Viewing data for Pomatomus saltatrix
| Scientific name | Pomatomus saltatrix |
| Common name | Bluefish |
| Maximum lifespan | 9.00 years (Pomatomus saltatrix@AnAge) |
| Total mtDNA (size: 16544 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7472 | 9072 | 4726 | 2746 | 4417 | 4655 |
| Base content per 1 kb (bases) | 452 | 548 | 286 | 166 | 267 | 281 |
| Base content (%) | 45.2% | 54.8% | ||||
| Total protein-coding genes (size: 11416 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5190 | 6226 | 3448 | 1742 | 3193 | 3033 |
| Base content per 1 kb (bases) | 455 | 545 | 302 | 153 | 280 | 266 |
| Base content (%) | 45.5% | 54.5% | ||||
| D-loop (size: 855 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 298 | 557 | 186 | 112 | 265 | 292 |
| Base content per 1 kb (bases) | 349 | 651 | 218 | 131 | 310 | 342 |
| Base content (%) | 34.9% | 65.1% | ||||
| Total tRNA-coding genes (size: 1555 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 710 | 845 | 396 | 314 | 378 | 467 |
| Base content per 1 kb (bases) | 457 | 543 | 255 | 202 | 243 | 300 |
| Base content (%) | 45.7% | 54.3% | ||||
| Total rRNA-coding genes (size: 2664 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1252 | 1412 | 680 | 572 | 567 | 845 |
| Base content per 1 kb (bases) | 470 | 530 | 255 | 215 | 213 | 317 |
| Base content (%) | 47.0% | 53.0% | ||||
| 12S rRNA gene (size: 960 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 469 | 491 | 250 | 219 | 208 | 283 |
| Base content per 1 kb (bases) | 489 | 511 | 260 | 228 | 217 | 295 |
| Base content (%) | 48.9% | 51.1% | ||||
| 16S rRNA gene (size: 1704 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 783 | 921 | 430 | 353 | 359 | 562 |
| Base content per 1 kb (bases) | 460 | 540 | 252 | 207 | 211 | 330 |
| Base content (%) | 46.0% | 54.0% | ||||
| ATP6 (size: 683 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 308 | 375 | 208 | 100 | 198 | 177 |
| Base content per 1 kb (bases) | 451 | 549 | 305 | 146 | 290 | 259 |
| Base content (%) | 45.1% | 54.9% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 81 | 87 | 55 | 26 | 38 | 49 |
| Base content per 1 kb (bases) | 482 | 518 | 327 | 155 | 226 | 292 |
| Base content (%) | 48.2% | 51.8% | ||||
| COX1 (size: 1560 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 712 | 848 | 422 | 290 | 465 | 383 |
| Base content per 1 kb (bases) | 456 | 544 | 271 | 186 | 298 | 246 |
| Base content (%) | 45.6% | 54.4% | ||||
| COX2 (size: 691 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 302 | 389 | 193 | 109 | 190 | 199 |
| Base content per 1 kb (bases) | 437 | 563 | 279 | 158 | 275 | 288 |
| Base content (%) | 43.7% | 56.3% | ||||
| COX3 (size: 785 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 359 | 426 | 230 | 129 | 223 | 203 |
| Base content per 1 kb (bases) | 457 | 543 | 293 | 164 | 284 | 259 |
| Base content (%) | 45.7% | 54.3% | ||||
| CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 516 | 625 | 341 | 175 | 350 | 275 |
| Base content per 1 kb (bases) | 452 | 548 | 299 | 153 | 307 | 241 |
| Base content (%) | 45.2% | 54.8% | ||||
| ND1 (size: 975 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 464 | 511 | 313 | 151 | 272 | 239 |
| Base content per 1 kb (bases) | 476 | 524 | 321 | 155 | 279 | 245 |
| Base content (%) | 47.6% | 52.4% | ||||
| ND2 (size: 1046 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 498 | 548 | 360 | 138 | 266 | 282 |
| Base content per 1 kb (bases) | 476 | 524 | 344 | 132 | 254 | 270 |
| Base content (%) | 47.6% | 52.4% | ||||
| ND3 (size: 349 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 155 | 194 | 102 | 53 | 113 | 81 |
| Base content per 1 kb (bases) | 444 | 556 | 292 | 152 | 324 | 232 |
| Base content (%) | 44.4% | 55.6% | ||||
| ND4 (size: 1381 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 616 | 765 | 406 | 210 | 384 | 381 |
| Base content per 1 kb (bases) | 446 | 554 | 294 | 152 | 278 | 276 |
| Base content (%) | 44.6% | 55.4% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 141 | 156 | 99 | 42 | 89 | 67 |
| Base content per 1 kb (bases) | 475 | 525 | 333 | 141 | 300 | 226 |
| Base content (%) | 47.5% | 52.5% | ||||
| ND5 (size: 1839 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 816 | 1023 | 563 | 253 | 509 | 514 |
| Base content per 1 kb (bases) | 444 | 556 | 306 | 138 | 277 | 279 |
| Base content (%) | 44.4% | 55.6% | ||||
| ND6 (size: 522 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 230 | 292 | 160 | 70 | 101 | 191 |
| Base content per 1 kb (bases) | 441 | 559 | 307 | 134 | 193 | 366 |
| Base content (%) | 44.1% | 55.9% | ||||
| ATP6 (size: 683 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%) 
Alanine (Ala, A)
n = 19 (8.41%) 
Serine (Ser, S)
n = 6 (2.65%) 
Threonine (Thr, T)
n = 24 (10.62%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 13 (5.75%) 
Leucine (Leu, L)
n = 55 (24.34%) 
Isoleucine (Ile, I)
n = 15 (6.64%) 
Methionine (Met, M)
n = 12 (5.31%) 
Proline (Pro, P)
n = 17 (7.52%) 
Phenylalanine (Phe, F)
n = 13 (5.75%) 
Tyrosine (Tyr, Y)
n = 3 (1.33%) 
Tryptophan (Trp, W)
n = 5 (2.21%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 6 (2.65%) 
Asparagine (Asn, N)
n = 9 (3.98%) 
Glutamine (Gln, Q)
n = 7 (3.1%) 
Histidine (His, H)
n = 3 (1.33%) 
Lysine (Lys, K)
n = 1 (0.44%) 
Arginine (Arg, R)
n = 7 (3.1%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 4 | 3 | 12 | 14 | 15 | 7 | 5 | 4 | 3 | 7 | 2 | 2 | 2 | 5 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 9 | 0 | 0 | 5 | 5 | 9 | 0 | 3 | 7 | 1 | 0 | 4 | 2 | 11 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 15 | 0 | 1 | 1 | 1 | 0 | 0 | 3 | 2 | 1 | 1 | 2 | 3 | 6 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 6 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 50 | 82 | 64 | 31 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 63 | 30 | 108 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 24 | 63 | 82 | 58 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLDPAPWLSILLFSWLVFLTVLPPKVMAHNFPNEPTPKSADKPKGEAWNWPWH* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 4 (7.27%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 2 (3.64%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 1 (1.82%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 2 (3.64%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 1 (1.82%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 4 (7.27%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 0 | 1 | 0 | 2 | 3 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 3 | 3 | 4 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 2 | 0 | 0 | 3 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 1 | 1 | 1 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 12 | 19 | 13 | 12 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 7 | 18 | 15 | 16 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 7 | 18 | 21 | 10 | ||||||||||||
| COX1 (size: 1560 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.86%)
Alanine (Ala, A)
n = 52 (10.02%)
Serine (Ser, S)
n = 28 (5.39%)
Threonine (Thr, T)
n = 36 (6.94%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 42 (8.09%)
Leucine (Leu, L)
n = 60 (11.56%)
Isoleucine (Ile, I)
n = 41 (7.9%)
Methionine (Met, M)
n = 24 (4.62%)
Proline (Pro, P)
n = 27 (5.2%)
Phenylalanine (Phe, F)
n = 42 (8.09%)
Tyrosine (Tyr, Y)
n = 19 (3.66%)
Tryptophan (Trp, W)
n = 17 (3.28%)
Aspartic acid (Asp, D)
n = 15 (2.89%)
Glutamic acid (Glu, E)
n = 12 (2.31%)
Asparagine (Asn, N)
n = 14 (2.7%)
Glutamine (Gln, Q)
n = 6 (1.16%)
Histidine (His, H)
n = 20 (3.85%)
Lysine (Lys, K)
n = 8 (1.54%)
Arginine (Arg, R)
n = 9 (1.73%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 24 | 17 | 8 | 21 | 12 | 19 | 3 | 5 | 3 | 3 | 16 | 6 | 16 | 4 | 14 | 28 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 16 | 0 | 1 | 16 | 18 | 16 | 2 | 11 | 8 | 22 | 5 | 8 | 9 | 9 | 1 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 17 | 3 | 8 | 8 | 5 | 2 | 0 | 5 | 8 | 11 | 2 | 0 | 5 | 9 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 14 | 10 | 2 | 2 | 13 | 8 | 0 | 2 | 0 | 7 | 0 | 0 | 1 | 0 | 0 | 15 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 167 | 117 | 129 | 107 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 79 | 138 | 94 | 209 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 44 | 167 | 160 | 149 | ||||||||||||
| COX2 (size: 691 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 9 (3.93%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 18 (7.86%)
Leucine (Leu, L)
n = 27 (11.79%)
Isoleucine (Ile, I)
n = 23 (10.04%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 14 (6.11%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 11 | 6 | 12 | 6 | 5 | 3 | 1 | 8 | 0 | 4 | 4 | 9 | 1 | 1 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 1 | 1 | 7 | 1 | 9 | 0 | 0 | 3 | 4 | 2 | 6 | 5 | 3 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 3 | 1 | 1 | 7 | 6 | 0 | 0 | 3 | 2 | 7 | 1 | 0 | 3 | 2 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 13 | 1 | 3 | 10 | 5 | 0 | 1 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 71 | 64 | 55 | 40 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 54 | 64 | 87 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 75 | 80 | 62 | ||||||||||||
| COX3 (size: 785 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 24 (9.23%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 30 (11.54%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 7 (2.69%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 6 (2.31%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 6 | 4 | 7 | 6 | 13 | 0 | 4 | 6 | 1 | 6 | 5 | 6 | 0 | 10 | 15 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 2 | 6 | 11 | 6 | 1 | 3 | 5 | 10 | 3 | 2 | 4 | 6 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 13 | 0 | 2 | 5 | 4 | 0 | 1 | 2 | 2 | 10 | 0 | 0 | 1 | 0 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 8 | 0 | 2 | 5 | 2 | 0 | 1 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 77 | 68 | 50 | 66 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 69 | 54 | 94 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 93 | 98 | 62 | ||||||||||||
| CYTB (size: 1141 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 30 (7.92%)
Serine (Ser, S)
n = 21 (5.54%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 30 (7.92%)
Leucine (Leu, L)
n = 60 (15.83%)
Isoleucine (Ile, I)
n = 28 (7.39%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 34 (8.97%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 15 | 4 | 16 | 15 | 14 | 6 | 9 | 4 | 2 | 7 | 9 | 9 | 5 | 6 | 28 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 2 | 1 | 4 | 14 | 12 | 0 | 4 | 12 | 10 | 0 | 9 | 7 | 5 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 6 | 2 | 6 | 7 | 8 | 0 | 0 | 0 | 4 | 9 | 0 | 0 | 5 | 14 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 7 | 0 | 5 | 5 | 8 | 1 | 3 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 103 | 98 | 86 | 93 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 50 | 94 | 75 | 161 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 149 | 114 | 95 | ||||||||||||
| ND1 (size: 975 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.25%)
Alanine (Ala, A)
n = 37 (11.42%)
Serine (Ser, S)
n = 19 (5.86%)
Threonine (Thr, T)
n = 21 (6.48%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 19 (5.86%)
Leucine (Leu, L)
n = 63 (19.44%)
Isoleucine (Ile, I)
n = 24 (7.41%)
Methionine (Met, M)
n = 9 (2.78%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 19 (5.86%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 13 | 3 | 19 | 12 | 22 | 6 | 4 | 4 | 3 | 7 | 4 | 8 | 0 | 10 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 0 | 6 | 20 | 11 | 0 | 2 | 3 | 9 | 3 | 5 | 12 | 7 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 5 | 2 | 4 | 6 | 6 | 0 | 0 | 3 | 5 | 6 | 0 | 0 | 4 | 8 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 7 | 4 | 1 | 3 | 6 | 1 | 1 | 0 | 5 | 2 | 0 | 0 | 1 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 88 | 102 | 76 | 59 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 36 | 98 | 57 | 134 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 27 | 113 | 106 | 79 | ||||||||||||
| ND2 (size: 1046 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 39 (11.24%)
Serine (Ser, S)
n = 21 (6.05%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (3.17%)
Leucine (Leu, L)
n = 80 (23.05%)
Isoleucine (Ile, I)
n = 19 (5.48%)
Methionine (Met, M)
n = 15 (4.32%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 11 (3.17%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 11 (3.17%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 8 (2.31%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 9 | 9 | 19 | 21 | 23 | 4 | 11 | 11 | 2 | 2 | 4 | 3 | 2 | 4 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 0 | 4 | 23 | 10 | 2 | 4 | 7 | 6 | 1 | 6 | 6 | 11 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 19 | 12 | 4 | 5 | 8 | 3 | 0 | 0 | 5 | 2 | 5 | 2 | 2 | 7 | 4 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 6 | 0 | 1 | 0 | 9 | 0 | 1 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 75 | 115 | 100 | 58 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 119 | 55 | 136 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 25 | 126 | 126 | 71 | ||||||||||||
| ND3 (size: 1046 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 39 (11.24%)
Serine (Ser, S)
n = 21 (6.05%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (3.17%)
Leucine (Leu, L)
n = 80 (23.05%)
Isoleucine (Ile, I)
n = 19 (5.48%)
Methionine (Met, M)
n = 15 (4.32%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 11 (3.17%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 11 (3.17%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 8 (2.31%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 9 | 9 | 19 | 21 | 23 | 4 | 11 | 11 | 2 | 2 | 4 | 3 | 2 | 4 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 0 | 4 | 23 | 10 | 2 | 4 | 7 | 6 | 1 | 6 | 6 | 11 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 19 | 12 | 4 | 5 | 8 | 3 | 0 | 0 | 5 | 2 | 5 | 2 | 2 | 7 | 4 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 6 | 0 | 1 | 0 | 9 | 0 | 1 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 75 | 115 | 100 | 58 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 119 | 55 | 136 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 25 | 126 | 126 | 71 | ||||||||||||
| ND4 (size: 1381 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.88%)
Alanine (Ala, A)
n = 36 (7.84%)
Serine (Ser, S)
n = 30 (6.54%)
Threonine (Thr, T)
n = 43 (9.37%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 18 (3.92%)
Leucine (Leu, L)
n = 97 (21.13%)
Isoleucine (Ile, I)
n = 34 (7.41%)
Methionine (Met, M)
n = 26 (5.66%)
Proline (Pro, P)
n = 25 (5.45%)
Phenylalanine (Phe, F)
n = 14 (3.05%)
Tyrosine (Tyr, Y)
n = 15 (3.27%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 14 (3.05%)
Glutamine (Gln, Q)
n = 12 (2.61%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 9 (1.96%)
Arginine (Arg, R)
n = 11 (2.4%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 22 | 12 | 13 | 23 | 22 | 25 | 12 | 13 | 11 | 1 | 4 | 4 | 9 | 1 | 7 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 13 | 2 | 2 | 6 | 15 | 14 | 1 | 10 | 8 | 6 | 3 | 7 | 11 | 5 | 2 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 24 | 1 | 4 | 7 | 10 | 1 | 2 | 6 | 8 | 7 | 3 | 2 | 3 | 11 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 7 | 5 | 1 | 3 | 9 | 0 | 0 | 2 | 9 | 0 | 0 | 0 | 0 | 0 | 15 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 97 | 141 | 134 | 88 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 68 | 126 | 77 | 189 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 45 | 139 | 170 | 106 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 1 | 3 | 4 | 6 | 7 | 2 | 3 | 2 | 1 | 1 | 0 | 1 | 0 | 5 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 3 | 3 | 5 | 5 | 0 | 1 | 2 | 1 | 0 | 1 | 1 | 0 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 0 | 0 | 1 | 1 | 8 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 2 | 0 | 0 | 2 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 23 | 31 | 19 | 26 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 13 | 33 | 14 | 39 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 35 | 34 | 24 | ||||||||||||
| ND5 (size: 1839 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.23%)
Alanine (Ala, A)
n = 56 (9.15%)
Serine (Ser, S)
n = 42 (6.86%)
Threonine (Thr, T)
n = 59 (9.64%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 28 (4.58%)
Leucine (Leu, L)
n = 98 (16.01%)
Isoleucine (Ile, I)
n = 51 (8.33%)
Methionine (Met, M)
n = 29 (4.74%)
Proline (Pro, P)
n = 33 (5.39%)
Phenylalanine (Phe, F)
n = 39 (6.37%)
Tyrosine (Tyr, Y)
n = 9 (1.47%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 11 (1.8%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 30 (4.9%)
Glutamine (Gln, Q)
n = 19 (3.1%)
Histidine (His, H)
n = 15 (2.45%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 9 (1.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 30 | 21 | 18 | 22 | 23 | 37 | 4 | 11 | 13 | 6 | 12 | 5 | 7 | 4 | 13 | 26 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 11 | 2 | 4 | 12 | 20 | 21 | 3 | 8 | 13 | 8 | 3 | 12 | 16 | 4 | 1 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 27 | 21 | 4 | 10 | 13 | 7 | 1 | 2 | 9 | 4 | 5 | 2 | 1 | 9 | 21 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 12 | 0 | 4 | 7 | 18 | 2 | 1 | 1 | 7 | 0 | 0 | 0 | 1 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 139 | 162 | 200 | 112 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 72 | 179 | 117 | 245 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 42 | 222 | 197 | 152 | ||||||||||||
| ND6 (size: 522 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 3 (1.73%)
Cysteine (Cys, C)
n = 4 (2.31%)
Valine (Val, V)
n = 23 (13.29%)
Leucine (Leu, L)
n = 28 (16.18%)
Isoleucine (Ile, I)
n = 7 (4.05%)
Methionine (Met, M)
n = 8 (4.62%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 12 (6.94%)
Tyrosine (Tyr, Y)
n = 7 (4.05%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.31%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 1 | 4 | 1 | 2 | 4 | 3 | 9 | 0 | 0 | 8 | 1 | 11 | 3 | 10 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 2 | 2 | 6 | 2 | 9 | 2 | 4 | 1 | 10 | 10 | 2 | 1 | 1 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 1 | 3 | 0 | 2 | 3 | 4 | 0 | 4 | 3 | 1 | 9 | 2 | 0 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 2 | 4 | 2 | 0 | 0 | 0 | 1 | 0 | 2 | 1 | 0 | 0 | 0 | 1 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 75 | 20 | 24 | 55 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 42 | 35 | 19 | 78 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 43 | 15 | 58 | 58 | ||||||||||||
| Total protein-coding genes (size: 11437 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 243 (6.38%)
Alanine (Ala, A)
n = 355 (9.32%)
Serine (Ser, S)
n = 231 (6.07%)
Threonine (Thr, T)
n = 298 (7.83%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 228 (5.99%)
Leucine (Leu, L)
n = 654 (17.17%)
Isoleucine (Ile, I)
n = 269 (7.06%)
Methionine (Met, M)
n = 158 (4.15%)
Proline (Pro, P)
n = 223 (5.86%)
Phenylalanine (Phe, F)
n = 238 (6.25%)
Tyrosine (Tyr, Y)
n = 107 (2.81%)
Tryptophan (Trp, W)
n = 119 (3.13%)
Aspartic acid (Asp, D)
n = 76 (2.0%)
Glutamic acid (Glu, E)
n = 104 (2.73%)
Asparagine (Asn, N)
n = 123 (3.23%)
Glutamine (Gln, Q)
n = 92 (2.42%)
Histidine (His, H)
n = 107 (2.81%)
Lysine (Lys, K)
n = 75 (1.97%)
Arginine (Arg, R)
n = 77 (2.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 156 | 113 | 75 | 163 | 146 | 192 | 54 | 82 | 70 | 22 | 75 | 46 | 85 | 22 | 92 | 146 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 83 | 9 | 17 | 79 | 141 | 124 | 11 | 50 | 72 | 90 | 31 | 66 | 81 | 69 | 7 | 53 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 104 | 122 | 19 | 47 | 66 | 63 | 7 | 11 | 37 | 42 | 65 | 15 | 17 | 42 | 81 | 32 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 75 | 87 | 17 | 25 | 51 | 70 | 5 | 15 | 8 | 51 | 3 | 0 | 1 | 3 | 2 | 104 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 1006 | 1054 | 972 | 777 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 514 | 1059 | 689 | 1547 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 316 | 1249 | 1287 | 957 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​o​m​a​t​o​m​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ s​a​l​t​a​t​r​i​x​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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