Viewing data for Trachypithecus johnii


Scientific name Trachypithecus johnii
Common name Hooded leaf monkey
Maximum lifespan 34.00 years (Trachypithecus johnii@AnAge)

Total mtDNA (size: 16544 bases) GC AT G C A T
Base content (bases) 6431 10113 4286 2145 4824 5289
Base content per 1 kb (bases) 389 611 259 130 292 320
Base content (%) 38.9% 61.1%
Total protein-coding genes (size: 11328 bases) GC AT G C A T
Base content (bases) 4345 6983 3041 1304 3469 3514
Base content per 1 kb (bases) 384 616 268 115 306 310
Base content (%) 38.4% 61.6%
D-loop (size: 1087 bases) GC AT G C A T
Base content (bases) 450 637 309 141 313 324
Base content per 1 kb (bases) 414 586 284 130 288 298
Base content (%) 41.4% 58.6%
Total tRNA-coding genes (size: 1502 bases) GC AT G C A T
Base content (bases) 567 935 334 233 412 523
Base content per 1 kb (bases) 377 623 222 155 274 348
Base content (%) 37.7% 62.3%
Total rRNA-coding genes (size: 2489 bases) GC AT G C A T
Base content (bases) 1013 1476 567 446 596 880
Base content per 1 kb (bases) 407 593 228 179 239 354
Base content (%) 40.7% 59.3%
12S rRNA gene (size: 947 bases) GC AT G C A T
Base content (bases) 393 554 220 173 226 328
Base content per 1 kb (bases) 415 585 232 183 239 346
Base content (%) 41.5% 58.5%
16S rRNA gene (size: 1542 bases) GC AT G C A T
Base content (bases) 620 922 347 273 370 552
Base content per 1 kb (bases) 402 598 225 177 240 358
Base content (%) 40.2% 59.8%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 276 405 199 77 197 208
Base content per 1 kb (bases) 405 595 292 113 289 305
Base content (%) 40.5% 59.5%
ATP8 (size: 207 bases) GC AT G C A T
Base content (bases) 63 144 51 12 69 75
Base content per 1 kb (bases) 304 696 246 58 333 362
Base content (%) 30.4% 69.6%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 621 924 377 244 506 418
Base content per 1 kb (bases) 402 598 244 158 328 271
Base content (%) 40.2% 59.8%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 279 405 178 101 196 209
Base content per 1 kb (bases) 408 592 260 148 287 306
Base content (%) 40.8% 59.2%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 315 469 208 107 250 219
Base content per 1 kb (bases) 402 598 265 136 319 279
Base content (%) 40.2% 59.8%
CYTB (size: 1135 bases) GC AT G C A T
Base content (bases) 467 668 327 140 338 330
Base content per 1 kb (bases) 411 589 288 123 298 291
Base content (%) 41.1% 58.9%
ND1 (size: 955 bases) GC AT G C A T
Base content (bases) 371 584 263 108 300 284
Base content per 1 kb (bases) 388 612 275 113 314 297
Base content (%) 38.8% 61.2%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 366 676 284 82 312 364
Base content per 1 kb (bases) 351 649 273 79 299 349
Base content (%) 35.1% 64.9%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 134 212 93 41 106 106
Base content per 1 kb (bases) 387 613 269 118 306 306
Base content (%) 38.7% 61.3%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 520 858 380 140 425 433
Base content per 1 kb (bases) 377 623 276 102 308 314
Base content (%) 37.7% 62.3%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 112 185 77 35 98 87
Base content per 1 kb (bases) 377 623 259 118 330 293
Base content (%) 37.7% 62.3%
ND5 (size: 1806 bases) GC AT G C A T
Base content (bases) 663 1143 478 185 561 582
Base content per 1 kb (bases) 367 633 265 102 311 322
Base content (%) 36.7% 63.3%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 178 344 141 37 127 217
Base content per 1 kb (bases) 341 659 270 71 243 416
Base content (%) 34.1% 65.9%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 23 (10.18%)
Serine (Ser, S)
n = 12 (5.31%)
Threonine (Thr, T)
n = 21 (9.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (4.87%)
Leucine (Leu, L)
n = 46 (20.35%)
Isoleucine (Ile, I)
n = 22 (9.73%)
Methionine (Met, M)
n = 14 (6.19%)
Proline (Pro, P)
n = 15 (6.64%)
Phenylalanine (Phe, F)
n = 11 (4.87%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 2 (0.88%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 12 (5.31%)
Glutamine (Gln, Q)
n = 10 (4.42%)
Histidine (His, H)
n = 5 (2.21%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 3 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 8 12 7 5 24 4 4 8 2 4 1 6 0 7 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 5 10 8 0 3 1 4 0 6 5 4 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 8 2 2 3 3 0 0 4 1 1 1 2 4 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 1 1 0 5 0 0 2 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
46 73 78 30
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
17 67 39 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 59 91 63
ATP8 (size: 207 bases)
Amino acid sequence: MPQLNTSTWFITIITMLPALYLIMQLKLLKTTYYFSPSQKASDMQLFNNPWQLKWTKIYLPPSQLHHS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (2.94%)
Serine (Ser, S)
n = 6 (8.82%)
Threonine (Thr, T)
n = 7 (10.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 11 (16.18%)
Isoleucine (Ile, I)
n = 5 (7.35%)
Methionine (Met, M)
n = 4 (5.88%)
Proline (Pro, P)
n = 6 (8.82%)
Phenylalanine (Phe, F)
n = 3 (4.41%)
Tyrosine (Tyr, Y)
n = 4 (5.88%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 1 (1.47%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 3 (4.41%)
Glutamine (Gln, Q)
n = 6 (8.82%)
Histidine (His, H)
n = 2 (2.94%)
Lysine (Lys, K)
n = 5 (7.35%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 2 1 1 4 0 4 5 1 0 0 0 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 1 1 0 0 0 0 0 3 3 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 3 1 3 1 2 0 0 0 3 1 0 1 1 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 0 1 0 5 0 0 0 0 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 20 24 22
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 21 22 23
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 10 29 24
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 40 (7.78%)
Serine (Ser, S)
n = 32 (6.23%)
Threonine (Thr, T)
n = 33 (6.42%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.81%)
Leucine (Leu, L)
n = 62 (12.06%)
Isoleucine (Ile, I)
n = 41 (7.98%)
Methionine (Met, M)
n = 31 (6.03%)
Proline (Pro, P)
n = 30 (5.84%)
Phenylalanine (Phe, F)
n = 41 (7.98%)
Tyrosine (Tyr, Y)
n = 20 (3.89%)
Tryptophan (Trp, W)
n = 16 (3.11%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 8 (1.56%)
Asparagine (Asn, N)
n = 18 (3.5%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 11 (2.14%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 11 28 12 8 23 4 12 6 1 9 10 15 1 21 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 12 14 14 0 10 13 19 5 13 9 8 0 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 12 2 11 6 12 0 0 3 18 2 2 3 7 11 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 6 2 10 5 10 1 2 3 3 0 0 0 1 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
145 110 137 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
75 132 98 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 135 183 173
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 12 (5.29%)
Serine (Ser, S)
n = 12 (5.29%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 16 (7.05%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 21 (9.25%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 9 (3.96%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 7 9 3 4 13 0 9 6 1 6 5 5 0 7 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 2 5 4 1 0 5 2 4 2 7 5 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 11 0 2 3 5 0 1 1 5 4 1 2 3 6 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 7 4 6 3 4 0 2 1 3 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 55 67 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 59 56 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 64 86 61
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 25 (9.62%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 11 (4.23%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 19 (7.31%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 14 (5.38%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 9 9 5 5 9 4 10 8 0 5 3 3 0 11 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 4 6 3 0 2 9 8 0 3 4 6 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 11 0 4 2 8 0 2 3 10 4 4 1 4 1 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 6 1 1 2 3 0 2 1 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 66 68 74
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 65 57 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 77 94 78
CYTB (size: 1135 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (5.84%)
Alanine (Ala, A)
n = 19 (5.04%)
Serine (Ser, S)
n = 27 (7.16%)
Threonine (Thr, T)
n = 30 (7.96%)
Cysteine (Cys, C)
n = 3 (0.8%)
Valine (Val, V)
n = 16 (4.24%)
Leucine (Leu, L)
n = 64 (16.98%)
Isoleucine (Ile, I)
n = 35 (9.28%)
Methionine (Met, M)
n = 21 (5.57%)
Proline (Pro, P)
n = 25 (6.63%)
Phenylalanine (Phe, F)
n = 23 (6.1%)
Tyrosine (Tyr, Y)
n = 14 (3.71%)
Tryptophan (Trp, W)
n = 11 (2.92%)
Aspartic acid (Asp, D)
n = 9 (2.39%)
Glutamic acid (Glu, E)
n = 4 (1.06%)
Asparagine (Asn, N)
n = 19 (5.04%)
Glutamine (Gln, Q)
n = 9 (2.39%)
Histidine (His, H)
n = 11 (2.92%)
Lysine (Lys, K)
n = 9 (2.39%)
Arginine (Arg, R)
n = 7 (1.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 19 17 16 10 21 5 9 6 3 4 2 8 2 10 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 2 8 8 1 5 7 7 3 1 10 13 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 15 0 5 12 6 0 2 2 7 7 1 3 10 9 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 0 5 4 9 0 1 2 4 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 104 118 86
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
47 97 75 159
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 126 137 92
ND1 (size: 955 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.1%)
Alanine (Ala, A)
n = 29 (9.15%)
Serine (Ser, S)
n = 21 (6.62%)
Threonine (Thr, T)
n = 28 (8.83%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 9 (2.84%)
Leucine (Leu, L)
n = 61 (19.24%)
Isoleucine (Ile, I)
n = 25 (7.89%)
Methionine (Met, M)
n = 16 (5.05%)
Proline (Pro, P)
n = 21 (6.62%)
Phenylalanine (Phe, F)
n = 21 (6.62%)
Tyrosine (Tyr, Y)
n = 14 (4.42%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 14 (4.42%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 7 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 9 15 15 9 25 1 11 4 2 4 1 3 1 14 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 3 14 11 1 2 5 4 2 5 12 4 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 18 0 5 2 12 0 0 2 10 4 0 0 8 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 9 2 2 1 6 1 2 1 4 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 86 92 75
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 97 57 132
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 80 135 92
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 18 (5.2%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 41 (11.85%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (1.16%)
Leucine (Leu, L)
n = 59 (17.05%)
Isoleucine (Ile, I)
n = 34 (9.83%)
Methionine (Met, M)
n = 34 (9.83%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 15 (4.34%)
Tyrosine (Tyr, Y)
n = 12 (3.47%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 22 (6.36%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 3 (0.87%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 9 33 12 9 25 4 9 11 0 2 1 1 0 7 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 7 5 5 1 2 6 5 0 0 13 8 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 20 0 6 7 10 1 0 4 8 4 1 0 15 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 0 0 10 2 1 3 0 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 89 147 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 104 65 146
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 91 152 94
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 18 (5.2%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 41 (11.85%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (1.16%)
Leucine (Leu, L)
n = 59 (17.05%)
Isoleucine (Ile, I)
n = 34 (9.83%)
Methionine (Met, M)
n = 34 (9.83%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 15 (4.34%)
Tyrosine (Tyr, Y)
n = 12 (3.47%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 22 (6.36%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 3 (0.87%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 9 33 12 9 25 4 9 11 0 2 1 1 0 7 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 7 5 5 1 2 6 5 0 0 13 8 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 20 0 6 7 10 1 0 4 8 4 1 0 15 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 0 0 10 2 1 3 0 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 89 147 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 104 65 146
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 91 152 94
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (3.49%)
Alanine (Ala, A)
n = 25 (5.46%)
Serine (Ser, S)
n = 43 (9.39%)
Threonine (Thr, T)
n = 47 (10.26%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 7 (1.53%)
Leucine (Leu, L)
n = 84 (18.34%)
Isoleucine (Ile, I)
n = 44 (9.61%)
Methionine (Met, M)
n = 43 (9.39%)
Proline (Pro, P)
n = 20 (4.37%)
Phenylalanine (Phe, F)
n = 22 (4.8%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 16 36 16 16 26 4 22 10 0 1 0 4 2 7 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 3 4 12 8 1 2 9 4 1 5 12 3 0 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 16 4 10 9 12 0 5 7 11 4 4 0 12 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 7 2 0 2 9 1 0 2 7 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 115 179 106
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 123 82 200
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 142 172 118
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 2 (2.04%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 10 (10.2%)
Methionine (Met, M)
n = 11 (11.22%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 4 10 1 4 10 2 5 1 0 0 1 2 1 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 3 0 2 4 2 0 1 2 0 1 1 1 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 0 2 6 0 1 1 2 1 0 0 2 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 1 1 0 1 0 0 0 1 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 26 30 24
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
10 21 17 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 30 40 23
ND5 (size: 1806 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (4.16%)
Alanine (Ala, A)
n = 37 (6.16%)
Serine (Ser, S)
n = 44 (7.32%)
Threonine (Thr, T)
n = 60 (9.98%)
Cysteine (Cys, C)
n = 6 (1.0%)
Valine (Val, V)
n = 15 (2.5%)
Leucine (Leu, L)
n = 97 (16.14%)
Isoleucine (Ile, I)
n = 60 (9.98%)
Methionine (Met, M)
n = 41 (6.82%)
Proline (Pro, P)
n = 29 (4.83%)
Phenylalanine (Phe, F)
n = 39 (6.49%)
Tyrosine (Tyr, Y)
n = 20 (3.33%)
Tryptophan (Trp, W)
n = 12 (2.0%)
Aspartic acid (Asp, D)
n = 14 (2.33%)
Glutamic acid (Glu, E)
n = 9 (1.5%)
Asparagine (Asn, N)
n = 33 (5.49%)
Glutamine (Gln, Q)
n = 17 (2.83%)
Histidine (His, H)
n = 14 (2.33%)
Lysine (Lys, K)
n = 21 (3.49%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
36 24 34 16 20 38 6 17 17 0 5 2 6 2 23 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 5 12 13 12 0 5 9 8 3 7 7 15 0 15
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 22 1 10 8 15 0 1 10 15 5 1 0 18 15 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 9 0 9 5 19 2 1 3 3 1 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
100 148 226 128
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
62 159 129 252
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 171 227 181
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.03%)
Alanine (Ala, A)
n = 7 (4.05%)
Serine (Ser, S)
n = 11 (6.36%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 19 (10.98%)
Leucine (Leu, L)
n = 24 (13.87%)
Isoleucine (Ile, I)
n = 16 (9.25%)
Methionine (Met, M)
n = 13 (7.51%)
Proline (Pro, P)
n = 3 (1.73%)
Phenylalanine (Phe, F)
n = 8 (4.62%)
Tyrosine (Tyr, Y)
n = 11 (6.36%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 4 (2.31%)
Glutamic acid (Glu, E)
n = 11 (6.36%)
Asparagine (Asn, N)
n = 5 (2.89%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 3 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 1 8 0 0 2 0 15 0 0 10 3 3 3 8 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 2 0 3 2 14 0 4 8 2 1 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 0 4 0 3 0 4 0 11 0 2 7 5 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 6 5 3 1 0 1 1 0 2 0 0 1 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 8 45 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 22 32 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
34 7 50 83
Total protein-coding genes (size: 11382 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 206 (5.43%)
Alanine (Ala, A)
n = 243 (6.41%)
Serine (Ser, S)
n = 271 (7.15%)
Threonine (Thr, T)
n = 330 (8.7%)
Cysteine (Cys, C)
n = 23 (0.61%)
Valine (Val, V)
n = 148 (3.9%)
Leucine (Leu, L)
n = 619 (16.33%)
Isoleucine (Ile, I)
n = 343 (9.05%)
Methionine (Met, M)
n = 255 (6.73%)
Proline (Pro, P)
n = 210 (5.54%)
Phenylalanine (Phe, F)
n = 227 (5.99%)
Tyrosine (Tyr, Y)
n = 141 (3.72%)
Tryptophan (Trp, W)
n = 101 (2.66%)
Aspartic acid (Asp, D)
n = 65 (1.71%)
Glutamic acid (Glu, E)
n = 85 (2.24%)
Asparagine (Asn, N)
n = 173 (4.56%)
Glutamine (Gln, Q)
n = 95 (2.51%)
Histidine (His, H)
n = 95 (2.51%)
Lysine (Lys, K)
n = 92 (2.43%)
Arginine (Arg, R)
n = 63 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
221 122 219 104 94 232 38 131 85 10 50 30 56 12 126 101
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
36 8 15 58 97 81 7 46 66 65 29 53 85 69 3 86
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
93 141 10 63 55 96 2 17 38 103 38 18 20 91 82 34
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
61 67 18 39 26 83 9 13 19 29 2 0 1 4 2 83
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
747 931 1249 865
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
449 999 752 1592
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
217 1022 1441 1112 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​r​a​c​h​y​p​i​t​h​e​c​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ j​o​h​n​i​i​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.