Viewing data for Tomistoma schlegelii


Scientific name Tomistoma schlegelii
Common name False gharial
Maximum lifespan 24.70 years (Tomistoma schlegelii@AnAge)

Total mtDNA (size: 16345 bases) GC AT G C A T
Base content (bases) 6815 9530 4519 2296 4415 5115
Base content per 1 kb (bases) 417 583 276 140 270 313
Base content (%) 41.7% 58.3%
Total protein-coding genes (size: 11395 bases) GC AT G C A T
Base content (bases) 4809 6586 3317 1492 3137 3449
Base content per 1 kb (bases) 422 578 291 131 275 303
Base content (%) 42.2% 57.8%
D-loop (size: 1023 bases) GC AT G C A T
Base content (bases) 285 738 186 99 368 370
Base content per 1 kb (bases) 279 721 182 97 360 362
Base content (%) 27.9% 72.1%
Total tRNA-coding genes (size: 1541 bases) GC AT G C A T
Base content (bases) 668 873 388 280 378 495
Base content per 1 kb (bases) 433 567 252 182 245 321
Base content (%) 43.3% 56.7%
Total rRNA-coding genes (size: 2152 bases) GC AT G C A T
Base content (bases) 965 1187 550 415 471 716
Base content per 1 kb (bases) 448 552 256 193 219 333
Base content (%) 44.8% 55.2%
12S rRNA gene (size: 547 bases) GC AT G C A T
Base content (bases) 256 291 140 116 117 174
Base content per 1 kb (bases) 468 532 256 212 214 318
Base content (%) 46.8% 53.2%
16S rRNA gene (size: 1605 bases) GC AT G C A T
Base content (bases) 709 896 410 299 354 542
Base content per 1 kb (bases) 442 558 255 186 221 338
Base content (%) 44.2% 55.8%

ATP6 (size: 696 bases) GC AT G C A T
Base content (bases) 268 428 193 75 201 227
Base content per 1 kb (bases) 385 615 277 108 289 326
Base content (%) 38.5% 61.5%
ATP8 (size: 162 bases) GC AT G C A T
Base content (bases) 63 99 51 12 46 53
Base content per 1 kb (bases) 389 611 315 74 284 327
Base content (%) 38.9% 61.1%
COX1 (size: 1584 bases) GC AT G C A T
Base content (bases) 677 907 431 246 437 470
Base content per 1 kb (bases) 427 573 272 155 276 297
Base content (%) 42.7% 57.3%
COX2 (size: 688 bases) GC AT G C A T
Base content (bases) 286 402 184 102 177 225
Base content per 1 kb (bases) 416 584 267 148 257 327
Base content (%) 41.6% 58.4%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 364 420 240 124 198 222
Base content per 1 kb (bases) 464 536 306 158 253 283
Base content (%) 46.4% 53.6%
CYTB (size: 1165 bases) GC AT G C A T
Base content (bases) 516 649 376 140 308 341
Base content per 1 kb (bases) 443 557 323 120 264 293
Base content (%) 44.3% 55.7%
ND1 (size: 963 bases) GC AT G C A T
Base content (bases) 394 569 265 129 285 284
Base content per 1 kb (bases) 409 591 275 134 296 295
Base content (%) 40.9% 59.1%
ND2 (size: 1044 bases) GC AT G C A T
Base content (bases) 439 605 324 115 291 314
Base content per 1 kb (bases) 420 580 310 110 279 301
Base content (%) 42.0% 58.0%
ND3 (size: 348 bases) GC AT G C A T
Base content (bases) 136 212 83 53 112 100
Base content per 1 kb (bases) 391 609 239 152 322 287
Base content (%) 39.1% 60.9%
ND4 (size: 1371 bases) GC AT G C A T
Base content (bases) 559 812 392 167 395 417
Base content per 1 kb (bases) 408 592 286 122 288 304
Base content (%) 40.8% 59.2%
ND4L (size: 294 bases) GC AT G C A T
Base content (bases) 114 180 87 27 100 80
Base content per 1 kb (bases) 388 612 296 92 340 272
Base content (%) 38.8% 61.2%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 793 1046 540 253 493 553
Base content per 1 kb (bases) 431 569 294 138 268 301
Base content (%) 43.1% 56.9%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 237 291 174 63 105 186
Base content per 1 kb (bases) 449 551 330 119 199 352
Base content (%) 44.9% 55.1%

ATP6 (size: 696 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (2.6%)
Alanine (Ala, A)
n = 19 (8.23%)
Serine (Ser, S)
n = 11 (4.76%)
Threonine (Thr, T)
n = 24 (10.39%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.33%)
Leucine (Leu, L)
n = 60 (25.97%)
Isoleucine (Ile, I)
n = 21 (9.09%)
Methionine (Met, M)
n = 10 (4.33%)
Proline (Pro, P)
n = 17 (7.36%)
Phenylalanine (Phe, F)
n = 5 (2.16%)
Tyrosine (Tyr, Y)
n = 5 (2.16%)
Tryptophan (Trp, W)
n = 4 (1.73%)
Aspartic acid (Asp, D)
n = 2 (0.87%)
Glutamic acid (Glu, E)
n = 5 (2.16%)
Asparagine (Asn, N)
n = 12 (5.19%)
Glutamine (Gln, Q)
n = 7 (3.03%)
Histidine (His, H)
n = 4 (1.73%)
Lysine (Lys, K)
n = 5 (2.16%)
Arginine (Arg, R)
n = 4 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 7 8 8 5 24 4 16 4 3 1 0 7 2 4 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 2 12 5 0 1 1 4 0 3 1 13 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 13 1 3 5 1 0 0 2 2 3 2 3 7 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 5 0 1 1 5 0 0 0 4 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
42 73 74 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 69 41 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 51 112 52
ATP8 (size: 162 bases)
Amino acid sequence: MPQLNPKPWLMVFLTTWFMLIIVTHPKIASLKLLNSPVPFHPTPIKPWLWPQI*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.89%)
Serine (Ser, S)
n = 2 (3.77%)
Threonine (Thr, T)
n = 4 (7.55%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.66%)
Leucine (Leu, L)
n = 8 (15.09%)
Isoleucine (Ile, I)
n = 5 (9.43%)
Methionine (Met, M)
n = 3 (5.66%)
Proline (Pro, P)
n = 10 (18.87%)
Phenylalanine (Phe, F)
n = 3 (5.66%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 4 (7.55%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 2 (3.77%)
Glutamine (Gln, Q)
n = 2 (3.77%)
Histidine (His, H)
n = 2 (3.77%)
Lysine (Lys, K)
n = 4 (7.55%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 2 2 2 0 5 0 1 2 0 2 0 1 0 1 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 0 0 0 0 0 0 4 2 4 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 1 0 0 1 0 0 0 1 0 0 1 0 1 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 0 0 0 3 1 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
4 21 19 10
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 16 11 22
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 14 23 14
COX1 (size: 1584 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 44 (8.35%)
Alanine (Ala, A)
n = 38 (7.21%)
Serine (Ser, S)
n = 34 (6.45%)
Threonine (Thr, T)
n = 40 (7.59%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 34 (6.45%)
Leucine (Leu, L)
n = 56 (10.63%)
Isoleucine (Ile, I)
n = 42 (7.97%)
Methionine (Met, M)
n = 31 (5.88%)
Proline (Pro, P)
n = 35 (6.64%)
Phenylalanine (Phe, F)
n = 46 (8.73%)
Tyrosine (Tyr, Y)
n = 17 (3.23%)
Tryptophan (Trp, W)
n = 17 (3.23%)
Aspartic acid (Asp, D)
n = 15 (2.85%)
Glutamic acid (Glu, E)
n = 10 (1.9%)
Asparagine (Asn, N)
n = 21 (3.98%)
Glutamine (Gln, Q)
n = 9 (1.71%)
Histidine (His, H)
n = 17 (3.23%)
Lysine (Lys, K)
n = 11 (2.09%)
Arginine (Arg, R)
n = 9 (1.71%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 16 27 11 13 19 2 11 9 0 6 5 20 3 14 32
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 7 12 18 1 1 8 27 8 6 9 19 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 18 0 6 8 14 1 2 3 9 8 3 0 8 13 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 2 2 13 10 1 1 2 5 1 0 1 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
141 115 151 121
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 142 100 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 174 219 107
COX2 (size: 688 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 14 (6.14%)
Serine (Ser, S)
n = 18 (7.89%)
Threonine (Thr, T)
n = 18 (7.89%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 15 (6.58%)
Leucine (Leu, L)
n = 29 (12.72%)
Isoleucine (Ile, I)
n = 18 (7.89%)
Methionine (Met, M)
n = 16 (7.02%)
Proline (Pro, P)
n = 13 (5.7%)
Phenylalanine (Phe, F)
n = 8 (3.51%)
Tyrosine (Tyr, Y)
n = 9 (3.95%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 10 (4.39%)
Glutamic acid (Glu, E)
n = 12 (5.26%)
Asparagine (Asn, N)
n = 5 (2.19%)
Glutamine (Gln, Q)
n = 9 (3.95%)
Histidine (His, H)
n = 10 (4.39%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 5 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 7 15 4 7 16 2 0 7 2 5 1 8 1 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 3 0 3 3 7 1 1 0 6 1 0 2 9 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 10 0 1 6 3 2 4 2 5 4 0 0 1 4 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 10 2 4 6 3 1 2 2 0 1 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 66 67 37
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 57 59 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 61 99 53
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (6.92%)
Alanine (Ala, A)
n = 18 (6.92%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 23 (8.85%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 14 (5.38%)
Proline (Pro, P)
n = 15 (5.77%)
Phenylalanine (Phe, F)
n = 21 (8.08%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 6 (2.31%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 9 12 3 5 15 3 5 4 2 2 5 9 0 8 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 2 12 3 1 3 4 9 2 2 2 11 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 10 0 0 4 6 0 0 6 3 9 4 0 1 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 5 3 2 2 2 0 1 1 3 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 69 66 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 66 54 98
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 105 102 37
CYTB (size: 1165 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.46%)
Alanine (Ala, A)
n = 24 (6.2%)
Serine (Ser, S)
n = 27 (6.98%)
Threonine (Thr, T)
n = 28 (7.24%)
Cysteine (Cys, C)
n = 1 (0.26%)
Valine (Val, V)
n = 10 (2.58%)
Leucine (Leu, L)
n = 63 (16.28%)
Isoleucine (Ile, I)
n = 34 (8.79%)
Methionine (Met, M)
n = 21 (5.43%)
Proline (Pro, P)
n = 25 (6.46%)
Phenylalanine (Phe, F)
n = 27 (6.98%)
Tyrosine (Tyr, Y)
n = 16 (4.13%)
Tryptophan (Trp, W)
n = 13 (3.36%)
Aspartic acid (Asp, D)
n = 8 (2.07%)
Glutamic acid (Glu, E)
n = 6 (1.55%)
Asparagine (Asn, N)
n = 16 (4.13%)
Glutamine (Gln, Q)
n = 10 (2.58%)
Histidine (His, H)
n = 15 (3.88%)
Lysine (Lys, K)
n = 10 (2.58%)
Arginine (Arg, R)
n = 9 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 22 20 9 16 27 3 7 8 2 0 4 6 0 13 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 4 12 7 1 2 10 9 4 4 8 12 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 10 1 6 8 11 0 1 1 2 14 1 1 1 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 5 1 1 7 9 1 1 2 6 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 114 111 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 102 81 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 160 149 62
ND1 (size: 963 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.69%)
Alanine (Ala, A)
n = 27 (8.44%)
Serine (Ser, S)
n = 25 (7.81%)
Threonine (Thr, T)
n = 29 (9.06%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 14 (4.38%)
Leucine (Leu, L)
n = 63 (19.69%)
Isoleucine (Ile, I)
n = 23 (7.19%)
Methionine (Met, M)
n = 18 (5.63%)
Proline (Pro, P)
n = 18 (5.63%)
Phenylalanine (Phe, F)
n = 22 (6.88%)
Tyrosine (Tyr, Y)
n = 11 (3.44%)
Tryptophan (Trp, W)
n = 8 (2.5%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 10 (3.13%)
Asparagine (Asn, N)
n = 10 (3.13%)
Glutamine (Gln, Q)
n = 6 (1.88%)
Histidine (His, H)
n = 3 (0.94%)
Lysine (Lys, K)
n = 7 (2.19%)
Arginine (Arg, R)
n = 7 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 10 17 14 7 21 5 14 5 1 3 3 5 3 9 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 0 8 8 10 1 0 8 7 0 4 2 8 4 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 13 1 1 6 12 0 1 5 3 8 1 2 4 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 9 1 1 2 6 1 0 1 6 0 0 1 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 81 94 77
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 93 50 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 91 140 68
ND2 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (2.59%)
Alanine (Ala, A)
n = 30 (8.65%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 38 (10.95%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 16 (4.61%)
Leucine (Leu, L)
n = 66 (19.02%)
Isoleucine (Ile, I)
n = 28 (8.07%)
Methionine (Met, M)
n = 24 (6.92%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 21 (6.05%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 9 (2.59%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 7 (2.02%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 7 (2.02%)
Histidine (His, H)
n = 4 (1.15%)
Lysine (Lys, K)
n = 13 (3.75%)
Arginine (Arg, R)
n = 5 (1.44%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 14 18 8 13 25 4 15 6 1 3 5 7 1 7 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 5 17 7 1 1 5 3 0 2 7 10 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 13 2 2 14 7 1 0 5 3 4 0 1 1 11 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 6 1 2 0 10 3 0 0 4 1 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 85 120 79
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
29 111 53 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 128 141 57
ND3 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (2.59%)
Alanine (Ala, A)
n = 30 (8.65%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 38 (10.95%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 16 (4.61%)
Leucine (Leu, L)
n = 66 (19.02%)
Isoleucine (Ile, I)
n = 28 (8.07%)
Methionine (Met, M)
n = 24 (6.92%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 21 (6.05%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 9 (2.59%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 7 (2.02%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 7 (2.02%)
Histidine (His, H)
n = 4 (1.15%)
Lysine (Lys, K)
n = 13 (3.75%)
Arginine (Arg, R)
n = 5 (1.44%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 14 18 8 13 25 4 15 6 1 3 5 7 1 7 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 5 17 7 1 1 5 3 0 2 7 10 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 13 2 2 14 7 1 0 5 3 4 0 1 1 11 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 6 1 2 0 10 3 0 0 4 1 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 85 120 79
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
29 111 53 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 128 141 57
ND4 (size: 1371 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (4.61%)
Alanine (Ala, A)
n = 29 (6.36%)
Serine (Ser, S)
n = 41 (8.99%)
Threonine (Thr, T)
n = 51 (11.18%)
Cysteine (Cys, C)
n = 6 (1.32%)
Valine (Val, V)
n = 19 (4.17%)
Leucine (Leu, L)
n = 96 (21.05%)
Isoleucine (Ile, I)
n = 28 (6.14%)
Methionine (Met, M)
n = 35 (7.68%)
Proline (Pro, P)
n = 24 (5.26%)
Phenylalanine (Phe, F)
n = 15 (3.29%)
Tyrosine (Tyr, Y)
n = 12 (2.63%)
Tryptophan (Trp, W)
n = 11 (2.41%)
Aspartic acid (Asp, D)
n = 7 (1.54%)
Glutamic acid (Glu, E)
n = 7 (1.54%)
Asparagine (Asn, N)
n = 10 (2.19%)
Glutamine (Gln, Q)
n = 16 (3.51%)
Histidine (His, H)
n = 11 (2.41%)
Lysine (Lys, K)
n = 8 (1.75%)
Arginine (Arg, R)
n = 9 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 9 31 12 17 40 8 19 15 1 5 4 9 1 10 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 5 6 17 5 1 6 3 11 1 3 4 15 2 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 23 2 10 11 9 2 3 6 8 4 4 0 6 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 1 3 4 8 0 1 2 5 1 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 137 141 96
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
56 136 72 193
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 119 204 106
ND4L (size: 294 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.12%)
Alanine (Ala, A)
n = 7 (7.22%)
Serine (Ser, S)
n = 9 (9.28%)
Threonine (Thr, T)
n = 12 (12.37%)
Cysteine (Cys, C)
n = 4 (4.12%)
Valine (Val, V)
n = 2 (2.06%)
Leucine (Leu, L)
n = 22 (22.68%)
Isoleucine (Ile, I)
n = 9 (9.28%)
Methionine (Met, M)
n = 3 (3.09%)
Proline (Pro, P)
n = 2 (2.06%)
Phenylalanine (Phe, F)
n = 7 (7.22%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.03%)
Aspartic acid (Asp, D)
n = 1 (1.03%)
Glutamic acid (Glu, E)
n = 2 (2.06%)
Asparagine (Asn, N)
n = 5 (5.15%)
Glutamine (Gln, Q)
n = 1 (1.03%)
Histidine (His, H)
n = 4 (4.12%)
Lysine (Lys, K)
n = 1 (1.03%)
Arginine (Arg, R)
n = 1 (1.03%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 2 3 3 6 6 0 7 1 0 0 0 2 0 6 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
0 2 2 1 5 1 0 0 3 1 0 0 2 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 4 0 2 2 4 0 1 0 0 0 0 0 4 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 0 0 1 1 0 0 1 0 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
16 23 31 28
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
11 29 15 43
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
0 35 34 29
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.9%)
Alanine (Ala, A)
n = 65 (10.62%)
Serine (Ser, S)
n = 44 (7.19%)
Threonine (Thr, T)
n = 42 (6.86%)
Cysteine (Cys, C)
n = 7 (1.14%)
Valine (Val, V)
n = 29 (4.74%)
Leucine (Leu, L)
n = 94 (15.36%)
Isoleucine (Ile, I)
n = 57 (9.31%)
Methionine (Met, M)
n = 33 (5.39%)
Proline (Pro, P)
n = 36 (5.88%)
Phenylalanine (Phe, F)
n = 33 (5.39%)
Tyrosine (Tyr, Y)
n = 19 (3.1%)
Tryptophan (Trp, W)
n = 8 (1.31%)
Aspartic acid (Asp, D)
n = 14 (2.29%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 23 (3.76%)
Glutamine (Gln, Q)
n = 16 (2.61%)
Histidine (His, H)
n = 13 (2.12%)
Lysine (Lys, K)
n = 26 (4.25%)
Arginine (Arg, R)
n = 11 (1.8%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 27 23 9 17 38 8 18 13 3 7 6 14 2 11 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 1 6 12 28 22 3 5 10 13 2 6 10 20 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 14 0 8 10 17 1 2 6 6 13 0 4 8 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 10 2 6 8 22 4 0 4 7 0 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
150 148 189 126
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
64 179 124 246
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 213 240 121
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (16.57%)
Alanine (Ala, A)
n = 13 (7.43%)
Serine (Ser, S)
n = 15 (8.57%)
Threonine (Thr, T)
n = 6 (3.43%)
Cysteine (Cys, C)
n = 3 (1.71%)
Valine (Val, V)
n = 21 (12.0%)
Leucine (Leu, L)
n = 27 (15.43%)
Isoleucine (Ile, I)
n = 7 (4.0%)
Methionine (Met, M)
n = 9 (5.14%)
Proline (Pro, P)
n = 1 (0.57%)
Phenylalanine (Phe, F)
n = 12 (6.86%)
Tyrosine (Tyr, Y)
n = 6 (3.43%)
Tryptophan (Trp, W)
n = 5 (2.86%)
Aspartic acid (Asp, D)
n = 5 (2.86%)
Glutamic acid (Glu, E)
n = 4 (2.29%)
Asparagine (Asn, N)
n = 1 (0.57%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 3 (1.71%)
Lysine (Lys, K)
n = 3 (1.71%)
Arginine (Arg, R)
n = 5 (2.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 2 6 3 0 3 5 10 0 0 6 0 12 3 10 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 3 0 3 5 3 2 8 3 4 14 0 0 1 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 1 1 0 3 1 7 3 6 0 3 6 1 0 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 4 4 1 1 2 1 0 0 4 0 1 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 20 37 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 25 22 76
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
49 18 46 63
Total protein-coding genes (size: 11466 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 214 (5.6%)
Alanine (Ala, A)
n = 300 (7.85%)
Serine (Ser, S)
n = 275 (7.2%)
Threonine (Thr, T)
n = 322 (8.43%)
Cysteine (Cys, C)
n = 30 (0.79%)
Valine (Val, V)
n = 191 (5.0%)
Leucine (Leu, L)
n = 637 (16.68%)
Isoleucine (Ile, I)
n = 298 (7.8%)
Methionine (Met, M)
n = 225 (5.89%)
Proline (Pro, P)
n = 221 (5.79%)
Phenylalanine (Phe, F)
n = 230 (6.02%)
Tyrosine (Tyr, Y)
n = 116 (3.04%)
Tryptophan (Trp, W)
n = 101 (2.64%)
Aspartic acid (Asp, D)
n = 74 (1.94%)
Glutamic acid (Glu, E)
n = 90 (2.36%)
Asparagine (Asn, N)
n = 125 (3.27%)
Glutamine (Gln, Q)
n = 91 (2.38%)
Histidine (His, H)
n = 103 (2.7%)
Lysine (Lys, K)
n = 96 (2.51%)
Arginine (Arg, R)
n = 72 (1.88%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
167 131 190 89 109 246 47 129 76 15 40 33 102 16 106 124
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
35 12 18 58 136 92 14 31 56 95 32 35 52 123 11 53
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
128 133 8 40 76 90 8 21 40 48 68 20 17 44 81 23
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
80 73 17 27 47 81 15 7 15 42 8 0 3 6 1 81
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
869 978 1130 844
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
481 1057 702 1581
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
267 1194 1559 801 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​o​m​i​s​t​o​m​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ s​c​h​l​e​g​e​l​i​i​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.