Viewing data for Lepus europaeus
| Scientific name | Lepus europaeus |
| Common name | European hare |
| Maximum lifespan | 10.70 years (Lepus europaeus@AnAge) |
| Total mtDNA (size: 17734 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6868 | 10866 | 4510 | 2358 | 5283 | 5583 |
| Base content per 1 kb (bases) | 387 | 613 | 254 | 133 | 298 | 315 |
| Base content (%) | 38.7% | 61.3% | ||||
| Total protein-coding genes (size: 11336 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4378 | 6958 | 2994 | 1384 | 3521 | 3437 |
| Base content per 1 kb (bases) | 386 | 614 | 264 | 122 | 311 | 303 |
| Base content (%) | 38.6% | 61.4% | ||||
| D-loop (size: 2295 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 917 | 1378 | 647 | 270 | 672 | 706 |
| Base content per 1 kb (bases) | 400 | 600 | 282 | 118 | 293 | 308 |
| Base content (%) | 40.0% | 60.0% | ||||
| Total tRNA-coding genes (size: 1500 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 559 | 941 | 315 | 244 | 434 | 507 |
| Base content per 1 kb (bases) | 373 | 627 | 210 | 163 | 289 | 338 |
| Base content (%) | 37.3% | 62.7% | ||||
| Total rRNA-coding genes (size: 2535 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 988 | 1547 | 536 | 452 | 638 | 909 |
| Base content per 1 kb (bases) | 390 | 610 | 211 | 178 | 252 | 359 |
| Base content (%) | 39.0% | 61.0% | ||||
| 12S rRNA gene (size: 956 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 384 | 572 | 206 | 178 | 232 | 340 |
| Base content per 1 kb (bases) | 402 | 598 | 215 | 186 | 243 | 356 |
| Base content (%) | 40.2% | 59.8% | ||||
| 16S rRNA gene (size: 1579 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 604 | 975 | 330 | 274 | 406 | 569 |
| Base content per 1 kb (bases) | 383 | 617 | 209 | 174 | 257 | 360 |
| Base content (%) | 38.3% | 61.7% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 263 | 418 | 187 | 76 | 205 | 213 |
| Base content per 1 kb (bases) | 386 | 614 | 275 | 112 | 301 | 313 |
| Base content (%) | 38.6% | 61.4% | ||||
| ATP8 (size: 204 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 68 | 136 | 55 | 13 | 63 | 73 |
| Base content per 1 kb (bases) | 333 | 667 | 270 | 64 | 309 | 358 |
| Base content (%) | 33.3% | 66.7% | ||||
| COX1 (size: 1542 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 630 | 912 | 368 | 262 | 496 | 416 |
| Base content per 1 kb (bases) | 409 | 591 | 239 | 170 | 322 | 270 |
| Base content (%) | 40.9% | 59.1% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 270 | 414 | 172 | 98 | 213 | 201 |
| Base content per 1 kb (bases) | 395 | 605 | 251 | 143 | 311 | 294 |
| Base content (%) | 39.5% | 60.5% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 324 | 460 | 205 | 119 | 248 | 212 |
| Base content per 1 kb (bases) | 413 | 587 | 261 | 152 | 316 | 270 |
| Base content (%) | 41.3% | 58.7% | ||||
| CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 478 | 662 | 331 | 147 | 346 | 316 |
| Base content per 1 kb (bases) | 419 | 581 | 290 | 129 | 304 | 277 |
| Base content (%) | 41.9% | 58.1% | ||||
| ND1 (size: 957 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 383 | 574 | 268 | 115 | 291 | 283 |
| Base content per 1 kb (bases) | 400 | 600 | 280 | 120 | 304 | 296 |
| Base content (%) | 40.0% | 60.0% | ||||
| ND2 (size: 1044 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 369 | 675 | 272 | 97 | 312 | 363 |
| Base content per 1 kb (bases) | 353 | 647 | 261 | 93 | 299 | 348 |
| Base content (%) | 35.3% | 64.7% | ||||
| ND3 (size: 346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 132 | 214 | 87 | 45 | 110 | 104 |
| Base content per 1 kb (bases) | 382 | 618 | 251 | 130 | 318 | 301 |
| Base content (%) | 38.2% | 61.8% | ||||
| ND4 (size: 1375 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 511 | 864 | 366 | 145 | 438 | 426 |
| Base content per 1 kb (bases) | 372 | 628 | 266 | 105 | 319 | 310 |
| Base content (%) | 37.2% | 62.8% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 102 | 195 | 65 | 37 | 115 | 80 |
| Base content per 1 kb (bases) | 343 | 657 | 219 | 125 | 387 | 269 |
| Base content (%) | 34.3% | 65.7% | ||||
| ND5 (size: 1812 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 671 | 1141 | 475 | 196 | 582 | 559 |
| Base content per 1 kb (bases) | 370 | 630 | 262 | 108 | 321 | 308 |
| Base content (%) | 37.0% | 63.0% | ||||
| ND6 (size: 525 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 193 | 332 | 156 | 37 | 119 | 213 |
| Base content per 1 kb (bases) | 368 | 632 | 297 | 70 | 227 | 406 |
| Base content (%) | 36.8% | 63.2% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%) 
Alanine (Ala, A)
n = 18 (7.96%) 
Serine (Ser, S)
n = 13 (5.75%) 
Threonine (Thr, T)
n = 22 (9.73%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 9 (3.98%) 
Leucine (Leu, L)
n = 42 (18.58%) 
Isoleucine (Ile, I)
n = 28 (12.39%) 
Methionine (Met, M)
n = 15 (6.64%) 
Proline (Pro, P)
n = 15 (6.64%) 
Phenylalanine (Phe, F)
n = 12 (5.31%) 
Tyrosine (Tyr, Y)
n = 3 (1.33%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 3 (1.33%) 
Asparagine (Asn, N)
n = 8 (3.54%) 
Glutamine (Gln, Q)
n = 8 (3.54%) 
Histidine (His, H)
n = 6 (2.65%) 
Lysine (Lys, K)
n = 4 (1.77%) 
Arginine (Arg, R)
n = 5 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 18 | 10 | 12 | 6 | 5 | 21 | 1 | 7 | 8 | 0 | 1 | 1 | 6 | 1 | 9 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 5 | 8 | 5 | 0 | 1 | 4 | 4 | 2 | 4 | 4 | 7 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 11 | 0 | 1 | 3 | 6 | 0 | 2 | 1 | 2 | 1 | 1 | 2 | 3 | 5 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 3 | 0 | 1 | 0 | 3 | 1 | 1 | 0 | 3 | 1 | 0 | 0 | 1 | 0 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 42 | 67 | 80 | 38 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 22 | 65 | 34 | 106 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 12 | 55 | 99 | 61 | ||||||||||||
| ATP8 (size: 204 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLDTSTWLVTIIAMILTLFILIQLKFHKYSYPLSPAPKTFKSTSFPTPWETKWTKIYSPLLLPQQ* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (2.99%)
Serine (Ser, S)
n = 6 (8.96%)
Threonine (Thr, T)
n = 9 (13.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.49%)
Leucine (Leu, L)
n = 10 (14.93%)
Isoleucine (Ile, I)
n = 6 (8.96%)
Methionine (Met, M)
n = 2 (2.99%)
Proline (Pro, P)
n = 8 (11.94%)
Phenylalanine (Phe, F)
n = 4 (5.97%)
Tyrosine (Tyr, Y)
n = 3 (4.48%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 1 (1.49%)
Asparagine (Asn, N)
n = 0 (0%)
Glutamine (Gln, Q)
n = 4 (5.97%)
Histidine (His, H)
n = 1 (1.49%)
Lysine (Lys, K)
n = 6 (8.96%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 4 | 1 | 4 | 0 | 1 | 1 | 4 | 4 | 0 | 0 | 0 | 1 | 0 | 4 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 5 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 5 | 1 | 4 | 1 | 0 | 0 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 0 | 1 | 0 | 1 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 5 | 19 | 24 | 20 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 4 | 24 | 17 | 23 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 12 | 32 | 20 | ||||||||||||
| COX1 (size: 1542 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.16%)
Alanine (Ala, A)
n = 43 (8.38%)
Serine (Ser, S)
n = 29 (5.65%)
Threonine (Thr, T)
n = 38 (7.41%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 38 (7.41%)
Leucine (Leu, L)
n = 59 (11.5%)
Isoleucine (Ile, I)
n = 36 (7.02%)
Methionine (Met, M)
n = 32 (6.24%)
Proline (Pro, P)
n = 28 (5.46%)
Phenylalanine (Phe, F)
n = 42 (8.19%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 11 (2.14%)
Asparagine (Asn, N)
n = 16 (3.12%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.51%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 25 | 11 | 25 | 15 | 8 | 15 | 2 | 18 | 6 | 1 | 13 | 3 | 20 | 2 | 17 | 25 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 1 | 0 | 16 | 17 | 8 | 2 | 10 | 7 | 22 | 8 | 11 | 6 | 11 | 0 | 14 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 14 | 1 | 12 | 4 | 10 | 0 | 2 | 1 | 7 | 12 | 2 | 1 | 9 | 7 | 9 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 7 | 4 | 2 | 13 | 9 | 0 | 1 | 0 | 5 | 2 | 0 | 0 | 1 | 0 | 15 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 154 | 101 | 134 | 125 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 76 | 135 | 96 | 207 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 32 | 132 | 186 | 164 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 8 (3.52%)
Serine (Ser, S)
n = 23 (10.13%)
Threonine (Thr, T)
n = 15 (6.61%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 11 (4.85%)
Leucine (Leu, L)
n = 33 (14.54%)
Isoleucine (Ile, I)
n = 21 (9.25%)
Methionine (Met, M)
n = 15 (6.61%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 12 (5.29%)
Glutamic acid (Glu, E)
n = 13 (5.73%)
Asparagine (Asn, N)
n = 6 (2.64%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 9 | 10 | 11 | 6 | 5 | 4 | 7 | 6 | 0 | 5 | 2 | 4 | 0 | 4 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 2 | 0 | 5 | 2 | 1 | 0 | 1 | 4 | 3 | 0 | 5 | 3 | 6 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 8 | 3 | 5 | 7 | 5 | 0 | 2 | 4 | 7 | 2 | 1 | 0 | 2 | 4 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 8 | 5 | 5 | 7 | 4 | 0 | 2 | 0 | 4 | 0 | 0 | 0 | 0 | 1 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 52 | 60 | 67 | 49 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 27 | 54 | 59 | 88 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 19 | 58 | 75 | 76 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 16 (6.15%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 7 (2.69%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 3 | 7 | 12 | 3 | 10 | 1 | 7 | 6 | 2 | 7 | 4 | 4 | 0 | 13 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 2 | 3 | 8 | 5 | 0 | 6 | 7 | 6 | 2 | 4 | 4 | 4 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 10 | 1 | 1 | 2 | 14 | 0 | 2 | 2 | 7 | 4 | 2 | 1 | 1 | 6 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 8 | 0 | 3 | 0 | 3 | 0 | 1 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 63 | 67 | 59 | 72 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 67 | 56 | 94 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 12 | 71 | 97 | 81 | ||||||||||||
| CYTB (size: 1140 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 25 (6.6%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 23 (6.07%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 18 (4.75%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 42 (11.08%)
Methionine (Met, M)
n = 16 (4.22%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 25 (6.6%)
Tyrosine (Tyr, Y)
n = 16 (4.22%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 21 | 21 | 14 | 13 | 14 | 23 | 1 | 6 | 5 | 1 | 6 | 6 | 5 | 1 | 10 | 15 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 3 | 6 | 9 | 9 | 1 | 3 | 9 | 10 | 2 | 8 | 8 | 7 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 10 | 1 | 5 | 6 | 11 | 0 | 0 | 3 | 5 | 11 | 0 | 1 | 6 | 10 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 4 | 2 | 4 | 6 | 10 | 0 | 5 | 1 | 2 | 0 | 0 | 1 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 83 | 101 | 111 | 85 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 51 | 93 | 77 | 159 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 137 | 128 | 102 | ||||||||||||
| ND1 (size: 957 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.09%)
Alanine (Ala, A)
n = 27 (8.49%)
Serine (Ser, S)
n = 25 (7.86%)
Threonine (Thr, T)
n = 23 (7.23%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 11 (3.46%)
Leucine (Leu, L)
n = 59 (18.55%)
Isoleucine (Ile, I)
n = 26 (8.18%)
Methionine (Met, M)
n = 19 (5.97%)
Proline (Pro, P)
n = 21 (6.6%)
Phenylalanine (Phe, F)
n = 22 (6.92%)
Tyrosine (Tyr, Y)
n = 11 (3.46%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 11 (3.46%)
Glutamine (Gln, Q)
n = 5 (1.57%)
Histidine (His, H)
n = 5 (1.57%)
Lysine (Lys, K)
n = 7 (2.2%)
Arginine (Arg, R)
n = 8 (2.52%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 13 | 14 | 12 | 9 | 29 | 1 | 8 | 4 | 1 | 2 | 5 | 4 | 0 | 14 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 1 | 4 | 9 | 14 | 0 | 3 | 6 | 3 | 1 | 5 | 8 | 8 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 9 | 1 | 4 | 2 | 13 | 1 | 3 | 2 | 5 | 6 | 0 | 0 | 3 | 8 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 10 | 1 | 3 | 0 | 6 | 1 | 1 | 0 | 7 | 0 | 0 | 0 | 0 | 1 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 65 | 90 | 91 | 73 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 37 | 91 | 54 | 137 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 87 | 138 | 81 | ||||||||||||
| ND2 (size: 1044 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.32%)
Alanine (Ala, A)
n = 19 (5.48%)
Serine (Ser, S)
n = 25 (7.2%)
Threonine (Thr, T)
n = 35 (10.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 55 (15.85%)
Isoleucine (Ile, I)
n = 44 (12.68%)
Methionine (Met, M)
n = 35 (10.09%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 18 (5.19%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 17 (4.9%)
Glutamine (Gln, Q)
n = 12 (3.46%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 26 | 18 | 31 | 7 | 7 | 28 | 2 | 11 | 10 | 2 | 1 | 3 | 4 | 0 | 11 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 4 | 10 | 4 | 1 | 2 | 6 | 7 | 0 | 7 | 4 | 9 | 0 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 19 | 1 | 4 | 7 | 11 | 1 | 0 | 2 | 4 | 2 | 1 | 0 | 4 | 13 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 5 | 0 | 0 | 2 | 8 | 4 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 49 | 85 | 145 | 69 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 31 | 97 | 60 | 160 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 17 | 90 | 158 | 83 | ||||||||||||
| ND3 (size: 1044 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.32%)
Alanine (Ala, A)
n = 19 (5.48%)
Serine (Ser, S)
n = 25 (7.2%)
Threonine (Thr, T)
n = 35 (10.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 55 (15.85%)
Isoleucine (Ile, I)
n = 44 (12.68%)
Methionine (Met, M)
n = 35 (10.09%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 18 (5.19%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 17 (4.9%)
Glutamine (Gln, Q)
n = 12 (3.46%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 26 | 18 | 31 | 7 | 7 | 28 | 2 | 11 | 10 | 2 | 1 | 3 | 4 | 0 | 11 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 4 | 10 | 4 | 1 | 2 | 6 | 7 | 0 | 7 | 4 | 9 | 0 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 19 | 1 | 4 | 7 | 11 | 1 | 0 | 2 | 4 | 2 | 1 | 0 | 4 | 13 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 5 | 0 | 0 | 2 | 8 | 4 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 49 | 85 | 145 | 69 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 31 | 97 | 60 | 160 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 17 | 90 | 158 | 83 | ||||||||||||
| ND4 (size: 1375 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.72%)
Alanine (Ala, A)
n = 30 (6.56%)
Serine (Ser, S)
n = 42 (9.19%)
Threonine (Thr, T)
n = 42 (9.19%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 17 (3.72%)
Leucine (Leu, L)
n = 99 (21.66%)
Isoleucine (Ile, I)
n = 38 (8.32%)
Methionine (Met, M)
n = 30 (6.56%)
Proline (Pro, P)
n = 20 (4.38%)
Phenylalanine (Phe, F)
n = 17 (3.72%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 10 (2.19%)
Asparagine (Asn, N)
n = 22 (4.81%)
Glutamine (Gln, Q)
n = 10 (2.19%)
Histidine (His, H)
n = 9 (1.97%)
Lysine (Lys, K)
n = 11 (2.41%)
Arginine (Arg, R)
n = 11 (2.41%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 23 | 15 | 28 | 25 | 17 | 31 | 4 | 21 | 9 | 1 | 7 | 5 | 5 | 0 | 12 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 2 | 5 | 10 | 14 | 1 | 4 | 3 | 8 | 2 | 5 | 7 | 7 | 1 | 13 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 20 | 0 | 10 | 10 | 11 | 1 | 3 | 7 | 7 | 7 | 0 | 1 | 13 | 9 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 9 | 1 | 1 | 2 | 11 | 0 | 2 | 2 | 7 | 0 | 0 | 0 | 0 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 77 | 127 | 153 | 101 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 54 | 124 | 79 | 201 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 14 | 115 | 194 | 135 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 8 (8.16%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 2 | 6 | 4 | 2 | 8 | 1 | 6 | 2 | 0 | 2 | 2 | 2 | 0 | 7 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 2 | 0 | 5 | 2 | 1 | 0 | 2 | 1 | 1 | 1 | 0 | 1 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 3 | 0 | 4 | 0 | 3 | 0 | 0 | 0 | 1 | 3 | 0 | 1 | 4 | 1 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 21 | 22 | 26 | 30 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 8 | 21 | 17 | 53 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 22 | 37 | 32 | ||||||||||||
| ND5 (size: 1812 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.48%)
Alanine (Ala, A)
n = 44 (7.3%)
Serine (Ser, S)
n = 57 (9.45%)
Threonine (Thr, T)
n = 49 (8.13%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 19 (3.15%)
Leucine (Leu, L)
n = 87 (14.43%)
Isoleucine (Ile, I)
n = 67 (11.11%)
Methionine (Met, M)
n = 33 (5.47%)
Proline (Pro, P)
n = 23 (3.81%)
Phenylalanine (Phe, F)
n = 44 (7.3%)
Tyrosine (Tyr, Y)
n = 17 (2.82%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 11 (1.82%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 37 (6.14%)
Glutamine (Gln, Q)
n = 19 (3.15%)
Histidine (His, H)
n = 14 (2.32%)
Lysine (Lys, K)
n = 20 (3.32%)
Arginine (Arg, R)
n = 8 (1.33%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 40 | 27 | 27 | 23 | 18 | 29 | 1 | 14 | 17 | 2 | 2 | 6 | 11 | 0 | 28 | 16 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 2 | 2 | 16 | 14 | 14 | 0 | 5 | 8 | 13 | 1 | 8 | 8 | 7 | 0 | 11 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 18 | 18 | 2 | 11 | 12 | 22 | 1 | 6 | 5 | 10 | 7 | 1 | 2 | 16 | 21 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 7 | 4 | 8 | 3 | 18 | 2 | 2 | 3 | 3 | 0 | 0 | 0 | 1 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 112 | 135 | 217 | 140 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 62 | 162 | 130 | 250 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 178 | 212 | 192 | ||||||||||||
| ND6 (size: 525 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.94%)
Alanine (Ala, A)
n = 8 (4.6%)
Serine (Ser, S)
n = 15 (8.62%)
Threonine (Thr, T)
n = 6 (3.45%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 24 (13.79%)
Leucine (Leu, L)
n = 20 (11.49%)
Isoleucine (Ile, I)
n = 13 (7.47%)
Methionine (Met, M)
n = 14 (8.05%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 13 (7.47%)
Tyrosine (Tyr, Y)
n = 7 (4.02%)
Tryptophan (Trp, W)
n = 4 (2.3%)
Aspartic acid (Asp, D)
n = 4 (2.3%)
Glutamic acid (Glu, E)
n = 10 (5.75%)
Asparagine (Asn, N)
n = 2 (1.15%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.15%)
Arginine (Arg, R)
n = 2 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 0 | 9 | 3 | 0 | 0 | 0 | 12 | 0 | 0 | 9 | 1 | 6 | 8 | 12 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 0 | 2 | 0 | 4 | 2 | 11 | 1 | 3 | 11 | 1 | 0 | 2 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 2 | 0 | 4 | 0 | 1 | 1 | 9 | 0 | 6 | 1 | 1 | 5 | 2 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 4 | 6 | 2 | 2 | 0 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 72 | 8 | 46 | 49 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 42 | 23 | 26 | 84 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 42 | 6 | 47 | 80 | ||||||||||||
| Total protein-coding genes (size: 11391 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 217 (5.72%)
Alanine (Ala, A)
n = 257 (6.77%)
Serine (Ser, S)
n = 294 (7.75%)
Threonine (Thr, T)
n = 292 (7.69%)
Cysteine (Cys, C)
n = 22 (0.58%)
Valine (Val, V)
n = 182 (4.8%)
Leucine (Leu, L)
n = 604 (15.92%)
Isoleucine (Ile, I)
n = 356 (9.38%)
Methionine (Met, M)
n = 234 (6.17%)
Proline (Pro, P)
n = 195 (5.14%)
Phenylalanine (Phe, F)
n = 243 (6.4%)
Tyrosine (Tyr, Y)
n = 123 (3.24%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 68 (1.79%)
Glutamic acid (Glu, E)
n = 97 (2.56%)
Asparagine (Asn, N)
n = 153 (4.03%)
Glutamine (Gln, Q)
n = 90 (2.37%)
Histidine (His, H)
n = 97 (2.56%)
Lysine (Lys, K)
n = 91 (2.4%)
Arginine (Arg, R)
n = 67 (1.77%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 216 | 140 | 188 | 142 | 92 | 210 | 21 | 125 | 79 | 11 | 56 | 39 | 73 | 14 | 146 | 97 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 46 | 9 | 13 | 68 | 95 | 86 | 8 | 46 | 58 | 82 | 31 | 61 | 57 | 76 | 1 | 80 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 70 | 131 | 11 | 65 | 55 | 111 | 5 | 29 | 29 | 63 | 60 | 9 | 14 | 67 | 86 | 37 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 60 | 71 | 26 | 31 | 37 | 81 | 10 | 18 | 6 | 39 | 4 | 0 | 1 | 5 | 4 | 95 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 821 | 914 | 1185 | 876 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 469 | 980 | 728 | 1619 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 216 | 994 | 1452 | 1134 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​L​e​p​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ e​u​r​o​p​a​e​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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