Viewing data for Petaurista alborufus


Scientific name Petaurista alborufus
Common name Red and white giant flying squirrel
Maximum lifespan 21.40 years (Petaurista alborufus@AnAge)

Total mtDNA (size: 16507 bases) GC AT G C A T
Base content (bases) 6539 9968 4358 2181 4719 5249
Base content per 1 kb (bases) 396 604 264 132 286 318
Base content (%) 39.6% 60.4%
Total protein-coding genes (size: 11331 bases) GC AT G C A T
Base content (bases) 4529 6802 3164 1365 3328 3474
Base content per 1 kb (bases) 400 600 279 120 294 307
Base content (%) 40.0% 60.0%
D-loop (size: 976 bases) GC AT G C A T
Base content (bases) 388 588 256 132 282 306
Base content per 1 kb (bases) 398 602 262 135 289 314
Base content (%) 39.8% 60.2%
Total tRNA-coding genes (size: 1517 bases) GC AT G C A T
Base content (bases) 554 963 320 234 437 526
Base content per 1 kb (bases) 365 635 211 154 288 347
Base content (%) 36.5% 63.5%
Total rRNA-coding genes (size: 2545 bases) GC AT G C A T
Base content (bases) 1014 1531 582 432 635 896
Base content per 1 kb (bases) 398 602 229 170 250 352
Base content (%) 39.8% 60.2%
12S rRNA gene (size: 971 bases) GC AT G C A T
Base content (bases) 412 559 242 170 236 323
Base content per 1 kb (bases) 424 576 249 175 243 333
Base content (%) 42.4% 57.6%
16S rRNA gene (size: 1574 bases) GC AT G C A T
Base content (bases) 602 972 340 262 399 573
Base content per 1 kb (bases) 382 618 216 166 253 364
Base content (%) 38.2% 61.8%

ATP6 (size: 680 bases) GC AT G C A T
Base content (bases) 274 406 199 75 210 196
Base content per 1 kb (bases) 403 597 293 110 309 288
Base content (%) 40.3% 59.7%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 72 132 61 11 57 75
Base content per 1 kb (bases) 353 647 299 54 279 368
Base content (%) 35.3% 64.7%
COX1 (size: 1542 bases) GC AT G C A T
Base content (bases) 638 904 374 264 476 428
Base content per 1 kb (bases) 414 586 243 171 309 278
Base content (%) 41.4% 58.6%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 279 405 174 105 196 209
Base content per 1 kb (bases) 408 592 254 154 287 306
Base content (%) 40.8% 59.2%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 340 444 217 123 236 208
Base content per 1 kb (bases) 434 566 277 157 301 265
Base content (%) 43.4% 56.6%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 492 648 345 147 331 317
Base content per 1 kb (bases) 432 568 303 129 290 278
Base content (%) 43.2% 56.8%
ND1 (size: 957 bases) GC AT G C A T
Base content (bases) 393 564 282 111 264 300
Base content per 1 kb (bases) 411 589 295 116 276 313
Base content (%) 41.1% 58.9%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 383 659 296 87 301 358
Base content per 1 kb (bases) 368 632 284 83 289 344
Base content (%) 36.8% 63.2%
ND3 (size: 347 bases) GC AT G C A T
Base content (bases) 152 195 104 48 102 93
Base content per 1 kb (bases) 438 562 300 138 294 268
Base content (%) 43.8% 56.2%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 506 872 362 144 439 433
Base content per 1 kb (bases) 367 633 263 104 319 314
Base content (%) 36.7% 63.3%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 120 177 84 36 98 79
Base content per 1 kb (bases) 404 596 283 121 330 266
Base content (%) 40.4% 59.6%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 711 1107 525 186 525 582
Base content per 1 kb (bases) 391 609 289 102 289 320
Base content (%) 39.1% 60.9%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 195 330 161 34 113 217
Base content per 1 kb (bases) 371 629 307 65 215 413
Base content (%) 37.1% 62.9%

ATP6 (size: 680 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.89%)
Alanine (Ala, A)
n = 15 (6.67%)
Serine (Ser, S)
n = 14 (6.22%)
Threonine (Thr, T)
n = 21 (9.33%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.44%)
Leucine (Leu, L)
n = 42 (18.67%)
Isoleucine (Ile, I)
n = 28 (12.44%)
Methionine (Met, M)
n = 13 (5.78%)
Proline (Pro, P)
n = 15 (6.67%)
Phenylalanine (Phe, F)
n = 13 (5.78%)
Tyrosine (Tyr, Y)
n = 2 (0.89%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 11 (4.89%)
Glutamine (Gln, Q)
n = 8 (3.56%)
Histidine (His, H)
n = 7 (3.11%)
Lysine (Lys, K)
n = 4 (1.78%)
Arginine (Arg, R)
n = 5 (2.22%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 11 10 12 7 15 2 6 7 1 1 2 6 1 9 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 1 6 8 0 2 3 4 2 3 9 3 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 7 0 4 3 3 1 1 2 1 1 0 0 5 6 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 1 1 0 2 2 2 0 3 0 0 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 71 80 35
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 62 36 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 66 79 68
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFITIMSMFLALFILFQSKISNHSYPSNPSPKDTKLMTQNTPWEKKWTKIYSPLSLPLH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.49%)
Serine (Ser, S)
n = 9 (13.43%)
Threonine (Thr, T)
n = 7 (10.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 8 (11.94%)
Isoleucine (Ile, I)
n = 5 (7.46%)
Methionine (Met, M)
n = 4 (5.97%)
Proline (Pro, P)
n = 7 (10.45%)
Phenylalanine (Phe, F)
n = 4 (5.97%)
Tyrosine (Tyr, Y)
n = 2 (2.99%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 2 (2.99%)
Glutamic acid (Glu, E)
n = 1 (1.49%)
Asparagine (Asn, N)
n = 3 (4.48%)
Glutamine (Gln, Q)
n = 3 (4.48%)
Histidine (His, H)
n = 2 (2.99%)
Lysine (Lys, K)
n = 6 (8.96%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 3 1 2 3 1 1 3 0 0 0 0 0 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 0 0 0 0 0 0 1 5 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 4 1 1 3 4 1 0 0 2 0 0 0 0 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 0 2 0 6 0 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
4 19 25 20
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 24 20 21
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 18 30 16
COX1 (size: 1542 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.16%)
Alanine (Ala, A)
n = 40 (7.8%)
Serine (Ser, S)
n = 31 (6.04%)
Threonine (Thr, T)
n = 39 (7.6%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.6%)
Leucine (Leu, L)
n = 60 (11.7%)
Isoleucine (Ile, I)
n = 36 (7.02%)
Methionine (Met, M)
n = 32 (6.24%)
Proline (Pro, P)
n = 28 (5.46%)
Phenylalanine (Phe, F)
n = 42 (8.19%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 16 (3.12%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.51%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 14 28 9 8 21 7 14 3 3 8 7 22 2 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 13 9 15 3 8 9 20 10 10 8 10 0 16
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 15 0 7 5 16 0 1 2 9 10 2 1 8 8 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 7 3 7 8 7 2 1 2 5 0 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
151 105 135 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 135 94 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 134 199 144
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 8 (3.52%)
Serine (Ser, S)
n = 22 (9.69%)
Threonine (Thr, T)
n = 16 (7.05%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 11 (4.85%)
Leucine (Leu, L)
n = 35 (15.42%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 14 (6.17%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 12 (5.29%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 5 (2.2%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 11 10 7 3 9 5 9 5 0 4 6 1 0 3 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 3 2 2 1 2 2 2 2 3 3 8 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 8 1 5 4 7 1 1 4 5 5 1 2 2 3 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 9 6 6 6 3 2 0 0 6 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 57 64 53
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 55 61 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 62 84 57
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 16 (6.15%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 13 (5.0%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 10 (3.85%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 8 (3.08%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 6 6 8 4 17 1 5 6 1 2 5 7 1 10 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 6 6 3 1 2 10 8 2 1 8 1 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 10 1 6 3 9 0 0 3 6 4 1 0 4 4 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 2 3 0 3 0 2 0 2 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 68 59 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 66 55 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 83 94 69
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.6%)
Alanine (Ala, A)
n = 20 (5.28%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 27 (7.12%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 18 (4.75%)
Leucine (Leu, L)
n = 60 (15.83%)
Isoleucine (Ile, I)
n = 37 (9.76%)
Methionine (Met, M)
n = 15 (3.96%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 16 (4.22%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 12 (3.17%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 15 (3.96%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 20 11 17 17 17 2 7 4 2 2 10 6 0 12 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 4 4 8 7 1 4 10 11 0 6 3 13 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 16 0 2 9 7 3 1 1 4 12 1 0 2 13 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 5 1 6 6 10 0 0 2 6 0 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 102 107 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 90 78 160
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 153 132 81
ND1 (size: 957 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.09%)
Alanine (Ala, A)
n = 28 (8.81%)
Serine (Ser, S)
n = 21 (6.6%)
Threonine (Thr, T)
n = 29 (9.12%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 13 (4.09%)
Leucine (Leu, L)
n = 57 (17.92%)
Isoleucine (Ile, I)
n = 23 (7.23%)
Methionine (Met, M)
n = 20 (6.29%)
Proline (Pro, P)
n = 23 (7.23%)
Phenylalanine (Phe, F)
n = 19 (5.97%)
Tyrosine (Tyr, Y)
n = 11 (3.46%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 10 (3.14%)
Asparagine (Asn, N)
n = 12 (3.77%)
Glutamine (Gln, Q)
n = 8 (2.52%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 7 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 14 18 10 8 26 3 9 8 0 2 4 7 0 10 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 3 12 13 0 1 6 4 2 6 9 8 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 14 0 2 5 12 0 0 2 5 6 0 1 4 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 7 3 3 0 8 0 0 0 7 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 87 94 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 99 55 132
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 96 151 61
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 18 (5.2%)
Serine (Ser, S)
n = 34 (9.83%)
Threonine (Thr, T)
n = 33 (9.54%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (3.18%)
Leucine (Leu, L)
n = 56 (16.18%)
Isoleucine (Ile, I)
n = 40 (11.56%)
Methionine (Met, M)
n = 30 (8.67%)
Proline (Pro, P)
n = 19 (5.49%)
Phenylalanine (Phe, F)
n = 16 (4.62%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 23 (6.65%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 3 (0.87%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 22 29 5 11 24 2 13 8 1 1 5 5 0 3 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 5 7 6 0 2 1 9 2 5 9 5 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 13 1 8 10 14 0 0 2 2 8 0 1 5 18 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 0 0 11 2 0 1 2 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 76 141 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
29 102 63 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 118 154 65
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 18 (5.2%)
Serine (Ser, S)
n = 34 (9.83%)
Threonine (Thr, T)
n = 33 (9.54%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (3.18%)
Leucine (Leu, L)
n = 56 (16.18%)
Isoleucine (Ile, I)
n = 40 (11.56%)
Methionine (Met, M)
n = 30 (8.67%)
Proline (Pro, P)
n = 19 (5.49%)
Phenylalanine (Phe, F)
n = 16 (4.62%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 23 (6.65%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 3 (0.87%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 22 29 5 11 24 2 13 8 1 1 5 5 0 3 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 5 7 6 0 2 1 9 2 5 9 5 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 13 1 8 10 14 0 0 2 2 8 0 1 5 18 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 0 0 11 2 0 1 2 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 76 141 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
29 102 63 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 118 154 65
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 28 (6.11%)
Serine (Ser, S)
n = 49 (10.7%)
Threonine (Thr, T)
n = 31 (6.77%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 10 (2.18%)
Leucine (Leu, L)
n = 83 (18.12%)
Isoleucine (Ile, I)
n = 56 (12.23%)
Methionine (Met, M)
n = 36 (7.86%)
Proline (Pro, P)
n = 23 (5.02%)
Phenylalanine (Phe, F)
n = 21 (4.59%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 20 (4.37%)
Glutamine (Gln, Q)
n = 9 (1.97%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 34 32 9 16 27 2 24 8 1 2 3 5 0 11 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 8 11 9 0 2 3 10 2 7 7 9 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 13 1 13 6 18 1 2 9 9 6 2 5 9 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 4 3 1 11 1 2 2 6 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 107 166 118
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 120 80 206
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 135 187 114
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 7 (7.14%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 6 (6.12%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 4 6 5 4 10 2 3 2 0 1 2 4 0 2 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 1 3 2 1 1 3 0 0 1 1 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 0 1 4 3 0 0 1 2 2 0 0 3 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 28 25 25
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 21 17 52
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 35 37 21
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.46%)
Alanine (Ala, A)
n = 40 (6.61%)
Serine (Ser, S)
n = 51 (8.43%)
Threonine (Thr, T)
n = 59 (9.75%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 14 (2.31%)
Leucine (Leu, L)
n = 98 (16.2%)
Isoleucine (Ile, I)
n = 57 (9.42%)
Methionine (Met, M)
n = 33 (5.45%)
Proline (Pro, P)
n = 27 (4.46%)
Phenylalanine (Phe, F)
n = 44 (7.27%)
Tyrosine (Tyr, Y)
n = 21 (3.47%)
Tryptophan (Trp, W)
n = 13 (2.15%)
Aspartic acid (Asp, D)
n = 10 (1.65%)
Glutamic acid (Glu, E)
n = 14 (2.31%)
Asparagine (Asn, N)
n = 35 (5.79%)
Glutamine (Gln, Q)
n = 14 (2.31%)
Histidine (His, H)
n = 11 (1.82%)
Lysine (Lys, K)
n = 22 (3.64%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 37 31 18 21 45 2 12 13 1 4 1 9 0 22 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 3 3 3 13 22 2 1 10 15 1 9 12 5 1 16
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 24 2 11 14 18 0 5 3 7 14 1 0 10 25 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 11 3 4 6 19 3 2 4 3 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
105 147 214 140
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
63 169 128 246
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 209 240 139
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.79%)
Alanine (Ala, A)
n = 7 (4.02%)
Serine (Ser, S)
n = 15 (8.62%)
Threonine (Thr, T)
n = 6 (3.45%)
Cysteine (Cys, C)
n = 2 (1.15%)
Valine (Val, V)
n = 25 (14.37%)
Leucine (Leu, L)
n = 24 (13.79%)
Isoleucine (Ile, I)
n = 10 (5.75%)
Methionine (Met, M)
n = 11 (6.32%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 13 (7.47%)
Tyrosine (Tyr, Y)
n = 8 (4.6%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 5 (2.87%)
Glutamic acid (Glu, E)
n = 10 (5.75%)
Asparagine (Asn, N)
n = 2 (1.15%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.15%)
Arginine (Arg, R)
n = 2 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 0 4 2 0 0 0 14 0 0 11 0 5 9 13 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 1 5 0 2 0 5 1 6 12 1 0 0 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 4 0 4 0 4 1 6 0 8 0 3 8 2 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 5 5 5 0 2 0 0 0 0 2 0 1 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 7 38 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 25 27 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
50 2 48 75
Total protein-coding genes (size: 11398 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 216 (5.69%)
Alanine (Ala, A)
n = 237 (6.24%)
Serine (Ser, S)
n = 304 (8.01%)
Threonine (Thr, T)
n = 303 (7.98%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 182 (4.79%)
Leucine (Leu, L)
n = 608 (16.02%)
Isoleucine (Ile, I)
n = 337 (8.88%)
Methionine (Met, M)
n = 232 (6.11%)
Proline (Pro, P)
n = 199 (5.24%)
Phenylalanine (Phe, F)
n = 245 (6.45%)
Tyrosine (Tyr, Y)
n = 131 (3.45%)
Tryptophan (Trp, W)
n = 105 (2.77%)
Aspartic acid (Asp, D)
n = 70 (1.84%)
Glutamic acid (Glu, E)
n = 99 (2.61%)
Asparagine (Asn, N)
n = 160 (4.21%)
Glutamine (Gln, Q)
n = 80 (2.11%)
Histidine (His, H)
n = 93 (2.45%)
Lysine (Lys, K)
n = 97 (2.56%)
Arginine (Arg, R)
n = 65 (1.71%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
161 176 192 108 112 221 30 119 70 10 39 48 80 15 120 125
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
40 9 17 53 83 92 9 30 60 90 36 54 79 63 3 79
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
82 135 7 64 68 117 8 17 30 62 69 11 18 58 102 32
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
61 70 29 40 30 84 13 10 11 41 3 1 1 6 0 94
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
804 908 1178 907
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
461 996 736 1604
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
233 1153 1475 936 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​e​t​a​u​r​i​s​t​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ a​l​b​o​r​u​f​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.