Viewing data for Leiothrix lutea


Scientific name Leiothrix lutea
Common name Red-billed leothrix
Maximum lifespan 15.00 years (Leiothrix lutea@AnAge)

Total mtDNA (size: 17615 bases) GC AT G C A T
Base content (bases) 8111 9504 5582 2529 4250 5254
Base content per 1 kb (bases) 460 540 317 144 241 298
Base content (%) 46.0% 54.0%
Total protein-coding genes (size: 11378 bases) GC AT G C A T
Base content (bases) 5309 6069 3849 1460 2711 3358
Base content per 1 kb (bases) 467 533 338 128 238 295
Base content (%) 46.7% 53.3%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1538 bases) GC AT G C A T
Base content (bases) 642 896 374 268 390 506
Base content per 1 kb (bases) 417 583 243 174 254 329
Base content (%) 41.7% 58.3%
Total rRNA-coding genes (size: 2587 bases) GC AT G C A T
Base content (bases) 1194 1393 667 527 549 844
Base content per 1 kb (bases) 462 538 258 204 212 326
Base content (%) 46.2% 53.8%
12S rRNA gene (size: 985 bases) GC AT G C A T
Base content (bases) 479 506 266 213 202 304
Base content per 1 kb (bases) 486 514 270 216 205 309
Base content (%) 48.6% 51.4%
16S rRNA gene (size: 1602 bases) GC AT G C A T
Base content (bases) 715 887 401 314 347 540
Base content per 1 kb (bases) 446 554 250 196 217 337
Base content (%) 44.6% 55.4%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 307 377 240 67 175 202
Base content per 1 kb (bases) 449 551 351 98 256 295
Base content (%) 44.9% 55.1%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 73 95 61 12 40 55
Base content per 1 kb (bases) 435 565 363 71 238 327
Base content (%) 43.5% 56.5%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 744 807 478 266 384 423
Base content per 1 kb (bases) 480 520 308 172 248 273
Base content (%) 48.0% 52.0%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 314 370 212 102 151 219
Base content per 1 kb (bases) 459 541 310 149 221 320
Base content (%) 45.9% 54.1%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 385 399 265 120 189 210
Base content per 1 kb (bases) 491 509 338 153 241 268
Base content (%) 49.1% 50.9%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 532 611 378 154 290 321
Base content per 1 kb (bases) 465 535 331 135 254 281
Base content (%) 46.5% 53.5%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 481 497 338 143 249 248
Base content per 1 kb (bases) 492 508 346 146 255 254
Base content (%) 49.2% 50.8%
ND2 (size: 1040 bases) GC AT G C A T
Base content (bases) 467 573 355 112 250 323
Base content per 1 kb (bases) 449 551 341 108 240 311
Base content (%) 44.9% 55.1%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 170 181 124 46 83 98
Base content per 1 kb (bases) 484 516 353 131 236 279
Base content (%) 48.4% 51.6%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 625 753 482 143 328 425
Base content per 1 kb (bases) 454 546 350 104 238 308
Base content (%) 45.4% 54.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 154 143 116 38 69 74
Base content per 1 kb (bases) 519 481 391 128 232 249
Base content (%) 51.9% 48.1%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 810 1008 599 211 438 570
Base content per 1 kb (bases) 446 554 329 116 241 314
Base content (%) 44.6% 55.4%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 252 267 204 48 69 198
Base content per 1 kb (bases) 486 514 393 92 133 382
Base content (%) 48.6% 51.4%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 15 (6.61%)
Serine (Ser, S)
n = 15 (6.61%)
Threonine (Thr, T)
n = 24 (10.57%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.96%)
Leucine (Leu, L)
n = 60 (26.43%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 7 (3.08%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 12 (5.29%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 11 6 5 16 31 3 5 7 1 1 5 3 0 2 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 3 7 5 0 0 4 3 1 3 4 8 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 11 2 2 5 4 0 1 3 0 3 1 0 3 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 4 0 1 0 4 0 0 1 4 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
37 87 68 36
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
21 65 35 107
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 88 99 32
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFFIMIITWLTFSLIIQPKLLSFVTMNPPSSKAPTTYTTTPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (3.64%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 10 (18.18%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 5 (9.09%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 2 (3.64%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 5 1 0 1 4 0 0 2 0 0 0 1 0 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 1 1 0 0 0 0 0 0 2 2 5 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 3 0 0 2 1 0 0 1 0 1 0 0 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 16 23 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 24 8 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 21 24 8
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 48 (9.3%)
Serine (Ser, S)
n = 28 (5.43%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.17%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 41 (7.95%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 31 (6.01%)
Phenylalanine (Phe, F)
n = 43 (8.33%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 18 (3.49%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 9 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 30 18 5 11 37 6 2 8 1 6 10 16 5 7 36
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 10 20 18 0 9 11 21 6 6 9 15 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 17 3 6 10 8 0 0 4 1 16 1 0 1 14 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 10 0 1 14 9 0 1 3 5 0 0 1 0 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
157 126 130 104
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
79 139 93 206
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 213 200 74
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 17 (7.49%)
Serine (Ser, S)
n = 17 (7.49%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 17 (7.49%)
Leucine (Leu, L)
n = 30 (13.22%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 8 (3.52%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 12 (5.29%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 11 7 4 7 17 1 1 7 2 4 6 5 2 1 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 5 8 4 0 1 2 5 0 2 1 9 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 9 1 1 1 11 0 1 3 1 7 0 0 1 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 9 2 2 10 4 0 0 2 4 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 65 60 38
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 61 61 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 86 98 33
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 14 (5.38%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 6 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 13 7 7 6 17 2 0 6 1 2 6 7 0 3 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 2 10 9 0 1 10 8 1 1 7 5 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 9 0 2 5 4 0 1 4 1 10 0 0 1 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 6 1 3 3 4 0 0 2 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 76 57 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 67 55 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 122 98 34
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 27 (7.11%)
Serine (Ser, S)
n = 21 (5.53%)
Threonine (Thr, T)
n = 26 (6.84%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 22 (5.79%)
Leucine (Leu, L)
n = 67 (17.63%)
Isoleucine (Ile, I)
n = 32 (8.42%)
Methionine (Met, M)
n = 8 (2.11%)
Proline (Pro, P)
n = 24 (6.32%)
Phenylalanine (Phe, F)
n = 27 (7.11%)
Tyrosine (Tyr, Y)
n = 13 (3.42%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 8 (2.11%)
Glutamic acid (Glu, E)
n = 8 (2.11%)
Asparagine (Asn, N)
n = 21 (5.53%)
Glutamine (Gln, Q)
n = 7 (1.84%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 21 5 11 13 34 6 3 6 1 4 8 10 0 6 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 4 6 14 6 1 4 4 15 1 0 13 11 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 11 2 1 9 9 1 0 1 2 11 0 0 1 20 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 7 1 0 8 9 1 1 2 5 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
89 115 98 79
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 97 80 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 166 143 55
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.62%)
Alanine (Ala, A)
n = 34 (10.46%)
Serine (Ser, S)
n = 23 (7.08%)
Threonine (Thr, T)
n = 18 (5.54%)
Cysteine (Cys, C)
n = 3 (0.92%)
Valine (Val, V)
n = 14 (4.31%)
Leucine (Leu, L)
n = 68 (20.92%)
Isoleucine (Ile, I)
n = 22 (6.77%)
Methionine (Met, M)
n = 10 (3.08%)
Proline (Pro, P)
n = 26 (8.0%)
Phenylalanine (Phe, F)
n = 19 (5.85%)
Tyrosine (Tyr, Y)
n = 15 (4.62%)
Tryptophan (Trp, W)
n = 8 (2.46%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 10 (3.08%)
Asparagine (Asn, N)
n = 12 (3.69%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 8 (2.46%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 13 7 10 18 29 7 4 5 1 1 4 9 0 3 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 6 14 10 4 2 9 3 1 4 8 11 3 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 9 0 2 12 4 0 0 5 6 9 2 0 0 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 6 4 0 4 8 0 1 3 4 0 0 1 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 106 76 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 96 57 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 136 115 49
ND2 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 27 (7.83%)
Serine (Ser, S)
n = 32 (9.28%)
Threonine (Thr, T)
n = 47 (13.62%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 10 (2.9%)
Leucine (Leu, L)
n = 59 (17.1%)
Isoleucine (Ile, I)
n = 33 (9.57%)
Methionine (Met, M)
n = 19 (5.51%)
Proline (Pro, P)
n = 20 (5.8%)
Phenylalanine (Phe, F)
n = 15 (4.35%)
Tyrosine (Tyr, Y)
n = 6 (1.74%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 11 (3.19%)
Glutamine (Gln, Q)
n = 11 (3.19%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 28 16 5 16 25 5 8 10 1 2 3 4 1 1 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 4 11 10 2 1 3 4 4 6 8 6 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 19 1 4 10 10 2 2 4 1 5 3 0 0 11 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 0 1 1 12 1 1 1 2 0 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 95 129 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 120 56 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 140 137 46
ND3 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 27 (7.83%)
Serine (Ser, S)
n = 32 (9.28%)
Threonine (Thr, T)
n = 47 (13.62%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 10 (2.9%)
Leucine (Leu, L)
n = 59 (17.1%)
Isoleucine (Ile, I)
n = 33 (9.57%)
Methionine (Met, M)
n = 19 (5.51%)
Proline (Pro, P)
n = 20 (5.8%)
Phenylalanine (Phe, F)
n = 15 (4.35%)
Tyrosine (Tyr, Y)
n = 6 (1.74%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 11 (3.19%)
Glutamine (Gln, Q)
n = 11 (3.19%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 28 16 5 16 25 5 8 10 1 2 3 4 1 1 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 4 11 10 2 1 3 4 4 6 8 6 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 19 1 4 10 10 2 2 4 1 5 3 0 0 11 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 0 1 1 12 1 1 1 2 0 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 95 129 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 120 56 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 140 137 46
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 39 (8.52%)
Serine (Ser, S)
n = 37 (8.08%)
Threonine (Thr, T)
n = 40 (8.73%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 9 (1.97%)
Leucine (Leu, L)
n = 94 (20.52%)
Isoleucine (Ile, I)
n = 46 (10.04%)
Methionine (Met, M)
n = 30 (6.55%)
Proline (Pro, P)
n = 28 (6.11%)
Phenylalanine (Phe, F)
n = 13 (2.84%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 16 (3.49%)
Glutamine (Gln, Q)
n = 13 (2.84%)
Histidine (His, H)
n = 14 (3.06%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 12 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 36 26 7 27 50 1 8 10 3 4 2 3 0 1 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 3 4 21 14 0 2 8 7 0 4 10 14 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 15 0 4 12 11 1 1 8 3 11 1 1 3 13 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 1 0 3 9 1 2 1 9 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 152 151 79
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 135 79 192
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 195 195 56
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 10 (10.2%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 3 5 2 7 8 5 1 3 0 0 0 1 0 1 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 1 6 1 0 1 2 2 0 1 2 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 3 0 1 3 5 0 0 3 1 1 0 0 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 1 1 0 1 0 0 0 1 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
17 36 24 22
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 30 17 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 50 33 9
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 34 (5.62%)
Alanine (Ala, A)
n = 44 (7.27%)
Serine (Ser, S)
n = 49 (8.1%)
Threonine (Thr, T)
n = 60 (9.92%)
Cysteine (Cys, C)
n = 8 (1.32%)
Valine (Val, V)
n = 21 (3.47%)
Leucine (Leu, L)
n = 106 (17.52%)
Isoleucine (Ile, I)
n = 60 (9.92%)
Methionine (Met, M)
n = 28 (4.63%)
Proline (Pro, P)
n = 34 (5.62%)
Phenylalanine (Phe, F)
n = 32 (5.29%)
Tyrosine (Tyr, Y)
n = 14 (2.31%)
Tryptophan (Trp, W)
n = 13 (2.15%)
Aspartic acid (Asp, D)
n = 8 (1.32%)
Glutamic acid (Glu, E)
n = 10 (1.65%)
Asparagine (Asn, N)
n = 26 (4.3%)
Glutamine (Gln, Q)
n = 18 (2.98%)
Histidine (His, H)
n = 12 (1.98%)
Lysine (Lys, K)
n = 21 (3.47%)
Arginine (Arg, R)
n = 7 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 43 25 12 19 61 6 8 18 0 1 6 11 3 8 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 3 5 10 25 9 0 3 9 21 1 4 11 17 2 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
27 22 1 2 20 16 0 2 9 2 12 0 0 3 23 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 9 1 0 8 20 1 0 2 3 2 1 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
117 169 207 113
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
74 176 109 247
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 254 254 78
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (17.44%)
Alanine (Ala, A)
n = 12 (6.98%)
Serine (Ser, S)
n = 13 (7.56%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 35 (20.35%)
Leucine (Leu, L)
n = 29 (16.86%)
Isoleucine (Ile, I)
n = 3 (1.74%)
Methionine (Met, M)
n = 6 (3.49%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 10 (5.81%)
Tyrosine (Tyr, Y)
n = 8 (4.65%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 4 (2.33%)
Glutamic acid (Glu, E)
n = 2 (1.16%)
Asparagine (Asn, N)
n = 3 (1.74%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 4 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 0 2 2 0 1 3 8 0 0 10 1 5 19 10 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 4 1 3 4 5 1 7 17 2 0 1 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 1 5 0 3 2 3 0 7 1 4 15 3 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 2 4 0 1 0 0 0 0 4 0 1 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 14 19 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 28 18 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
77 6 32 58
Total protein-coding genes (size: 11395 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 225 (5.93%)
Alanine (Ala, A)
n = 303 (7.98%)
Serine (Ser, S)
n = 273 (7.19%)
Threonine (Thr, T)
n = 322 (8.48%)
Cysteine (Cys, C)
n = 30 (0.79%)
Valine (Val, V)
n = 193 (5.08%)
Leucine (Leu, L)
n = 661 (17.41%)
Isoleucine (Ile, I)
n = 307 (8.09%)
Methionine (Met, M)
n = 162 (4.27%)
Proline (Pro, P)
n = 228 (6.01%)
Phenylalanine (Phe, F)
n = 219 (5.77%)
Tyrosine (Tyr, Y)
n = 114 (3.0%)
Tryptophan (Trp, W)
n = 108 (2.85%)
Aspartic acid (Asp, D)
n = 67 (1.77%)
Glutamic acid (Glu, E)
n = 83 (2.19%)
Asparagine (Asn, N)
n = 133 (3.5%)
Glutamine (Gln, Q)
n = 97 (2.56%)
Histidine (His, H)
n = 102 (2.69%)
Lysine (Lys, K)
n = 87 (2.29%)
Arginine (Arg, R)
n = 73 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
85 222 127 71 151 326 48 49 86 11 35 51 77 30 47 172
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
35 4 26 57 142 93 11 29 65 99 32 35 79 105 9 55
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
126 130 11 31 92 87 6 11 46 25 89 12 16 16 117 21
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
81 68 15 13 54 82 5 6 18 43 6 1 3 6 0 96
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
871 1096 1072 758
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
497 1069 689 1542
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
250 1531 1475 541 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​L​e​i​o​t​h​r​i​x​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ l​u​t​e​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.