Viewing data for Nyctereutes procyonoides


Scientific name Nyctereutes procyonoides
Common name Raccoon dog
Maximum lifespan 16.60 years (Nyctereutes procyonoides@AnAge)

Total mtDNA (size: 16713 bases) GC AT G C A T
Base content (bases) 6842 9871 4465 2377 4508 5363
Base content per 1 kb (bases) 409 591 267 142 270 321
Base content (%) 40.9% 59.1%
Total protein-coding genes (size: 11339 bases) GC AT G C A T
Base content (bases) 4669 6670 3187 1482 3164 3506
Base content per 1 kb (bases) 412 588 281 131 279 309
Base content (%) 41.2% 58.8%
D-loop (size: 1246 bases) GC AT G C A T
Base content (bases) 567 679 379 188 300 379
Base content per 1 kb (bases) 455 545 304 151 241 304
Base content (%) 45.5% 54.5%
Total tRNA-coding genes (size: 1511 bases) GC AT G C A T
Base content (bases) 565 946 322 243 429 517
Base content per 1 kb (bases) 374 626 213 161 284 342
Base content (%) 37.4% 62.6%
Total rRNA-coding genes (size: 2532 bases) GC AT G C A T
Base content (bases) 1004 1528 556 448 598 930
Base content per 1 kb (bases) 397 603 220 177 236 367
Base content (%) 39.7% 60.3%
12S rRNA gene (size: 954 bases) GC AT G C A T
Base content (bases) 390 564 221 169 213 351
Base content per 1 kb (bases) 409 591 232 177 223 368
Base content (%) 40.9% 59.1%
16S rRNA gene (size: 1578 bases) GC AT G C A T
Base content (bases) 614 964 335 279 385 579
Base content per 1 kb (bases) 389 611 212 177 244 367
Base content (%) 38.9% 61.1%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 288 393 207 81 200 193
Base content per 1 kb (bases) 423 577 304 119 294 283
Base content (%) 42.3% 57.7%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 68 136 54 14 58 78
Base content per 1 kb (bases) 333 667 265 69 284 382
Base content (%) 33.3% 66.7%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 657 888 381 276 464 424
Base content per 1 kb (bases) 425 575 247 179 300 274
Base content (%) 42.5% 57.5%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 283 401 183 100 180 221
Base content per 1 kb (bases) 414 586 268 146 263 323
Base content (%) 41.4% 58.6%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 344 440 222 122 232 208
Base content per 1 kb (bases) 439 561 283 156 296 265
Base content (%) 43.9% 56.1%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 485 655 328 157 318 337
Base content per 1 kb (bases) 425 575 288 138 279 296
Base content (%) 42.5% 57.5%
ND1 (size: 956 bases) GC AT G C A T
Base content (bases) 414 542 293 121 258 284
Base content per 1 kb (bases) 433 567 306 127 270 297
Base content (%) 43.3% 56.7%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 412 630 303 109 269 361
Base content per 1 kb (bases) 395 605 291 105 258 346
Base content (%) 39.5% 60.5%
ND3 (size: 347 bases) GC AT G C A T
Base content (bases) 148 199 98 50 94 105
Base content per 1 kb (bases) 427 573 282 144 271 303
Base content (%) 42.7% 57.3%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 559 819 394 165 384 435
Base content per 1 kb (bases) 406 594 286 120 279 316
Base content (%) 40.6% 59.4%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 117 180 78 39 90 90
Base content per 1 kb (bases) 394 606 263 131 303 303
Base content (%) 39.4% 60.6%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 713 1108 510 203 524 584
Base content per 1 kb (bases) 392 608 280 111 288 321
Base content (%) 39.2% 60.8%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 205 323 153 52 113 210
Base content per 1 kb (bases) 388 612 290 98 214 398
Base content (%) 38.8% 61.2%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 19 (8.41%)
Serine (Ser, S)
n = 15 (6.64%)
Threonine (Thr, T)
n = 21 (9.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.42%)
Leucine (Leu, L)
n = 41 (18.14%)
Isoleucine (Ile, I)
n = 29 (12.83%)
Methionine (Met, M)
n = 10 (4.42%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 13 (5.75%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 2 (0.88%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 9 (3.98%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 6 (2.65%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 5 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 12 6 5 4 18 6 8 9 0 2 3 5 0 5 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 2 11 6 0 2 3 6 0 3 7 3 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 3 1 2 4 5 1 2 1 1 2 0 0 4 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 1 0 2 4 0 0 3 1 1 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 66 76 40
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 65 37 103
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 76 80 57
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFTMIISMILTLFILFQLKISMHYYPENPGPKPTKMINQHTPWENKWTKIYSPLSLPPQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.49%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 5 (7.46%)
Threonine (Thr, T)
n = 7 (10.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 7 (10.45%)
Isoleucine (Ile, I)
n = 7 (10.45%)
Methionine (Met, M)
n = 5 (7.46%)
Proline (Pro, P)
n = 9 (13.43%)
Phenylalanine (Phe, F)
n = 3 (4.48%)
Tyrosine (Tyr, Y)
n = 3 (4.48%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 2 (2.99%)
Asparagine (Asn, N)
n = 3 (4.48%)
Glutamine (Gln, Q)
n = 4 (5.97%)
Histidine (His, H)
n = 2 (2.99%)
Lysine (Lys, K)
n = 5 (7.46%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 2 3 1 0 3 1 2 4 0 0 0 0 0 2 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 0 0 0 0 0 1 0 4 2 3 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 1 1 0 1 3 1 0 0 2 1 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 1 0 4 1 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
4 20 27 17
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 21 21 22
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 13 30 19
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 41 (7.98%)
Serine (Ser, S)
n = 30 (5.84%)
Threonine (Thr, T)
n = 40 (7.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.2%)
Leucine (Leu, L)
n = 58 (11.28%)
Isoleucine (Ile, I)
n = 38 (7.39%)
Methionine (Met, M)
n = 32 (6.23%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 42 (8.17%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 16 25 9 6 18 5 17 6 1 10 6 15 6 21 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 0 5 16 18 2 4 12 19 12 11 8 8 1 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 18 3 4 12 10 1 0 3 10 9 2 3 8 9 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 5 5 6 9 8 1 1 0 6 1 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
150 99 139 127
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 136 96 207
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
50 146 189 130
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 9 (3.96%)
Serine (Ser, S)
n = 18 (7.93%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 34 (14.98%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 17 (7.49%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 6 (2.64%)
Tyrosine (Tyr, Y)
n = 11 (4.85%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 6 (2.64%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 7 (3.08%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 12 14 6 5 13 1 8 4 3 3 4 5 1 3 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 0 6 2 1 0 3 5 0 3 2 8 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 6 2 7 2 5 0 1 3 3 8 2 1 3 3 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 9 6 3 7 4 0 0 0 6 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 58 67 48
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 54 61 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 71 93 44
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 14 (5.38%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 12 (4.62%)
Proline (Pro, P)
n = 11 (4.23%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 13 (5.0%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 7 (2.69%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 9 10 7 4 13 2 6 7 0 2 7 6 2 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 3 8 3 0 3 4 12 2 2 2 7 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 7 1 5 10 2 1 1 2 5 8 2 0 4 3 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 7 1 0 3 1 1 1 0 2 2 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 65 59 74
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 64 56 98
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 93 93 59
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (7.12%)
Alanine (Ala, A)
n = 22 (5.8%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 26 (6.86%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 16 (4.22%)
Leucine (Leu, L)
n = 53 (13.98%)
Isoleucine (Ile, I)
n = 42 (11.08%)
Methionine (Met, M)
n = 16 (4.22%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 29 (7.65%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 29 12 7 10 22 3 9 5 1 3 4 7 2 7 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 3 2 10 10 0 4 5 18 0 4 7 10 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 11 3 3 6 15 1 1 1 7 7 1 2 5 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 5 1 3 8 8 1 1 1 5 1 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 90 113 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 95 75 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 143 149 67
ND1 (size: 956 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 31 (9.78%)
Serine (Ser, S)
n = 22 (6.94%)
Threonine (Thr, T)
n = 19 (5.99%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 14 (4.42%)
Leucine (Leu, L)
n = 55 (17.35%)
Isoleucine (Ile, I)
n = 30 (9.46%)
Methionine (Met, M)
n = 18 (5.68%)
Proline (Pro, P)
n = 22 (6.94%)
Phenylalanine (Phe, F)
n = 22 (6.94%)
Tyrosine (Tyr, Y)
n = 11 (3.47%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 13 (4.1%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 8 (2.52%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 18 16 6 9 28 4 7 5 1 2 4 7 1 9 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 1 20 10 0 2 3 5 2 2 8 10 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 13 0 2 9 8 1 1 1 4 7 1 1 1 12 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 11 0 0 3 6 1 0 1 5 2 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 87 89 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 92 55 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 114 139 47
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.34%)
Alanine (Ala, A)
n = 20 (5.78%)
Serine (Ser, S)
n = 29 (8.38%)
Threonine (Thr, T)
n = 39 (11.27%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 17 (4.91%)
Leucine (Leu, L)
n = 55 (15.9%)
Isoleucine (Ile, I)
n = 31 (8.96%)
Methionine (Met, M)
n = 36 (10.4%)
Proline (Pro, P)
n = 20 (5.78%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 16 (4.62%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 5 (1.45%)
Lysine (Lys, K)
n = 15 (4.34%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 23 34 4 11 24 3 10 7 1 1 7 6 3 5 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 7 10 0 3 4 6 2 3 6 9 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 19 1 4 13 10 0 0 2 4 6 1 3 1 15 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 0 0 0 12 3 0 0 2 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 78 139 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 106 59 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 119 163 43
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.34%)
Alanine (Ala, A)
n = 20 (5.78%)
Serine (Ser, S)
n = 29 (8.38%)
Threonine (Thr, T)
n = 39 (11.27%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 17 (4.91%)
Leucine (Leu, L)
n = 55 (15.9%)
Isoleucine (Ile, I)
n = 31 (8.96%)
Methionine (Met, M)
n = 36 (10.4%)
Proline (Pro, P)
n = 20 (5.78%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 16 (4.62%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 5 (1.45%)
Lysine (Lys, K)
n = 15 (4.34%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 23 34 4 11 24 3 10 7 1 1 7 6 3 5 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 7 10 0 3 4 6 2 3 6 9 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 19 1 4 13 10 0 0 2 4 6 1 3 1 15 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 0 0 0 12 3 0 0 2 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 78 139 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 106 59 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 119 163 43
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 32 (6.99%)
Serine (Ser, S)
n = 38 (8.3%)
Threonine (Thr, T)
n = 38 (8.3%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 14 (3.06%)
Leucine (Leu, L)
n = 95 (20.74%)
Isoleucine (Ile, I)
n = 38 (8.3%)
Methionine (Met, M)
n = 34 (7.42%)
Proline (Pro, P)
n = 23 (5.02%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 18 (3.93%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 12 (2.62%)
Lysine (Lys, K)
n = 13 (2.84%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 18 27 13 13 40 12 17 10 0 2 4 7 1 9 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 2 4 12 14 2 2 5 8 2 6 6 10 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 15 3 7 9 11 1 1 9 7 11 1 0 6 17 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 5 3 0 3 12 1 2 2 4 3 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 134 156 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 121 87 197
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 139 192 91
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 6 (6.12%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 5 (5.1%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 8 (8.16%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 6 (6.12%)
Methionine (Met, M)
n = 12 (12.24%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 4 8 2 2 8 3 6 2 0 0 1 6 1 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 3 1 2 3 0 0 2 1 1 0 0 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 1 0 2 5 2 0 0 1 0 4 0 0 2 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 21 30 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 21 18 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 36 42 12
ND5 (size: 1821 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.95%)
Alanine (Ala, A)
n = 35 (5.78%)
Serine (Ser, S)
n = 52 (8.58%)
Threonine (Thr, T)
n = 56 (9.24%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 20 (3.3%)
Leucine (Leu, L)
n = 90 (14.85%)
Isoleucine (Ile, I)
n = 58 (9.57%)
Methionine (Met, M)
n = 42 (6.93%)
Proline (Pro, P)
n = 24 (3.96%)
Phenylalanine (Phe, F)
n = 44 (7.26%)
Tyrosine (Tyr, Y)
n = 23 (3.8%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 11 (1.82%)
Glutamic acid (Glu, E)
n = 10 (1.65%)
Asparagine (Asn, N)
n = 28 (4.62%)
Glutamine (Gln, Q)
n = 22 (3.63%)
Histidine (His, H)
n = 12 (1.98%)
Lysine (Lys, K)
n = 23 (3.8%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 29 36 16 20 35 5 13 19 3 5 4 11 0 15 29
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 4 4 16 12 3 4 9 14 3 3 6 14 1 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 18 1 7 17 13 1 7 7 11 12 0 1 11 17 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 2 1 10 22 1 2 2 5 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
106 143 221 137
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
70 153 130 254
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 214 233 133
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (12.57%)
Alanine (Ala, A)
n = 10 (5.71%)
Serine (Ser, S)
n = 11 (6.29%)
Threonine (Thr, T)
n = 12 (6.86%)
Cysteine (Cys, C)
n = 2 (1.14%)
Valine (Val, V)
n = 22 (12.57%)
Leucine (Leu, L)
n = 20 (11.43%)
Isoleucine (Ile, I)
n = 15 (8.57%)
Methionine (Met, M)
n = 9 (5.14%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 13 (7.43%)
Tyrosine (Tyr, Y)
n = 9 (5.14%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 5 (2.86%)
Glutamic acid (Glu, E)
n = 8 (4.57%)
Asparagine (Asn, N)
n = 4 (2.29%)
Glutamine (Gln, Q)
n = 1 (0.57%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (2.29%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 0 1 0 1 0 1 11 0 1 4 3 2 13 12 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 2 0 5 1 1 3 9 2 4 7 0 0 3 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 1 3 2 1 0 5 0 7 2 1 7 4 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 7 4 1 1 3 1 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 7 49 53
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 31 32 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
52 14 32 78
Total protein-coding genes (size: 11407 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 218 (5.74%)
Alanine (Ala, A)
n = 253 (6.66%)
Serine (Ser, S)
n = 285 (7.5%)
Threonine (Thr, T)
n = 310 (8.16%)
Cysteine (Cys, C)
n = 24 (0.63%)
Valine (Val, V)
n = 190 (5.0%)
Leucine (Leu, L)
n = 587 (15.45%)
Isoleucine (Ile, I)
n = 333 (8.77%)
Methionine (Met, M)
n = 250 (6.58%)
Proline (Pro, P)
n = 195 (5.13%)
Phenylalanine (Phe, F)
n = 235 (6.19%)
Tyrosine (Tyr, Y)
n = 141 (3.71%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 68 (1.79%)
Glutamic acid (Glu, E)
n = 94 (2.47%)
Asparagine (Asn, N)
n = 153 (4.03%)
Glutamine (Gln, Q)
n = 91 (2.4%)
Histidine (His, H)
n = 96 (2.53%)
Lysine (Lys, K)
n = 99 (2.61%)
Arginine (Arg, R)
n = 66 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
156 177 198 77 92 231 51 118 80 11 34 48 78 30 101 134
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
52 7 17 34 110 96 13 34 52 100 32 44 55 87 9 76
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
98 119 17 46 93 87 8 19 32 61 80 11 18 52 101 32
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
64 68 26 19 49 85 14 8 10 37 11 1 0 7 0 93
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
823 899 1197 881
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
464 992 749 1595
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
303 1212 1485 800

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​N​y​c​t​e​r​e​u​t​e​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​r​o​c​y​o​n​o​i​d​e​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​



Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.