Viewing data for Percopsis transmontana


Scientific name Percopsis transmontana
Common name Sand roller
Maximum lifespan 6.00 years (Percopsis transmontana@AnAge)

Total mtDNA (size: 16079 bases) GC AT G C A T
Base content (bases) 8061 8018 5088 2973 3592 4426
Base content per 1 kb (bases) 501 499 316 185 223 275
Base content (%) 50.1% 49.9%
Total protein-coding genes (size: 11405 bases) GC AT G C A T
Base content (bases) 5769 5636 3813 1956 2646 2990
Base content per 1 kb (bases) 506 494 334 172 232 262
Base content (%) 50.6% 49.4%
D-loop (size: 329 bases) GC AT G C A T
Base content (bases) 141 188 88 53 91 97
Base content per 1 kb (bases) 429 571 267 161 277 295
Base content (%) 42.9% 57.1%
Total tRNA-coding genes (size: 1544 bases) GC AT G C A T
Base content (bases) 740 804 411 329 352 452
Base content per 1 kb (bases) 479 521 266 213 228 293
Base content (%) 47.9% 52.1%
Total rRNA-coding genes (size: 2616 bases) GC AT G C A T
Base content (bases) 1298 1318 714 584 475 843
Base content per 1 kb (bases) 496 504 273 223 182 322
Base content (%) 49.6% 50.4%
12S rRNA gene (size: 946 bases) GC AT G C A T
Base content (bases) 482 464 270 212 172 292
Base content per 1 kb (bases) 510 490 285 224 182 309
Base content (%) 51.0% 49.0%
16S rRNA gene (size: 1670 bases) GC AT G C A T
Base content (bases) 816 854 444 372 303 551
Base content per 1 kb (bases) 489 511 266 223 181 330
Base content (%) 48.9% 51.1%

ATP6 (size: 683 bases) GC AT G C A T
Base content (bases) 324 359 229 95 171 188
Base content per 1 kb (bases) 474 526 335 139 250 275
Base content (%) 47.4% 52.6%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 79 89 54 25 38 51
Base content per 1 kb (bases) 470 530 321 149 226 304
Base content (%) 47.0% 53.0%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 770 781 458 312 413 368
Base content per 1 kb (bases) 496 504 295 201 266 237
Base content (%) 49.6% 50.4%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 330 361 205 125 164 197
Base content per 1 kb (bases) 478 522 297 181 237 285
Base content (%) 47.8% 52.2%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 406 379 262 144 188 191
Base content per 1 kb (bases) 517 483 334 183 239 243
Base content (%) 51.7% 48.3%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 550 591 365 185 295 296
Base content per 1 kb (bases) 482 518 320 162 259 259
Base content (%) 48.2% 51.8%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 518 457 346 172 217 240
Base content per 1 kb (bases) 531 469 355 176 223 246
Base content (%) 53.1% 46.9%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 548 497 374 174 218 279
Base content per 1 kb (bases) 524 476 358 167 209 267
Base content (%) 52.4% 47.6%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 190 159 130 60 92 67
Base content per 1 kb (bases) 544 456 372 172 264 192
Base content (%) 54.4% 45.6%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 721 660 475 246 330 330
Base content per 1 kb (bases) 522 478 344 178 239 239
Base content (%) 52.2% 47.8%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 166 131 110 56 71 60
Base content per 1 kb (bases) 559 441 370 189 239 202
Base content (%) 55.9% 44.1%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 910 929 623 287 406 523
Base content per 1 kb (bases) 495 505 339 156 221 284
Base content (%) 49.5% 50.5%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 263 259 186 77 50 209
Base content per 1 kb (bases) 504 496 356 148 96 400
Base content (%) 50.4% 49.6%

ATP6 (size: 683 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 17 (7.52%)
Serine (Ser, S)
n = 10 (4.42%)
Threonine (Thr, T)
n = 25 (11.06%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (5.31%)
Leucine (Leu, L)
n = 55 (24.34%)
Isoleucine (Ile, I)
n = 21 (9.29%)
Methionine (Met, M)
n = 11 (4.87%)
Proline (Pro, P)
n = 17 (7.52%)
Phenylalanine (Phe, F)
n = 10 (4.42%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 5 (2.21%)
Asparagine (Asn, N)
n = 7 (3.1%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 4 (1.77%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 12 6 8 11 21 9 5 7 2 3 3 6 0 3 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 1 9 7 0 2 1 3 2 1 9 7 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 11 3 1 1 2 0 0 6 0 3 3 1 1 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 0 1 1 0 0 1 3 2 0 0 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
43 85 71 28
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 63 30 109
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 81 86 33
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPSPWFMVLVFSWLVFLTILPPKIVAHTFPNDPAAQSTETTKTEPWSWPWL*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (7.27%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 2 (3.64%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 2 (3.64%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 1 1 2 1 0 1 2 0 0 1 1 2 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 0 2 0 0 0 0 0 0 6 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 4 1 0 0 1 1 0 2 0 0 1 1 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 0 1 2 0 0 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
10 16 16 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 20 11 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 18 24 6
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 49 (9.5%)
Serine (Ser, S)
n = 30 (5.81%)
Threonine (Thr, T)
n = 37 (7.17%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 44 (8.53%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 35 (6.78%)
Methionine (Met, M)
n = 26 (5.04%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 6 (1.16%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 9 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 12 15 10 16 13 13 5 6 0 11 6 14 13 17 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 0 1 5 24 18 2 2 17 14 13 6 16 4 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 16 2 4 10 9 2 1 4 4 14 2 4 5 10 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
18 8 3 2 12 7 1 0 2 5 2 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
164 114 126 113
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 139 92 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
70 205 150 92
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 19 (8.3%)
Leucine (Leu, L)
n = 30 (13.1%)
Isoleucine (Ile, I)
n = 19 (8.3%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 13 (5.68%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 11 (4.8%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 14 10 8 4 11 3 4 7 1 4 4 5 6 2 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 0 8 8 1 2 1 4 2 2 3 5 3 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 2 1 1 6 6 0 0 3 2 6 1 0 3 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 10 5 0 13 1 3 0 2 4 0 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 64 52 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 53 64 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 88 81 34
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 23 (8.85%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 10 4 4 10 14 5 1 9 0 1 2 8 3 5 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 3 12 7 1 0 9 6 6 2 9 2 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 12 0 3 3 6 1 0 3 0 9 4 1 0 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 5 3 1 4 0 3 0 0 5 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 76 52 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 70 51 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 116 87 28
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 38 (10.03%)
Serine (Ser, S)
n = 24 (6.33%)
Threonine (Thr, T)
n = 26 (6.86%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 22 (5.8%)
Leucine (Leu, L)
n = 59 (15.57%)
Isoleucine (Ile, I)
n = 26 (6.86%)
Methionine (Met, M)
n = 11 (2.9%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 29 (7.65%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 18 7 9 10 24 7 6 4 2 5 4 10 3 12 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 3 5 19 11 3 1 9 10 4 4 10 6 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 12 2 4 8 10 0 0 2 1 13 2 3 2 17 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 5 1 3 7 6 3 1 1 5 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
100 98 93 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 107 77 147
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 160 126 58
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.86%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 19 (5.86%)
Threonine (Thr, T)
n = 28 (8.64%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 21 (6.48%)
Leucine (Leu, L)
n = 67 (20.68%)
Isoleucine (Ile, I)
n = 16 (4.94%)
Methionine (Met, M)
n = 9 (2.78%)
Proline (Pro, P)
n = 25 (7.72%)
Phenylalanine (Phe, F)
n = 16 (4.94%)
Tyrosine (Tyr, Y)
n = 10 (3.09%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 9 (2.78%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 6 (1.85%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 11 5 3 24 21 14 4 5 1 1 4 11 5 8 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 2 18 14 0 0 9 4 6 2 16 7 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 14 1 3 6 7 0 0 3 2 8 2 1 3 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 6 5 0 4 6 1 0 1 4 3 0 0 0 1 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
89 107 72 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 103 54 129
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 136 114 31
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.9%)
Alanine (Ala, A)
n = 47 (13.54%)
Serine (Ser, S)
n = 19 (5.48%)
Threonine (Thr, T)
n = 42 (12.1%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 73 (21.04%)
Isoleucine (Ile, I)
n = 18 (5.19%)
Methionine (Met, M)
n = 13 (3.75%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 5 (1.44%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 8 (2.31%)
Asparagine (Asn, N)
n = 11 (3.17%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 10 (2.88%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 15 8 12 13 26 15 5 9 4 2 4 1 2 8 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 2 22 20 3 0 8 6 3 0 12 10 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 17 6 2 7 5 0 0 5 1 4 3 2 3 8 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 7 1 0 1 2 7 0 2 0 2 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 116 98 52
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 126 57 127
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
54 132 124 38
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.9%)
Alanine (Ala, A)
n = 47 (13.54%)
Serine (Ser, S)
n = 19 (5.48%)
Threonine (Thr, T)
n = 42 (12.1%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 73 (21.04%)
Isoleucine (Ile, I)
n = 18 (5.19%)
Methionine (Met, M)
n = 13 (3.75%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 5 (1.44%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 8 (2.31%)
Asparagine (Asn, N)
n = 11 (3.17%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 10 (2.88%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 15 8 12 13 26 15 5 9 4 2 4 1 2 8 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 2 22 20 3 0 8 6 3 0 12 10 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 17 6 2 7 5 0 0 5 1 4 3 2 3 8 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 7 1 0 1 2 7 0 2 0 2 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 116 98 52
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 126 57 127
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
54 132 124 38
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 31 (6.75%)
Alanine (Ala, A)
n = 41 (8.93%)
Serine (Ser, S)
n = 30 (6.54%)
Threonine (Thr, T)
n = 42 (9.15%)
Cysteine (Cys, C)
n = 6 (1.31%)
Valine (Val, V)
n = 21 (4.58%)
Leucine (Leu, L)
n = 103 (22.44%)
Isoleucine (Ile, I)
n = 26 (5.66%)
Methionine (Met, M)
n = 22 (4.79%)
Proline (Pro, P)
n = 28 (6.1%)
Phenylalanine (Phe, F)
n = 15 (3.27%)
Tyrosine (Tyr, Y)
n = 12 (2.61%)
Tryptophan (Trp, W)
n = 16 (3.49%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 7 (1.53%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 20 10 23 25 30 13 10 6 4 4 5 8 4 8 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
12 1 5 0 27 14 0 2 12 9 8 5 14 6 3 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 18 1 2 12 8 1 1 6 3 9 7 2 1 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 5 7 0 4 7 4 1 3 7 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
109 152 115 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 134 68 187
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
66 189 147 58
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (7.14%)
Alanine (Ala, A)
n = 15 (15.31%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 26 (26.53%)
Isoleucine (Ile, I)
n = 0 (0%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 0 2 3 7 9 5 1 3 0 0 0 0 1 5 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 1 1 9 5 0 1 3 3 0 0 2 0 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 4 1 1 4 1 0 0 2 0 0 1 1 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 0 2 0 1 0 0 0 1 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
26 37 17 19
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
15 33 13 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 40 30 14
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.39%)
Alanine (Ala, A)
n = 63 (10.29%)
Serine (Ser, S)
n = 41 (6.7%)
Threonine (Thr, T)
n = 60 (9.8%)
Cysteine (Cys, C)
n = 9 (1.47%)
Valine (Val, V)
n = 24 (3.92%)
Leucine (Leu, L)
n = 96 (15.69%)
Isoleucine (Ile, I)
n = 43 (7.03%)
Methionine (Met, M)
n = 33 (5.39%)
Proline (Pro, P)
n = 33 (5.39%)
Phenylalanine (Phe, F)
n = 38 (6.21%)
Tyrosine (Tyr, Y)
n = 8 (1.31%)
Tryptophan (Trp, W)
n = 13 (2.12%)
Aspartic acid (Asp, D)
n = 13 (2.12%)
Glutamic acid (Glu, E)
n = 11 (1.8%)
Asparagine (Asn, N)
n = 27 (4.41%)
Glutamine (Gln, Q)
n = 19 (3.1%)
Histidine (His, H)
n = 17 (2.78%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 11 (1.8%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 29 17 10 17 50 16 3 16 3 0 9 10 5 15 23
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
16 1 8 7 31 25 0 4 14 11 4 3 20 10 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
29 26 3 7 12 8 1 1 12 3 5 3 0 2 25 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 7 4 2 11 12 8 1 4 5 1 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
144 173 196 100
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
79 184 116 234
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
64 266 211 72
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.03%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 15 (8.67%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 26 (15.03%)
Leucine (Leu, L)
n = 30 (17.34%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 6 (3.47%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 14 (8.09%)
Tyrosine (Tyr, Y)
n = 9 (5.2%)
Tryptophan (Trp, W)
n = 4 (2.31%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 5 (2.89%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 3 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 2 8 1 0 5 2 0 0 13 1 3 9 12 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 9 2 5 3 3 2 4 17 0 3 0 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 11 1 0 2 0 1 8 1 4 14 1 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 5 2 0 0 1 0 0 0 3 0 1 0 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 22 15 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 40 19 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
71 15 16 72
Total protein-coding genes (size: 11427 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 246 (6.47%)
Alanine (Ala, A)
n = 377 (9.91%)
Serine (Ser, S)
n = 238 (6.25%)
Threonine (Thr, T)
n = 318 (8.36%)
Cysteine (Cys, C)
n = 31 (0.81%)
Valine (Val, V)
n = 222 (5.83%)
Leucine (Leu, L)
n = 671 (17.63%)
Isoleucine (Ile, I)
n = 230 (6.04%)
Methionine (Met, M)
n = 158 (4.15%)
Proline (Pro, P)
n = 226 (5.94%)
Phenylalanine (Phe, F)
n = 228 (5.99%)
Tyrosine (Tyr, Y)
n = 99 (2.6%)
Tryptophan (Trp, W)
n = 114 (3.0%)
Aspartic acid (Asp, D)
n = 73 (1.92%)
Glutamic acid (Glu, E)
n = 102 (2.68%)
Asparagine (Asn, N)
n = 109 (2.86%)
Glutamine (Gln, Q)
n = 93 (2.44%)
Histidine (His, H)
n = 114 (3.0%)
Lysine (Lys, K)
n = 76 (2.0%)
Arginine (Arg, R)
n = 75 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
85 145 88 105 150 226 110 49 74 19 44 46 77 55 101 127
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
70 6 25 36 189 139 13 17 87 77 65 27 126 60 13 20
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
138 138 22 39 74 65 8 3 49 25 74 35 31 21 88 11
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
103 63 39 10 63 45 31 3 18 39 15 0 1 4 1 79
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1020 1099 944 743
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
519 1107 671 1509
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
528 1502 1223 553

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​e​r​c​o​p​s​i​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ t​r​a​n​s​m​o​n​t​a​n​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​



Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.