 47 52
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 25 32 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
50 4 26 96
Total protein-coding genes (size: 11422 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 213 (5.6%)
Alanine (Ala, A)
n = 248 (6.52%)
Serine (Ser, S)
n = 287 (7.54%)
Threonine (Thr, T)
n = 328 (8.62%)
Cysteine (Cys, C)
n = 24 (0.63%)
Valine (Val, V)
n = 188 (4.94%)
Leucine (Leu, L)
n = 595 (15.64%)
Isoleucine (Ile, I)
n = 325 (8.54%)
Methionine (Met, M)
n = 253 (6.65%)
Proline (Pro, P)
n = 195 (5.12%)
Phenylalanine (Phe, F)
n = 224 (5.89%)
Tyrosine (Tyr, Y)
n = 134 (3.52%)
Tryptophan (Trp, W)
n = 105 (2.76%)
Aspartic acid (Asp, D)
n = 68 (1.79%)
Glutamic acid (Glu, E)
n = 97 (2.55%)
Asparagine (Asn, N)
n = 158 (4.15%)
Glutamine (Gln, Q)
n = 90 (2.37%)
Histidine (His, H)
n = 100 (2.63%)
Lysine (Lys, K)
n = 99 (2.6%)
Arginine (Arg, R)
n = 65 (1.71%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
141 184 216 53 91 327 42 65 80 10 24 29 112 23 90 134
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
37 8 16 33 100 111 4 27 53 106 27 29 58 102 6 46
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
93 179 10 36 72 120 6 11 42 61 73 5 17 44 114 22
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
78 80 17 23 45 93 6 6 11 46 2 2 0 5 3 100
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
814 963 1218 811
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
462 1005 754 1585
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
215 1193 1744 654 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​e​c​a​r​i​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ t​a​j​a​c​u​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.