Viewing data for Perameles gunnii


Scientific name Perameles gunnii
Common name Long-nosed bandicoot
Maximum lifespan 6.10 years (Perameles gunnii@AnAge)

Total mtDNA (size: 15360 bases) GC AT G C A T
Base content (bases) 5437 9923 3546 1891 4657 5266
Base content per 1 kb (bases) 354 646 231 123 303 343
Base content (%) 35.4% 64.6%
Total protein-coding genes (size: 11328 bases) GC AT G C A T
Base content (bases) 4020 7308 2757 1263 3519 3789
Base content per 1 kb (bases) 355 645 243 111 311 334
Base content (%) 35.5% 64.5%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1392 bases) GC AT G C A T
Base content (bases) 466 926 275 191 432 494
Base content per 1 kb (bases) 335 665 198 137 310 355
Base content (%) 33.5% 66.5%
Total rRNA-coding genes (size: 2531 bases) GC AT G C A T
Base content (bases) 900 1631 489 411 680 951
Base content per 1 kb (bases) 356 644 193 162 269 376
Base content (%) 35.6% 64.4%
12S rRNA gene (size: 949 bases) GC AT G C A T
Base content (bases) 359 590 198 161 244 346
Base content per 1 kb (bases) 378 622 209 170 257 365
Base content (%) 37.8% 62.2%
16S rRNA gene (size: 1582 bases) GC AT G C A T
Base content (bases) 541 1041 291 250 436 605
Base content per 1 kb (bases) 342 658 184 158 276 382
Base content (%) 34.2% 65.8%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 242 439 181 61 214 225
Base content per 1 kb (bases) 355 645 266 90 314 330
Base content (%) 35.5% 64.5%
ATP8 (size: 210 bases) GC AT G C A T
Base content (bases) 65 145 51 14 59 86
Base content per 1 kb (bases) 310 690 243 67 281 410
Base content (%) 31.0% 69.0%
COX1 (size: 1542 bases) GC AT G C A T
Base content (bases) 573 969 337 236 506 463
Base content per 1 kb (bases) 372 628 219 153 328 300
Base content (%) 37.2% 62.8%
COX2 (size: 682 bases) GC AT G C A T
Base content (bases) 242 440 152 90 205 235
Base content per 1 kb (bases) 355 645 223 132 301 345
Base content (%) 35.5% 64.5%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 306 478 192 114 244 234
Base content per 1 kb (bases) 390 610 245 145 311 298
Base content (%) 39.0% 61.0%
CYTB (size: 1146 bases) GC AT G C A T
Base content (bases) 442 704 302 140 343 361
Base content per 1 kb (bases) 386 614 264 122 299 315
Base content (%) 38.6% 61.4%
ND1 (size: 957 bases) GC AT G C A T
Base content (bases) 325 632 218 107 319 313
Base content per 1 kb (bases) 340 660 228 112 333 327
Base content (%) 34.0% 66.0%
ND2 (size: 1044 bases) GC AT G C A T
Base content (bases) 340 704 251 89 313 391
Base content per 1 kb (bases) 326 674 240 85 300 375
Base content (%) 32.6% 67.4%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 120 231 81 39 115 116
Base content per 1 kb (bases) 342 658 231 111 328 330
Base content (%) 34.2% 65.8%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 478 900 345 133 438 462
Base content per 1 kb (bases) 347 653 250 97 318 335
Base content (%) 34.7% 65.3%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 103 194 72 31 102 92
Base content per 1 kb (bases) 347 653 242 104 343 310
Base content (%) 34.7% 65.3%
ND5 (size: 1809 bases) GC AT G C A T
Base content (bases) 624 1185 448 176 567 618
Base content per 1 kb (bases) 345 655 248 97 313 342
Base content (%) 34.5% 65.5%
ND6 (size: 501 bases) GC AT G C A T
Base content (bases) 178 323 140 38 110 213
Base content per 1 kb (bases) 355 645 279 76 220 425
Base content (%) 35.5% 64.5%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.98%)
Alanine (Ala, A)
n = 15 (6.64%)
Serine (Ser, S)
n = 14 (6.19%)
Threonine (Thr, T)
n = 24 (10.62%)
Cysteine (Cys, C)
n = 1 (0.44%)
Valine (Val, V)
n = 7 (3.1%)
Leucine (Leu, L)
n = 41 (18.14%)
Isoleucine (Ile, I)
n = 28 (12.39%)
Methionine (Met, M)
n = 16 (7.08%)
Proline (Pro, P)
n = 15 (6.64%)
Phenylalanine (Phe, F)
n = 12 (5.31%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 4 (1.77%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 9 (3.98%)
Glutamine (Gln, Q)
n = 7 (3.1%)
Histidine (His, H)
n = 5 (2.21%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 7 (3.1%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 10 15 6 2 20 0 13 7 0 2 1 4 0 6 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 0 2 7 6 0 1 4 4 0 7 1 7 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 8 0 3 2 6 0 0 3 1 2 0 0 5 4 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 1 4 0 1 2 4 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
36 62 84 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 65 34 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
1 54 107 65
ATP8 (size: 210 bases)
Amino acid sequence: MPQLDTSTWLLVIFLMIMALFCMYQLKMLNQKLISISPQNNNITITKPQLPWEKKWTKIYLPHSSPLQL*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.45%)
Serine (Ser, S)
n = 5 (7.25%)
Threonine (Thr, T)
n = 5 (7.25%)
Cysteine (Cys, C)
n = 1 (1.45%)
Valine (Val, V)
n = 1 (1.45%)
Leucine (Leu, L)
n = 12 (17.39%)
Isoleucine (Ile, I)
n = 7 (10.14%)
Methionine (Met, M)
n = 5 (7.25%)
Proline (Pro, P)
n = 6 (8.7%)
Phenylalanine (Phe, F)
n = 2 (2.9%)
Tyrosine (Tyr, Y)
n = 2 (2.9%)
Tryptophan (Trp, W)
n = 3 (4.35%)
Aspartic acid (Asp, D)
n = 1 (1.45%)
Glutamic acid (Glu, E)
n = 1 (1.45%)
Asparagine (Asn, N)
n = 4 (5.8%)
Glutamine (Gln, Q)
n = 6 (8.7%)
Histidine (His, H)
n = 1 (1.45%)
Lysine (Lys, K)
n = 6 (8.7%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 2 2 2 0 8 0 1 6 0 1 0 0 0 0 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 0 1 0 0 0 0 0 0 0 0 3 3 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 1 0 0 5 0 0 0 1 1 0 1 2 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 0 0 1 6 0 0 0 0 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
4 23 27 16
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 17 22 27
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 11 37 16
COX1 (size: 1542 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.16%)
Alanine (Ala, A)
n = 40 (7.8%)
Serine (Ser, S)
n = 32 (6.24%)
Threonine (Thr, T)
n = 35 (6.82%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.82%)
Leucine (Leu, L)
n = 61 (11.89%)
Isoleucine (Ile, I)
n = 45 (8.77%)
Methionine (Met, M)
n = 28 (5.46%)
Proline (Pro, P)
n = 28 (5.46%)
Phenylalanine (Phe, F)
n = 42 (8.19%)
Tyrosine (Tyr, Y)
n = 20 (3.9%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 16 (3.12%)
Glutamic acid (Glu, E)
n = 8 (1.56%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 17 (3.31%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 15 27 13 3 27 3 15 4 3 12 2 18 3 22 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 0 10 11 19 0 10 5 30 2 10 3 14 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 18 0 8 2 19 0 0 3 12 8 1 0 8 9 10
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 8 0 12 4 9 0 1 1 6 0 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
146 106 137 125
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 132 95 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 99 231 170
COX2 (size: 682 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 10 (4.42%)
Serine (Ser, S)
n = 17 (7.52%)
Threonine (Thr, T)
n = 18 (7.96%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 15 (6.64%)
Leucine (Leu, L)
n = 29 (12.83%)
Isoleucine (Ile, I)
n = 18 (7.96%)
Methionine (Met, M)
n = 17 (7.52%)
Proline (Pro, P)
n = 14 (6.19%)
Phenylalanine (Phe, F)
n = 7 (3.1%)
Tyrosine (Tyr, Y)
n = 13 (5.75%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 10 (4.42%)
Glutamic acid (Glu, E)
n = 14 (6.19%)
Asparagine (Asn, N)
n = 5 (2.21%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 6 (2.65%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 6 14 10 1 9 1 8 8 0 3 3 8 1 4 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 5 2 3 0 3 3 2 0 2 2 10 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 11 0 5 2 5 0 2 3 6 7 1 0 3 2 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 13 1 5 5 5 0 0 0 6 0 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 55 68 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 54 61 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 43 106 71
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 16 (6.15%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 3 (1.15%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 6 8 8 5 7 2 11 7 1 2 2 11 0 14 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 7 4 5 0 0 6 14 1 2 0 9 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 12 0 2 2 12 0 1 2 7 4 0 0 2 3 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 8 0 1 2 2 0 1 0 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 64 58 76
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 65 54 98
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 63 122 69
CYTB (size: 1146 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.3%)
Alanine (Ala, A)
n = 24 (6.3%)
Serine (Ser, S)
n = 22 (5.77%)
Threonine (Thr, T)
n = 26 (6.82%)
Cysteine (Cys, C)
n = 2 (0.52%)
Valine (Val, V)
n = 18 (4.72%)
Leucine (Leu, L)
n = 64 (16.8%)
Isoleucine (Ile, I)
n = 38 (9.97%)
Methionine (Met, M)
n = 14 (3.67%)
Proline (Pro, P)
n = 24 (6.3%)
Phenylalanine (Phe, F)
n = 25 (6.56%)
Tyrosine (Tyr, Y)
n = 14 (3.67%)
Tryptophan (Trp, W)
n = 12 (3.15%)
Aspartic acid (Asp, D)
n = 12 (3.15%)
Glutamic acid (Glu, E)
n = 6 (1.57%)
Asparagine (Asn, N)
n = 18 (4.72%)
Glutamine (Gln, Q)
n = 7 (1.84%)
Histidine (His, H)
n = 10 (2.62%)
Lysine (Lys, K)
n = 11 (2.89%)
Arginine (Arg, R)
n = 10 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 15 12 9 8 30 0 16 7 0 4 3 11 0 10 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 4 10 10 0 1 5 18 0 7 4 13 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 13 0 8 3 9 0 0 2 8 6 0 1 5 13 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 6 0 1 11 11 0 2 2 4 2 1 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 98 110 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 94 78 159
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 110 173 94
ND1 (size: 957 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.09%)
Alanine (Ala, A)
n = 26 (8.18%)
Serine (Ser, S)
n = 22 (6.92%)
Threonine (Thr, T)
n = 24 (7.55%)
Cysteine (Cys, C)
n = 3 (0.94%)
Valine (Val, V)
n = 15 (4.72%)
Leucine (Leu, L)
n = 53 (16.67%)
Isoleucine (Ile, I)
n = 33 (10.38%)
Methionine (Met, M)
n = 17 (5.35%)
Proline (Pro, P)
n = 18 (5.66%)
Phenylalanine (Phe, F)
n = 20 (6.29%)
Tyrosine (Tyr, Y)
n = 12 (3.77%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 4 (1.26%)
Glutamic acid (Glu, E)
n = 10 (3.14%)
Asparagine (Asn, N)
n = 14 (4.4%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 3 (0.94%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 8 (2.52%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 11 15 8 1 24 1 18 6 0 3 3 9 0 13 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 7 10 9 0 2 3 7 1 3 0 15 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 11 0 6 2 14 0 0 0 9 3 1 1 7 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 10 0 2 2 8 0 3 1 4 0 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 69 96 86
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 90 58 138
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 59 159 95
ND2 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.75%)
Alanine (Ala, A)
n = 25 (7.2%)
Serine (Ser, S)
n = 32 (9.22%)
Threonine (Thr, T)
n = 35 (10.09%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 10 (2.88%)
Leucine (Leu, L)
n = 57 (16.43%)
Isoleucine (Ile, I)
n = 37 (10.66%)
Methionine (Met, M)
n = 29 (8.36%)
Proline (Pro, P)
n = 18 (5.19%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 11 (3.17%)
Tryptophan (Trp, W)
n = 12 (3.46%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 22 (6.34%)
Glutamine (Gln, Q)
n = 9 (2.59%)
Histidine (His, H)
n = 4 (1.15%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 10 27 11 1 26 0 18 9 0 0 2 8 0 7 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 0 6 8 11 0 3 1 8 1 2 1 15 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 20 0 1 6 23 0 0 2 6 5 0 1 9 13 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 0 0 1 9 0 0 0 3 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 72 134 88
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 108 62 147
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 71 195 78
ND3 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.75%)
Alanine (Ala, A)
n = 25 (7.2%)
Serine (Ser, S)
n = 32 (9.22%)
Threonine (Thr, T)
n = 35 (10.09%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 10 (2.88%)
Leucine (Leu, L)
n = 57 (16.43%)
Isoleucine (Ile, I)
n = 37 (10.66%)
Methionine (Met, M)
n = 29 (8.36%)
Proline (Pro, P)
n = 18 (5.19%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 11 (3.17%)
Tryptophan (Trp, W)
n = 12 (3.46%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 22 (6.34%)
Glutamine (Gln, Q)
n = 9 (2.59%)
Histidine (His, H)
n = 4 (1.15%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 10 27 11 1 26 0 18 9 0 0 2 8 0 7 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 0 6 8 11 0 3 1 8 1 2 1 15 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 20 0 1 6 23 0 0 2 6 5 0 1 9 13 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 0 0 1 9 0 0 0 3 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 72 134 88
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 108 62 147
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 71 195 78
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (4.15%)
Alanine (Ala, A)
n = 25 (5.46%)
Serine (Ser, S)
n = 47 (10.26%)
Threonine (Thr, T)
n = 35 (7.64%)
Cysteine (Cys, C)
n = 6 (1.31%)
Valine (Val, V)
n = 15 (3.28%)
Leucine (Leu, L)
n = 85 (18.56%)
Isoleucine (Ile, I)
n = 48 (10.48%)
Methionine (Met, M)
n = 35 (7.64%)
Proline (Pro, P)
n = 21 (4.59%)
Phenylalanine (Phe, F)
n = 17 (3.71%)
Tyrosine (Tyr, Y)
n = 17 (3.71%)
Tryptophan (Trp, W)
n = 11 (2.4%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 21 (4.59%)
Glutamine (Gln, Q)
n = 7 (1.53%)
Histidine (His, H)
n = 16 (3.49%)
Lysine (Lys, K)
n = 13 (2.84%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 18 32 14 9 29 1 31 7 0 5 1 9 0 7 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 5 10 8 7 0 1 5 13 0 3 5 13 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 16 0 9 8 18 1 4 7 11 6 0 1 6 15 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 0 0 3 13 0 2 1 7 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 107 163 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
57 117 85 200
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 121 214 118
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 5 (5.1%)
Leucine (Leu, L)
n = 25 (25.51%)
Isoleucine (Ile, I)
n = 7 (7.14%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 3 8 5 3 8 0 8 2 0 1 0 4 0 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
0 1 2 1 3 4 0 1 1 3 0 0 0 2 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 0 0 1 3 4 0 0 0 2 2 0 1 2 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 0 1 1 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 24 25 29
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 22 19 49
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
1 26 48 24
ND5 (size: 1809 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.98%)
Alanine (Ala, A)
n = 40 (6.64%)
Serine (Ser, S)
n = 48 (7.97%)
Threonine (Thr, T)
n = 55 (9.14%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 13 (2.16%)
Leucine (Leu, L)
n = 86 (14.29%)
Isoleucine (Ile, I)
n = 67 (11.13%)
Methionine (Met, M)
n = 44 (7.31%)
Proline (Pro, P)
n = 27 (4.49%)
Phenylalanine (Phe, F)
n = 42 (6.98%)
Tyrosine (Tyr, Y)
n = 18 (2.99%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 12 (1.99%)
Glutamic acid (Glu, E)
n = 9 (1.5%)
Asparagine (Asn, N)
n = 37 (6.15%)
Glutamine (Gln, Q)
n = 15 (2.49%)
Histidine (His, H)
n = 15 (2.49%)
Lysine (Lys, K)
n = 18 (2.99%)
Arginine (Arg, R)
n = 9 (1.5%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
43 24 41 15 3 44 1 23 15 0 4 2 7 0 19 23
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 4 1 14 17 9 0 5 7 18 0 8 5 13 1 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 22 1 4 11 24 0 5 4 7 11 0 0 21 16 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 9 0 6 6 17 1 0 1 8 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
104 129 230 140
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
65 161 125 252
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 158 263 175
ND6 (size: 501 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (12.65%)
Alanine (Ala, A)
n = 9 (5.42%)
Serine (Ser, S)
n = 10 (6.02%)
Threonine (Thr, T)
n = 9 (5.42%)
Cysteine (Cys, C)
n = 3 (1.81%)
Valine (Val, V)
n = 27 (16.27%)
Leucine (Leu, L)
n = 21 (12.65%)
Isoleucine (Ile, I)
n = 10 (6.02%)
Methionine (Met, M)
n = 9 (5.42%)
Proline (Pro, P)
n = 3 (1.81%)
Phenylalanine (Phe, F)
n = 12 (7.23%)
Tyrosine (Tyr, Y)
n = 8 (4.82%)
Tryptophan (Trp, W)
n = 5 (3.01%)
Aspartic acid (Asp, D)
n = 3 (1.81%)
Glutamic acid (Glu, E)
n = 7 (4.22%)
Asparagine (Asn, N)
n = 4 (2.41%)
Glutamine (Gln, Q)
n = 1 (0.6%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.2%)
Arginine (Arg, R)
n = 2 (1.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 1 6 0 0 1 0 12 0 1 13 0 8 6 9 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 3 0 7 0 1 1 8 0 5 8 2 0 1 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 1 3 0 1 1 5 0 8 0 2 8 4 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 5 3 0 2 0 1 0 1 0 1 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 7 40 53
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 26 25 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 5 45 81
Total protein-coding genes (size: 11382 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 214 (5.64%)
Alanine (Ala, A)
n = 247 (6.51%)
Serine (Ser, S)
n = 284 (7.49%)
Threonine (Thr, T)
n = 299 (7.89%)
Cysteine (Cys, C)
n = 33 (0.87%)
Valine (Val, V)
n = 178 (4.69%)
Leucine (Leu, L)
n = 595 (15.69%)
Isoleucine (Ile, I)
n = 366 (9.65%)
Methionine (Met, M)
n = 236 (6.22%)
Proline (Pro, P)
n = 195 (5.14%)
Phenylalanine (Phe, F)
n = 227 (5.99%)
Tyrosine (Tyr, Y)
n = 138 (3.64%)
Tryptophan (Trp, W)
n = 106 (2.8%)
Aspartic acid (Asp, D)
n = 69 (1.82%)
Glutamic acid (Glu, E)
n = 88 (2.32%)
Asparagine (Asn, N)
n = 164 (4.32%)
Glutamine (Gln, Q)
n = 86 (2.27%)
Histidine (His, H)
n = 97 (2.56%)
Lysine (Lys, K)
n = 91 (2.4%)
Arginine (Arg, R)
n = 70 (1.85%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
238 128 210 103 37 244 11 186 81 5 50 19 99 10 118 109
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
26 20 13 77 83 86 1 35 41 125 13 47 25 120 3 76
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
81 138 4 53 41 144 2 17 27 80 58 5 14 77 87 49
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
48 82 6 30 39 90 1 11 8 49 2 2 0 6 2 101
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
796 843 1202 952
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
469 981 741 1602
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
105 844 1763 1081 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​e​r​a​m​e​l​e​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ g​u​n​n​i​i​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.