Viewing data for Gambusia affinis


Scientific name Gambusia affinis
Common name Mosquitofish
Maximum lifespan 3.00 years (Gambusia affinis@AnAge)

Total mtDNA (size: 16614 bases) GC AT G C A T
Base content (bases) 7459 9155 4856 2603 4502 4653
Base content per 1 kb (bases) 449 551 292 157 271 280
Base content (%) 44.9% 55.1%
Total protein-coding genes (size: 11412 bases) GC AT G C A T
Base content (bases) 5186 6226 3543 1643 3268 2958
Base content per 1 kb (bases) 454 546 310 144 286 259
Base content (%) 45.4% 54.6%
D-loop (size: 858 bases) GC AT G C A T
Base content (bases) 315 543 189 126 276 267
Base content per 1 kb (bases) 367 633 220 147 322 311
Base content (%) 36.7% 63.3%
Total tRNA-coding genes (size: 1550 bases) GC AT G C A T
Base content (bases) 700 850 397 303 368 482
Base content per 1 kb (bases) 452 548 256 195 237 311
Base content (%) 45.2% 54.8%
Total rRNA-coding genes (size: 2622 bases) GC AT G C A T
Base content (bases) 1178 1444 670 508 553 891
Base content per 1 kb (bases) 449 551 256 194 211 340
Base content (%) 44.9% 55.1%
12S rRNA gene (size: 947 bases) GC AT G C A T
Base content (bases) 443 504 251 192 192 312
Base content per 1 kb (bases) 468 532 265 203 203 329
Base content (%) 46.8% 53.2%
16S rRNA gene (size: 1675 bases) GC AT G C A T
Base content (bases) 735 940 419 316 361 579
Base content per 1 kb (bases) 439 561 250 189 216 346
Base content (%) 43.9% 56.1%

ATP6 (size: 683 bases) GC AT G C A T
Base content (bases) 314 369 223 91 199 170
Base content per 1 kb (bases) 460 540 327 133 291 249
Base content (%) 46.0% 54.0%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 69 99 51 18 44 55
Base content per 1 kb (bases) 411 589 304 107 262 327
Base content (%) 41.1% 58.9%
COX1 (size: 1557 bases) GC AT G C A T
Base content (bases) 710 847 434 276 458 389
Base content per 1 kb (bases) 456 544 279 177 294 250
Base content (%) 45.6% 54.4%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 306 385 199 107 187 198
Base content per 1 kb (bases) 443 557 288 155 271 287
Base content (%) 44.3% 55.7%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 372 413 241 131 217 196
Base content per 1 kb (bases) 474 526 307 167 276 250
Base content (%) 47.4% 52.6%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 524 616 354 170 347 269
Base content per 1 kb (bases) 460 540 311 149 304 236
Base content (%) 46.0% 54.0%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 452 523 303 149 286 237
Base content per 1 kb (bases) 464 536 311 153 293 243
Base content (%) 46.4% 53.6%
ND2 (size: 1047 bases) GC AT G C A T
Base content (bases) 473 574 353 120 299 275
Base content per 1 kb (bases) 452 548 337 115 286 263
Base content (%) 45.2% 54.8%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 150 199 101 49 118 81
Base content per 1 kb (bases) 430 570 289 140 338 232
Base content (%) 43.0% 57.0%
ND4 (size: 1386 bases) GC AT G C A T
Base content (bases) 635 751 451 184 400 351
Base content per 1 kb (bases) 458 542 325 133 289 253
Base content (%) 45.8% 54.2%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 138 159 97 41 88 71
Base content per 1 kb (bases) 465 535 327 138 296 239
Base content (%) 46.5% 53.5%
ND5 (size: 1833 bases) GC AT G C A T
Base content (bases) 801 1032 558 243 540 492
Base content per 1 kb (bases) 437 563 304 133 295 268
Base content (%) 43.7% 56.3%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 248 274 181 67 91 183
Base content per 1 kb (bases) 475 525 347 128 174 351
Base content (%) 47.5% 52.5%

ATP6 (size: 683 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.42%)
Alanine (Ala, A)
n = 22 (9.73%)
Serine (Ser, S)
n = 9 (3.98%)
Threonine (Thr, T)
n = 24 (10.62%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 16 (7.08%)
Leucine (Leu, L)
n = 54 (23.89%)
Isoleucine (Ile, I)
n = 13 (5.75%)
Methionine (Met, M)
n = 9 (3.98%)
Proline (Pro, P)
n = 15 (6.64%)
Phenylalanine (Phe, F)
n = 13 (5.75%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 8 (3.54%)
Glutamine (Gln, Q)
n = 10 (4.42%)
Histidine (His, H)
n = 4 (1.77%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 4 6 15 13 13 4 9 8 2 5 5 5 1 5 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 3 11 8 0 1 4 3 2 4 4 7 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 8 1 0 5 0 0 0 4 3 0 0 0 4 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 1 0 1 0 1 3 2 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 80 59 35
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 66 31 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 77 79 58
ATP8 (size: 168 bases)
Amino acid sequence: MPQLTPTPWLAYLLFSWLIFSVIVLPKVSTHTFMESPAPLTKQKPDTEPWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (3.64%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 2 (3.64%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 1 (1.82%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 1 0 1 2 0 3 2 0 2 0 1 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 1 0 0 0 0 0 1 3 5 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 1 0 0 1 2 0 0 1 1 0 0 1 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 1 0 1 2 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
8 16 15 17
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 20 13 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 15 27 10
COX1 (size: 1557 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.07%)
Alanine (Ala, A)
n = 46 (8.88%)
Serine (Ser, S)
n = 28 (5.41%)
Threonine (Thr, T)
n = 41 (7.92%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.14%)
Leucine (Leu, L)
n = 68 (13.13%)
Isoleucine (Ile, I)
n = 38 (7.34%)
Methionine (Met, M)
n = 22 (4.25%)
Proline (Pro, P)
n = 29 (5.6%)
Phenylalanine (Phe, F)
n = 42 (8.11%)
Tyrosine (Tyr, Y)
n = 18 (3.47%)
Tryptophan (Trp, W)
n = 17 (3.28%)
Aspartic acid (Asp, D)
n = 15 (2.9%)
Glutamic acid (Glu, E)
n = 9 (1.74%)
Asparagine (Asn, N)
n = 14 (2.7%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 20 (3.86%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.54%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 17 18 21 16 20 4 6 5 4 13 8 10 6 25 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 10 18 15 3 6 17 16 8 6 12 9 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 23 3 5 7 10 1 3 2 5 13 3 1 5 9 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 9 0 7 8 7 2 3 0 3 2 0 0 0 1 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
154 127 129 109
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 139 95 207
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 168 165 142
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.49%)
Alanine (Ala, A)
n = 16 (6.99%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 11 (4.8%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 16 (6.99%)
Leucine (Leu, L)
n = 29 (12.66%)
Isoleucine (Ile, I)
n = 21 (9.17%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 10 (4.37%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 14 (6.11%)
Glutamic acid (Glu, E)
n = 14 (6.11%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 10 (4.37%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 11 8 9 8 7 1 2 10 0 3 4 5 4 5 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 6 3 7 0 1 2 3 2 3 8 3 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 8 0 1 9 3 0 1 2 3 5 0 2 3 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 11 3 5 9 4 0 3 1 2 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 65 55 42
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 54 65 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 80 78 57
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 24 (9.23%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 10 7 11 8 8 2 5 7 2 6 3 6 0 9 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 6 8 10 0 2 11 5 3 2 8 1 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 11 1 3 3 5 0 1 2 2 9 3 0 1 3 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 7 1 2 2 2 0 0 1 3 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 72 54 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 69 55 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 100 86 59
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.6%)
Alanine (Ala, A)
n = 31 (8.18%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 25 (6.6%)
Leucine (Leu, L)
n = 59 (15.57%)
Isoleucine (Ile, I)
n = 30 (7.92%)
Methionine (Met, M)
n = 10 (2.64%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 31 (8.18%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 14 7 19 9 20 6 5 4 2 7 10 7 1 13 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 3 17 9 2 4 9 9 3 6 12 3 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 4 1 10 9 3 0 0 1 6 8 1 0 2 16 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 3 3 3 8 9 0 1 3 4 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
98 101 92 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 98 77 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 155 100 103
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.25%)
Alanine (Ala, A)
n = 31 (9.57%)
Serine (Ser, S)
n = 23 (7.1%)
Threonine (Thr, T)
n = 24 (7.41%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 18 (5.56%)
Leucine (Leu, L)
n = 67 (20.68%)
Isoleucine (Ile, I)
n = 20 (6.17%)
Methionine (Met, M)
n = 8 (2.47%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 22 (6.79%)
Tyrosine (Tyr, Y)
n = 10 (3.09%)
Tryptophan (Trp, W)
n = 7 (2.16%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 8 (2.47%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 7 5 12 14 20 7 11 6 2 4 3 9 2 12 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 2 21 8 0 2 7 6 2 10 6 8 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 6 1 6 6 7 0 0 4 4 6 2 3 3 9 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 5 6 3 1 5 2 0 2 4 2 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 96 75 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 98 56 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 109 106 78
ND2 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.89%)
Alanine (Ala, A)
n = 31 (8.91%)
Serine (Ser, S)
n = 27 (7.76%)
Threonine (Thr, T)
n = 44 (12.64%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 7 (2.01%)
Leucine (Leu, L)
n = 65 (18.68%)
Isoleucine (Ile, I)
n = 23 (6.61%)
Methionine (Met, M)
n = 18 (5.17%)
Proline (Pro, P)
n = 25 (7.18%)
Phenylalanine (Phe, F)
n = 22 (6.32%)
Tyrosine (Tyr, Y)
n = 11 (3.16%)
Tryptophan (Trp, W)
n = 10 (2.87%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 11 (3.16%)
Glutamine (Gln, Q)
n = 11 (3.16%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.3%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 7 14 25 14 14 5 7 10 1 3 2 2 0 12 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 6 19 6 0 0 7 8 2 4 12 5 4 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 12 0 3 10 5 1 2 6 6 5 1 0 5 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 0 0 2 7 1 0 0 4 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 105 112 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 119 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 129 108 93
ND3 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.89%)
Alanine (Ala, A)
n = 31 (8.91%)
Serine (Ser, S)
n = 27 (7.76%)
Threonine (Thr, T)
n = 44 (12.64%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 7 (2.01%)
Leucine (Leu, L)
n = 65 (18.68%)
Isoleucine (Ile, I)
n = 23 (6.61%)
Methionine (Met, M)
n = 18 (5.17%)
Proline (Pro, P)
n = 25 (7.18%)
Phenylalanine (Phe, F)
n = 22 (6.32%)
Tyrosine (Tyr, Y)
n = 11 (3.16%)
Tryptophan (Trp, W)
n = 10 (2.87%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 11 (3.16%)
Glutamine (Gln, Q)
n = 11 (3.16%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.3%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 7 14 25 14 14 5 7 10 1 3 2 2 0 12 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 6 19 6 0 0 7 8 2 4 12 5 4 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 12 0 3 10 5 1 2 6 6 5 1 0 5 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 0 0 2 7 1 0 0 4 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 105 112 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 119 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 129 108 93
ND4 (size: 1386 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (4.99%)
Alanine (Ala, A)
n = 39 (8.46%)
Serine (Ser, S)
n = 37 (8.03%)
Threonine (Thr, T)
n = 38 (8.24%)
Cysteine (Cys, C)
n = 6 (1.3%)
Valine (Val, V)
n = 12 (2.6%)
Leucine (Leu, L)
n = 101 (21.91%)
Isoleucine (Ile, I)
n = 34 (7.38%)
Methionine (Met, M)
n = 23 (4.99%)
Proline (Pro, P)
n = 27 (5.86%)
Phenylalanine (Phe, F)
n = 19 (4.12%)
Tyrosine (Tyr, Y)
n = 12 (2.6%)
Tryptophan (Trp, W)
n = 19 (4.12%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 11 (2.39%)
Asparagine (Asn, N)
n = 13 (2.82%)
Glutamine (Gln, Q)
n = 9 (1.95%)
Histidine (His, H)
n = 13 (2.82%)
Lysine (Lys, K)
n = 10 (2.17%)
Arginine (Arg, R)
n = 11 (2.39%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 15 17 27 28 26 2 16 8 1 4 3 4 1 11 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 4 9 19 10 1 1 12 8 2 9 12 5 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 15 1 7 15 6 0 3 6 5 7 5 2 3 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 8 3 0 4 10 0 2 5 3 1 1 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
89 143 128 102
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
69 132 72 189
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 176 151 109
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 4 (4.08%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 4 4 6 6 1 5 3 0 0 0 1 0 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 2 7 2 2 1 2 2 0 1 0 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 2 0 2 2 4 0 2 1 0 0 0 1 0 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 0 0 0 0 0 1 1 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 29 22 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
15 31 14 39
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 37 35 22
ND5 (size: 1833 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.92%)
Alanine (Ala, A)
n = 49 (8.03%)
Serine (Ser, S)
n = 44 (7.21%)
Threonine (Thr, T)
n = 61 (10.0%)
Cysteine (Cys, C)
n = 9 (1.48%)
Valine (Val, V)
n = 22 (3.61%)
Leucine (Leu, L)
n = 101 (16.56%)
Isoleucine (Ile, I)
n = 49 (8.03%)
Methionine (Met, M)
n = 25 (4.1%)
Proline (Pro, P)
n = 32 (5.25%)
Phenylalanine (Phe, F)
n = 46 (7.54%)
Tyrosine (Tyr, Y)
n = 12 (1.97%)
Tryptophan (Trp, W)
n = 14 (2.3%)
Aspartic acid (Asp, D)
n = 13 (2.13%)
Glutamic acid (Glu, E)
n = 13 (2.13%)
Asparagine (Asn, N)
n = 28 (4.59%)
Glutamine (Gln, Q)
n = 16 (2.62%)
Histidine (His, H)
n = 13 (2.13%)
Lysine (Lys, K)
n = 23 (3.77%)
Arginine (Arg, R)
n = 10 (1.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 23 15 29 20 29 5 14 15 1 5 8 7 2 23 23
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 3 6 9 20 19 1 4 16 5 5 5 23 3 1 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 21 3 17 10 5 2 4 6 3 9 2 4 12 16 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 10 3 5 8 20 3 1 7 2 0 0 0 0 1 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
127 154 196 134
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
73 176 119 243
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
43 228 177 163
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 31 (17.92%)
Alanine (Ala, A)
n = 14 (8.09%)
Serine (Ser, S)
n = 11 (6.36%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 24 (13.87%)
Leucine (Leu, L)
n = 34 (19.65%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 7 (4.05%)
Tyrosine (Tyr, Y)
n = 7 (4.05%)
Tryptophan (Trp, W)
n = 6 (3.47%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 5 (2.89%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 6 (3.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 3 2 0 2 1 17 0 0 4 5 7 8 7 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 3 0 5 0 6 3 7 5 6 13 1 1 2 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 1 0 4 1 0 4 2 0 5 2 3 12 1 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 3 2 1 1 0 0 0 2 4 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 16 19 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 33 19 74
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
56 18 53 47
Total protein-coding genes (size: 11433 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 240 (6.3%)
Alanine (Ala, A)
n = 325 (8.53%)
Serine (Ser, S)
n = 252 (6.62%)
Threonine (Thr, T)
n = 314 (8.25%)
Cysteine (Cys, C)
n = 31 (0.81%)
Valine (Val, V)
n = 199 (5.23%)
Leucine (Leu, L)
n = 674 (17.7%)
Isoleucine (Ile, I)
n = 257 (6.75%)
Methionine (Met, M)
n = 153 (4.02%)
Proline (Pro, P)
n = 223 (5.86%)
Phenylalanine (Phe, F)
n = 253 (6.64%)
Tyrosine (Tyr, Y)
n = 110 (2.89%)
Tryptophan (Trp, W)
n = 119 (3.13%)
Aspartic acid (Asp, D)
n = 76 (2.0%)
Glutamic acid (Glu, E)
n = 95 (2.49%)
Asparagine (Asn, N)
n = 123 (3.23%)
Glutamine (Gln, Q)
n = 95 (2.49%)
Histidine (His, H)
n = 106 (2.78%)
Lysine (Lys, K)
n = 78 (2.05%)
Arginine (Arg, R)
n = 77 (2.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
146 111 106 185 144 173 41 105 79 16 58 51 65 25 133 120
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
47 10 21 62 146 105 12 29 96 72 43 55 103 55 10 57
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
133 113 11 60 79 52 8 18 35 44 66 21 26 40 83 36
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
70 72 23 30 46 69 9 12 23 32 10 1 0 6 2 98
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
935 1044 979 851
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
521 1061 691 1536
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
304 1327 1203 975 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​G​a​m​b​u​s​i​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ a​f​f​i​n​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.