Viewing data for Papio hamadryas


Scientific name Papio hamadryas
Common name Hamadryas baboon
Maximum lifespan 37.50 years (Papio hamadryas@AnAge)

Total mtDNA (size: 16521 bases) GC AT G C A T
Base content (bases) 7216 9305 5047 2169 4110 5195
Base content per 1 kb (bases) 437 563 305 131 249 314
Base content (%) 43.7% 56.3%
Total protein-coding genes (size: 11342 bases) GC AT G C A T
Base content (bases) 4998 6344 3679 1319 2856 3488
Base content per 1 kb (bases) 441 559 324 116 252 308
Base content (%) 44.1% 55.9%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1498 bases) GC AT G C A T
Base content (bases) 595 903 357 238 392 511
Base content per 1 kb (bases) 397 603 238 159 262 341
Base content (%) 39.7% 60.3%
Total rRNA-coding genes (size: 2517 bases) GC AT G C A T
Base content (bases) 1089 1428 640 449 568 860
Base content per 1 kb (bases) 433 567 254 178 226 342
Base content (%) 43.3% 56.7%
12S rRNA gene (size: 947 bases) GC AT G C A T
Base content (bases) 425 522 247 178 211 311
Base content per 1 kb (bases) 449 551 261 188 223 328
Base content (%) 44.9% 55.1%
16S rRNA gene (size: 1570 bases) GC AT G C A T
Base content (bases) 664 906 393 271 357 549
Base content per 1 kb (bases) 423 577 250 173 227 350
Base content (%) 42.3% 57.7%

ATP6 (size: 680 bases) GC AT G C A T
Base content (bases) 300 380 236 64 161 219
Base content per 1 kb (bases) 441 559 347 94 237 322
Base content (%) 44.1% 55.9%
ATP8 (size: 207 bases) GC AT G C A T
Base content (bases) 86 121 70 16 45 76
Base content per 1 kb (bases) 415 585 338 77 217 367
Base content (%) 41.5% 58.5%
COX1 (size: 1542 bases) GC AT G C A T
Base content (bases) 694 848 439 255 447 401
Base content per 1 kb (bases) 450 550 285 165 290 260
Base content (%) 45.0% 55.0%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 298 386 202 96 172 214
Base content per 1 kb (bases) 436 564 295 140 251 313
Base content (%) 43.6% 56.4%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 353 431 245 108 219 212
Base content per 1 kb (bases) 450 550 313 138 279 270
Base content (%) 45.0% 55.0%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 523 618 384 139 282 336
Base content per 1 kb (bases) 458 542 337 122 247 294
Base content (%) 45.8% 54.2%
ND1 (size: 955 bases) GC AT G C A T
Base content (bases) 422 533 318 104 244 289
Base content per 1 kb (bases) 442 558 333 109 255 303
Base content (%) 44.2% 55.8%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 443 602 356 87 245 357
Base content per 1 kb (bases) 424 576 341 83 234 342
Base content (%) 42.4% 57.6%
ND3 (size: 345 bases) GC AT G C A T
Base content (bases) 152 193 109 43 88 105
Base content per 1 kb (bases) 441 559 316 125 255 304
Base content (%) 44.1% 55.9%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 598 780 461 137 344 436
Base content per 1 kb (bases) 434 566 335 99 250 316
Base content (%) 43.4% 56.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 131 166 91 40 82 84
Base content per 1 kb (bases) 441 559 306 135 276 283
Base content (%) 44.1% 55.9%
ND5 (size: 1812 bases) GC AT G C A T
Base content (bases) 789 1023 598 191 454 569
Base content per 1 kb (bases) 435 565 330 105 251 314
Base content (%) 43.5% 56.5%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 229 296 185 44 87 209
Base content per 1 kb (bases) 436 564 352 84 166 398
Base content (%) 43.6% 56.4%

ATP6 (size: 680 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.56%)
Alanine (Ala, A)
n = 15 (6.67%)
Serine (Ser, S)
n = 12 (5.33%)
Threonine (Thr, T)
n = 31 (13.78%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (3.11%)
Leucine (Leu, L)
n = 46 (20.44%)
Isoleucine (Ile, I)
n = 22 (9.78%)
Methionine (Met, M)
n = 16 (7.11%)
Proline (Pro, P)
n = 14 (6.22%)
Phenylalanine (Phe, F)
n = 8 (3.56%)
Tyrosine (Tyr, Y)
n = 2 (0.89%)
Tryptophan (Trp, W)
n = 2 (0.89%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 15 (6.67%)
Glutamine (Gln, Q)
n = 10 (4.44%)
Histidine (His, H)
n = 7 (3.11%)
Lysine (Lys, K)
n = 6 (2.67%)
Arginine (Arg, R)
n = 2 (0.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 17 13 4 9 24 5 4 8 2 2 2 2 1 4 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 3 8 3 1 2 2 3 1 1 7 5 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 8 2 4 3 4 0 0 1 0 2 1 0 1 14 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 1 0 0 6 0 0 1 1 0 0 0 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
33 75 91 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 71 43 99
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 90 84 34
ATP8 (size: 207 bases)
Amino acid sequence: MPQLDTSTWFTIIMAMLPTLYLITQLKLLSMNYYQPPLTKNPNLQTHNTCWRPKWTKTYLPHSQPQQS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.47%)
Serine (Ser, S)
n = 4 (5.88%)
Threonine (Thr, T)
n = 10 (14.71%)
Cysteine (Cys, C)
n = 1 (1.47%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 10 (14.71%)
Isoleucine (Ile, I)
n = 3 (4.41%)
Methionine (Met, M)
n = 4 (5.88%)
Proline (Pro, P)
n = 8 (11.76%)
Phenylalanine (Phe, F)
n = 1 (1.47%)
Tyrosine (Tyr, Y)
n = 4 (5.88%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 1 (1.47%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 4 (5.88%)
Glutamine (Gln, Q)
n = 7 (10.29%)
Histidine (His, H)
n = 2 (2.94%)
Lysine (Lys, K)
n = 4 (5.88%)
Arginine (Arg, R)
n = 1 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 3 2 1 2 2 3 5 2 0 0 0 0 0 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 0 0 0 1 0 0 0 0 0 2 5 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 5 1 1 2 0 0 0 1 2 2 0 0 0 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 0 0 1 4 0 0 0 0 1 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
2 25 26 16
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 22 23 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 23 27 11
COX1 (size: 1542 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.16%)
Alanine (Ala, A)
n = 38 (7.41%)
Serine (Ser, S)
n = 34 (6.63%)
Threonine (Thr, T)
n = 36 (7.02%)
Cysteine (Cys, C)
n = 2 (0.39%)
Valine (Val, V)
n = 29 (5.65%)
Leucine (Leu, L)
n = 63 (12.28%)
Isoleucine (Ile, I)
n = 44 (8.58%)
Methionine (Met, M)
n = 30 (5.85%)
Proline (Pro, P)
n = 30 (5.85%)
Phenylalanine (Phe, F)
n = 41 (7.99%)
Tyrosine (Tyr, Y)
n = 18 (3.51%)
Tryptophan (Trp, W)
n = 16 (3.12%)
Aspartic acid (Asp, D)
n = 14 (2.73%)
Glutamic acid (Glu, E)
n = 9 (1.75%)
Asparagine (Asn, N)
n = 18 (3.51%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 21 (4.09%)
Lysine (Lys, K)
n = 10 (1.95%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 21 21 5 10 31 7 9 5 1 7 10 9 3 19 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 1 1 5 21 10 2 11 15 12 9 11 13 5 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 16 2 7 11 10 1 2 3 8 10 3 1 7 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 8 1 4 10 10 0 2 3 3 0 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
137 118 143 116
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 133 96 207
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
40 188 162 124
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 13 (5.73%)
Serine (Ser, S)
n = 12 (5.29%)
Threonine (Thr, T)
n = 22 (9.69%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 32 (14.1%)
Isoleucine (Ile, I)
n = 21 (9.25%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 9 (3.96%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 16 9 3 4 14 3 8 8 0 2 5 2 4 6 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 1 8 3 1 2 4 4 1 3 5 8 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 11 1 2 4 4 0 0 2 3 6 0 0 2 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 9 2 2 7 4 0 1 2 3 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 58 68 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 61 54 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 83 92 39
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (6.92%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 26 (10.0%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 12 (4.62%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 20 (7.69%)
Methionine (Met, M)
n = 6 (2.31%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 13 (5.0%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 6 (2.31%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 6 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 9 5 6 7 12 3 7 8 0 2 5 5 0 10 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 3 9 3 0 3 7 6 2 2 6 5 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 14 1 3 4 5 1 1 5 4 9 2 0 2 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 6 0 1 2 3 0 1 2 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 71 66 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 67 54 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 107 92 52
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (5.8%)
Alanine (Ala, A)
n = 23 (6.07%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 34 (8.97%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 17 (4.49%)
Leucine (Leu, L)
n = 62 (16.36%)
Isoleucine (Ile, I)
n = 31 (8.18%)
Methionine (Met, M)
n = 18 (4.75%)
Proline (Pro, P)
n = 27 (7.12%)
Phenylalanine (Phe, F)
n = 22 (5.8%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 3 (0.79%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 10 (2.64%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 7 (1.85%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 28 16 11 13 27 4 7 9 1 2 4 11 0 5 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 2 11 10 0 0 15 6 1 4 7 14 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 11 1 3 9 9 1 0 3 4 10 2 0 8 10 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 2 1 1 10 9 1 0 3 4 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 110 114 80
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
47 106 77 150
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 168 145 51
ND1 (size: 955 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 25 (7.89%)
Serine (Ser, S)
n = 29 (9.15%)
Threonine (Thr, T)
n = 32 (10.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 6 (1.89%)
Leucine (Leu, L)
n = 60 (18.93%)
Isoleucine (Ile, I)
n = 24 (7.57%)
Methionine (Met, M)
n = 19 (5.99%)
Proline (Pro, P)
n = 21 (6.62%)
Phenylalanine (Phe, F)
n = 20 (6.31%)
Tyrosine (Tyr, Y)
n = 11 (3.47%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 13 (4.1%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 3 (0.95%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 7 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 16 16 6 18 31 3 2 6 0 2 2 2 0 8 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 3 12 8 2 1 5 5 1 5 10 4 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 18 0 3 8 12 0 3 3 3 8 1 0 1 12 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 2 1 6 1 0 2 5 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 95 101 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 101 54 129
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 122 134 49
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.03%)
Alanine (Ala, A)
n = 16 (4.61%)
Serine (Ser, S)
n = 26 (7.49%)
Threonine (Thr, T)
n = 60 (17.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 5 (1.44%)
Leucine (Leu, L)
n = 60 (17.29%)
Isoleucine (Ile, I)
n = 36 (10.37%)
Methionine (Met, M)
n = 21 (6.05%)
Proline (Pro, P)
n = 21 (6.05%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 11 (3.17%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 21 (6.05%)
Glutamine (Gln, Q)
n = 10 (2.88%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 10 (2.88%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 27 20 1 19 26 5 9 9 1 1 2 2 0 3 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 4 5 7 0 2 6 4 2 3 8 10 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 26 4 5 10 8 0 0 3 3 8 2 0 4 17 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 0 0 0 8 2 0 3 0 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 92 151 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 120 64 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 144 142 45
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.03%)
Alanine (Ala, A)
n = 16 (4.61%)
Serine (Ser, S)
n = 26 (7.49%)
Threonine (Thr, T)
n = 60 (17.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 5 (1.44%)
Leucine (Leu, L)
n = 60 (17.29%)
Isoleucine (Ile, I)
n = 36 (10.37%)
Methionine (Met, M)
n = 21 (6.05%)
Proline (Pro, P)
n = 21 (6.05%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 11 (3.17%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 21 (6.05%)
Glutamine (Gln, Q)
n = 10 (2.88%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 10 (2.88%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 27 20 1 19 26 5 9 9 1 1 2 2 0 3 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 4 5 7 0 2 6 4 2 3 8 10 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 26 4 5 10 8 0 0 3 3 8 2 0 4 17 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 0 0 0 8 2 0 3 0 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 92 151 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 120 64 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 144 142 45
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 26 (5.68%)
Serine (Ser, S)
n = 38 (8.3%)
Threonine (Thr, T)
n = 57 (12.45%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 10 (2.18%)
Leucine (Leu, L)
n = 90 (19.65%)
Isoleucine (Ile, I)
n = 34 (7.42%)
Methionine (Met, M)
n = 33 (7.21%)
Proline (Pro, P)
n = 24 (5.24%)
Phenylalanine (Phe, F)
n = 20 (4.37%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 5 (1.09%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 20 (4.37%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 15 (3.28%)
Lysine (Lys, K)
n = 13 (2.84%)
Arginine (Arg, R)
n = 8 (1.75%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 24 30 14 23 38 4 11 8 2 2 2 6 0 8 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 4 11 9 2 2 8 6 1 1 15 8 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 24 2 6 13 7 2 0 10 3 12 1 0 3 17 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 9 0 0 5 11 2 1 2 4 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 136 167 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 135 87 187
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 190 182 67
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 10 (10.2%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 6 (6.12%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 18 (18.37%)
Isoleucine (Ile, I)
n = 10 (10.2%)
Methionine (Met, M)
n = 11 (11.22%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 3 (3.06%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 6 8 1 5 6 4 2 1 0 2 0 1 1 2 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 1 4 4 1 0 2 2 0 1 2 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 2 0 1 2 4 1 0 1 1 1 0 0 1 5 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 25 34 19
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 27 17 46
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 39 33 17
ND5 (size: 1812 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (3.81%)
Alanine (Ala, A)
n = 43 (7.13%)
Serine (Ser, S)
n = 45 (7.46%)
Threonine (Thr, T)
n = 65 (10.78%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 14 (2.32%)
Leucine (Leu, L)
n = 99 (16.42%)
Isoleucine (Ile, I)
n = 55 (9.12%)
Methionine (Met, M)
n = 39 (6.47%)
Proline (Pro, P)
n = 33 (5.47%)
Phenylalanine (Phe, F)
n = 36 (5.97%)
Tyrosine (Tyr, Y)
n = 17 (2.82%)
Tryptophan (Trp, W)
n = 13 (2.16%)
Aspartic acid (Asp, D)
n = 12 (1.99%)
Glutamic acid (Glu, E)
n = 9 (1.49%)
Asparagine (Asn, N)
n = 32 (5.31%)
Glutamine (Gln, Q)
n = 20 (3.32%)
Histidine (His, H)
n = 15 (2.49%)
Lysine (Lys, K)
n = 21 (3.48%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 29 36 12 32 38 4 13 17 3 2 2 6 4 12 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 4 6 30 7 0 2 12 6 3 5 12 14 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
31 26 1 6 11 14 0 4 10 5 12 5 0 4 28 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 9 0 1 11 18 3 0 5 3 0 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 162 226 115
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
62 172 127 243
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 264 216 96
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (15.52%)
Alanine (Ala, A)
n = 9 (5.17%)
Serine (Ser, S)
n = 9 (5.17%)
Threonine (Thr, T)
n = 6 (3.45%)
Cysteine (Cys, C)
n = 2 (1.15%)
Valine (Val, V)
n = 30 (17.24%)
Leucine (Leu, L)
n = 20 (11.49%)
Isoleucine (Ile, I)
n = 8 (4.6%)
Methionine (Met, M)
n = 12 (6.9%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 11 (6.32%)
Tyrosine (Tyr, Y)
n = 10 (5.75%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 5 (2.87%)
Glutamic acid (Glu, E)
n = 9 (5.17%)
Asparagine (Asn, N)
n = 4 (2.3%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 3 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 0 4 0 0 1 4 5 0 0 15 1 5 9 11 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 1 4 0 1 4 14 1 1 11 2 1 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 1 3 1 1 1 3 0 7 3 5 10 4 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 7 5 0 0 1 1 0 0 2 0 1 0 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 11 35 49
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 24 29 81
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
64 9 23 79
Total protein-coding genes (size: 11395 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 205 (5.4%)
Alanine (Ala, A)
n = 245 (6.46%)
Serine (Ser, S)
n = 267 (7.04%)
Threonine (Thr, T)
n = 396 (10.43%)
Cysteine (Cys, C)
n = 23 (0.61%)
Valine (Val, V)
n = 149 (3.93%)
Leucine (Leu, L)
n = 619 (16.31%)
Isoleucine (Ile, I)
n = 318 (8.38%)
Methionine (Met, M)
n = 225 (5.93%)
Proline (Pro, P)
n = 220 (5.8%)
Phenylalanine (Phe, F)
n = 216 (5.69%)
Tyrosine (Tyr, Y)
n = 129 (3.4%)
Tryptophan (Trp, W)
n = 102 (2.69%)
Aspartic acid (Asp, D)
n = 67 (1.77%)
Glutamic acid (Glu, E)
n = 81 (2.13%)
Asparagine (Asn, N)
n = 170 (4.48%)
Glutamine (Gln, Q)
n = 99 (2.61%)
Histidine (His, H)
n = 105 (2.77%)
Lysine (Lys, K)
n = 93 (2.45%)
Arginine (Arg, R)
n = 61 (1.61%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
117 201 186 68 143 262 53 82 87 12 39 37 51 22 91 125
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
39 6 17 39 123 70 13 39 77 55 34 41 94 77 8 60
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
151 169 16 44 81 79 7 13 43 43 86 22 11 37 133 21
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
84 67 14 17 50 81 12 6 25 26 4 1 1 3 1 80
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
747 1011 1260 778
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
449 1072 748 1527
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
269 1470 1376 681 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​a​p​i​o​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ h​a​m​a​d​r​y​a​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.