Scientific name | Capra falconeri |
Common name | Markhor |
Maximum lifespan | 19.10 years (Capra falconeri@AnAge) |
Total mtDNA (size: 16640 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 6524 | 10108 | 4328 | 2196 | 4550 | 5558 |
Base content per 1 kb (bases) | 392 | 607 | 260 | 132 | 273 | 334 |
Base content (%) | 39.2% | 60.7% |
Total protein-coding genes (size: 11335 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4486 | 6841 | 3152 | 1334 | 3147 | 3694 |
Base content per 1 kb (bases) | 396 | 604 | 278 | 118 | 278 | 326 |
Base content (%) | 39.6% | 60.4% |
D-loop (size: 1027 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 410 | 617 | 253 | 157 | 294 | 323 |
Base content per 1 kb (bases) | 399 | 601 | 246 | 153 | 286 | 315 |
Base content (%) | 39.9% | 60.1% |
Total tRNA-coding genes (size: 1511 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 535 | 976 | 311 | 224 | 435 | 541 |
Base content per 1 kb (bases) | 354 | 646 | 206 | 148 | 288 | 358 |
Base content (%) | 35.4% | 64.6% |
Total rRNA-coding genes (size: 2528 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 994 | 1534 | 546 | 448 | 601 | 933 |
Base content per 1 kb (bases) | 393 | 607 | 216 | 177 | 238 | 369 |
Base content (%) | 39.3% | 60.7% |
12S rRNA gene (size: 956 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 394 | 562 | 221 | 173 | 213 | 349 |
Base content per 1 kb (bases) | 412 | 588 | 231 | 181 | 223 | 365 |
Base content (%) | 41.2% | 58.8% |
16S rRNA gene (size: 1572 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 600 | 972 | 325 | 275 | 388 | 584 |
Base content per 1 kb (bases) | 382 | 618 | 207 | 175 | 247 | 372 |
Base content (%) | 38.2% | 61.8% |
ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 272 | 404 | 200 | 72 | 186 | 218 |
Base content per 1 kb (bases) | 399 | 593 | 294 | 106 | 273 | 320 |
Base content (%) | 39.9% | 59.3% |
ATP8 (size: 198 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 65 | 133 | 50 | 15 | 56 | 77 |
Base content per 1 kb (bases) | 328 | 672 | 253 | 76 | 283 | 389 |
Base content (%) | 32.8% | 67.2% |
COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 648 | 896 | 395 | 253 | 451 | 445 |
Base content per 1 kb (bases) | 419 | 580 | 256 | 164 | 292 | 288 |
Base content (%) | 41.9% | 58.0% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 256 | 428 | 162 | 94 | 190 | 238 |
Base content per 1 kb (bases) | 374 | 626 | 237 | 137 | 278 | 348 |
Base content (%) | 37.4% | 62.6% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 336 | 448 | 219 | 117 | 242 | 206 |
Base content per 1 kb (bases) | 429 | 571 | 279 | 149 | 309 | 263 |
Base content (%) | 42.9% | 57.1% |
CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 471 | 668 | 323 | 148 | 305 | 363 |
Base content per 1 kb (bases) | 413 | 586 | 283 | 130 | 268 | 318 |
Base content (%) | 41.3% | 58.6% |
ND1 (size: 956 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 383 | 572 | 277 | 106 | 264 | 308 |
Base content per 1 kb (bases) | 401 | 598 | 290 | 111 | 276 | 322 |
Base content (%) | 40.1% | 59.8% |
ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 371 | 671 | 292 | 79 | 284 | 387 |
Base content per 1 kb (bases) | 356 | 644 | 280 | 76 | 273 | 371 |
Base content (%) | 35.6% | 64.4% |
ND3 (size: 346 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 138 | 208 | 99 | 39 | 100 | 108 |
Base content per 1 kb (bases) | 399 | 601 | 286 | 113 | 289 | 312 |
Base content (%) | 39.9% | 60.1% |
ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 549 | 829 | 400 | 149 | 391 | 438 |
Base content per 1 kb (bases) | 398 | 602 | 290 | 108 | 284 | 318 |
Base content (%) | 39.8% | 60.2% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 116 | 181 | 78 | 38 | 90 | 91 |
Base content per 1 kb (bases) | 391 | 609 | 263 | 128 | 303 | 306 |
Base content (%) | 39.1% | 60.9% |
ND5 (size: 1821 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 716 | 1105 | 519 | 197 | 497 | 608 |
Base content per 1 kb (bases) | 393 | 607 | 285 | 108 | 273 | 334 |
Base content (%) | 39.3% | 60.7% |
ND6 (size: 528 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 184 | 344 | 151 | 33 | 114 | 230 |
Base content per 1 kb (bases) | 348 | 652 | 286 | 63 | 216 | 436 |
Base content (%) | 34.8% | 65.2% |
ATP6 (size: 681 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
17 | 8 | 7 | 5 | 10 | 15 | 3 | 11 | 8 | 1 | 1 | 1 | 6 | 0 | 9 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 0 | 1 | 8 | 8 | 0 | 1 | 3 | 6 | 1 | 2 | 6 | 6 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 14 | 0 | 3 | 1 | 5 | 0 | 0 | 4 | 0 | 2 | 1 | 0 | 1 | 10 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 3 | 0 | 0 | 1 | 4 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
40 | 66 | 78 | 38 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
22 | 63 | 37 | 100 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
10 | 68 | 98 | 46 |
ATP8 (size: 198 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLDTSTWFTTILSMFLALFIIFQLKISKYNFYHNPESAAKVLKHITPWETKWTKIYLPLLLPL* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
3 | 3 | 1 | 1 | 1 | 6 | 0 | 3 | 2 | 0 | 0 | 0 | 1 | 0 | 3 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 2 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 5 | 1 | 0 | 0 | 3 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 2 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 2 | 0 | 0 | 1 | 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
7 | 17 | 23 | 19 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
3 | 19 | 19 | 25 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
5 | 14 | 35 | 12 |
COX1 (size: 1545 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
22 | 18 | 26 | 10 | 5 | 30 | 3 | 8 | 5 | 1 | 6 | 6 | 18 | 5 | 20 | 22 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
7 | 0 | 1 | 8 | 15 | 17 | 0 | 6 | 10 | 27 | 4 | 9 | 10 | 8 | 1 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
10 | 18 | 0 | 8 | 5 | 13 | 1 | 1 | 2 | 6 | 13 | 1 | 3 | 8 | 11 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
13 | 7 | 2 | 5 | 11 | 9 | 0 | 0 | 2 | 4 | 2 | 0 | 0 | 1 | 0 | 16 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
147 | 107 | 142 | 118 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
76 | 133 | 96 | 209 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
30 | 154 | 207 | 123 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 7 | 12 | 3 | 2 | 15 | 3 | 10 | 6 | 0 | 7 | 1 | 5 | 0 | 3 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 2 | 1 | 1 | 6 | 0 | 3 | 1 | 4 | 0 | 2 | 4 | 7 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 10 | 1 | 4 | 3 | 8 | 1 | 1 | 4 | 6 | 4 | 0 | 0 | 1 | 4 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 12 | 3 | 3 | 7 | 6 | 0 | 2 | 0 | 4 | 0 | 0 | 0 | 0 | 1 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
54 | 55 | 68 | 51 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 55 | 60 | 87 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
14 | 52 | 110 | 52 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
8 | 6 | 5 | 10 | 4 | 12 | 0 | 7 | 6 | 1 | 4 | 5 | 5 | 2 | 12 | 12 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 2 | 5 | 7 | 3 | 0 | 5 | 7 | 7 | 1 | 1 | 5 | 6 | 0 | 4 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 11 | 0 | 2 | 6 | 6 | 1 | 1 | 4 | 7 | 4 | 0 | 1 | 4 | 2 | 6 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 8 | 0 | 1 | 3 | 2 | 0 | 2 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
63 | 67 | 59 | 72 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
44 | 65 | 55 | 97 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
10 | 87 | 92 | 72 |
CYTB (size: 1140 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
19 | 22 | 19 | 5 | 15 | 26 | 3 | 6 | 4 | 2 | 1 | 8 | 8 | 1 | 7 | 18 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 1 | 3 | 2 | 6 | 15 | 1 | 0 | 6 | 16 | 1 | 5 | 4 | 14 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 17 | 0 | 3 | 4 | 10 | 1 | 0 | 3 | 8 | 7 | 2 | 0 | 6 | 12 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
9 | 5 | 1 | 4 | 7 | 9 | 0 | 0 | 1 | 7 | 0 | 1 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
82 | 98 | 119 | 80 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
51 | 92 | 77 | 159 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
13 | 133 | 167 | 66 |
ND1 (size: 956 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
20 | 12 | 17 | 5 | 10 | 29 | 2 | 7 | 7 | 0 | 1 | 3 | 9 | 0 | 6 | 15 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 1 | 0 | 5 | 10 | 12 | 1 | 0 | 5 | 7 | 0 | 2 | 12 | 8 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 15 | 0 | 1 | 5 | 13 | 0 | 0 | 3 | 4 | 8 | 0 | 2 | 3 | 9 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 11 | 0 | 1 | 2 | 7 | 0 | 1 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
67 | 86 | 93 | 71 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
33 | 90 | 55 | 139 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 101 | 158 | 52 |
ND2 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
23 | 17 | 38 | 3 | 14 | 29 | 0 | 10 | 9 | 0 | 1 | 3 | 4 | 0 | 6 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 4 | 7 | 5 | 0 | 1 | 4 | 8 | 1 | 1 | 7 | 12 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
17 | 19 | 0 | 4 | 6 | 13 | 2 | 0 | 2 | 4 | 4 | 0 | 0 | 4 | 12 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 4 | 1 | 0 | 0 | 13 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
43 | 85 | 152 | 67 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 102 | 57 | 158 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 105 | 178 | 58 |
ND3 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
23 | 17 | 38 | 3 | 14 | 29 | 0 | 10 | 9 | 0 | 1 | 3 | 4 | 0 | 6 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 0 | 4 | 7 | 5 | 0 | 1 | 4 | 8 | 1 | 1 | 7 | 12 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
17 | 19 | 0 | 4 | 6 | 13 | 2 | 0 | 2 | 4 | 4 | 0 | 0 | 4 | 12 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 4 | 1 | 0 | 0 | 13 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
43 | 85 | 152 | 67 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
30 | 102 | 57 | 158 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
6 | 105 | 178 | 58 |
ND4 (size: 1378 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
20 | 21 | 33 | 17 | 15 | 43 | 6 | 12 | 10 | 1 | 3 | 6 | 5 | 1 | 6 | 15 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 2 | 3 | 11 | 12 | 1 | 1 | 8 | 7 | 2 | 4 | 7 | 11 | 0 | 6 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 19 | 2 | 8 | 9 | 9 | 1 | 1 | 10 | 7 | 8 | 0 | 1 | 4 | 19 | 6 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 6 | 2 | 1 | 3 | 10 | 1 | 3 | 1 | 5 | 1 | 0 | 0 | 0 | 0 | 13 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
72 | 137 | 158 | 92 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
55 | 112 | 85 | 207 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
22 | 151 | 195 | 91 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 3 | 9 | 1 | 3 | 10 | 2 | 5 | 2 | 0 | 1 | 0 | 5 | 0 | 1 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 3 | 0 | 3 | 5 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 3 | 0 | 2 | 5 | 2 | 0 | 0 | 1 | 2 | 2 | 0 | 1 | 2 | 3 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
21 | 22 | 29 | 27 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
9 | 24 | 17 | 49 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
8 | 32 | 45 | 14 |
ND5 (size: 1821 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
27 | 30 | 34 | 8 | 19 | 44 | 2 | 15 | 16 | 3 | 6 | 7 | 7 | 0 | 18 | 28 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 2 | 3 | 6 | 16 | 20 | 2 | 0 | 10 | 16 | 2 | 3 | 11 | 10 | 1 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
19 | 27 | 2 | 7 | 13 | 15 | 1 | 4 | 5 | 11 | 8 | 0 | 0 | 9 | 28 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 11 | 1 | 2 | 8 | 21 | 2 | 0 | 4 | 4 | 0 | 0 | 0 | 1 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
114 | 138 | 221 | 134 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
62 | 161 | 134 | 250 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
21 | 220 | 253 | 113 |
ND6 (size: 528 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
14 | 0 | 6 | 1 | 0 | 0 | 0 | 11 | 1 | 0 | 13 | 0 | 4 | 8 | 13 | 1 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
7 | 1 | 0 | 4 | 1 | 0 | 1 | 13 | 0 | 2 | 11 | 3 | 0 | 0 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 2 | 1 | 5 | 0 | 0 | 2 | 5 | 0 | 9 | 1 | 1 | 5 | 3 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 1 | 7 | 4 | 0 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
69 | 6 | 48 | 53 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
37 | 24 | 32 | 83 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
45 | 3 | 34 | 94 |
Total protein-coding genes (size: 11400 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
188 | 149 | 213 | 75 | 104 | 270 | 25 | 107 | 79 | 9 | 45 | 40 | 79 | 17 | 110 | 134 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
43 | 6 | 17 | 43 | 89 | 108 | 6 | 31 | 55 | 104 | 24 | 35 | 70 | 87 | 2 | 54 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
90 | 165 | 8 | 47 | 58 | 99 | 12 | 13 | 40 | 65 | 66 | 6 | 13 | 47 | 115 | 30 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
68 | 77 | 18 | 22 | 45 | 92 | 6 | 9 | 12 | 40 | 3 | 1 | 0 | 5 | 2 | 98 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
803 | 918 | 1224 | 845 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
459 | 973 | 746 | 1612 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
194 | 1152 | 1624 | 820 |
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​a​p​r​a​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ f​a​l​c​o​n​e​r​i​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​