Viewing data for Nycticebus coucang
| Scientific name | Nycticebus coucang |
| Common name | Slow loris |
| Maximum lifespan | 25.80 years (Nycticebus coucang@AnAge) |
| Total mtDNA (size: 16764 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6831 | 9933 | 4521 | 2310 | 4539 | 5394 |
| Base content per 1 kb (bases) | 407 | 593 | 270 | 138 | 271 | 322 |
| Base content (%) | 40.7% | 59.3% | ||||
| Total protein-coding genes (size: 11349 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4677 | 6672 | 3230 | 1447 | 3164 | 3508 |
| Base content per 1 kb (bases) | 412 | 588 | 285 | 128 | 279 | 309 |
| Base content (%) | 41.2% | 58.8% | ||||
| D-loop (size: 1280 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 506 | 774 | 339 | 167 | 355 | 419 |
| Base content per 1 kb (bases) | 395 | 605 | 265 | 130 | 277 | 327 |
| Base content (%) | 39.5% | 60.5% | ||||
| Total tRNA-coding genes (size: 1507 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 571 | 936 | 329 | 242 | 408 | 528 |
| Base content per 1 kb (bases) | 379 | 621 | 218 | 161 | 271 | 350 |
| Base content (%) | 37.9% | 62.1% | ||||
| Total rRNA-coding genes (size: 2559 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1046 | 1513 | 598 | 448 | 597 | 916 |
| Base content per 1 kb (bases) | 409 | 591 | 234 | 175 | 233 | 358 |
| Base content (%) | 40.9% | 59.1% | ||||
| 12S rRNA gene (size: 971 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 419 | 552 | 242 | 177 | 212 | 340 |
| Base content per 1 kb (bases) | 432 | 568 | 249 | 182 | 218 | 350 |
| Base content (%) | 43.2% | 56.8% | ||||
| 16S rRNA gene (size: 1588 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 627 | 961 | 356 | 271 | 385 | 576 |
| Base content per 1 kb (bases) | 395 | 605 | 224 | 171 | 242 | 363 |
| Base content (%) | 39.5% | 60.5% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 279 | 402 | 200 | 79 | 193 | 209 |
| Base content per 1 kb (bases) | 410 | 590 | 294 | 116 | 283 | 307 |
| Base content (%) | 41.0% | 59.0% | ||||
| ATP8 (size: 204 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 69 | 135 | 52 | 17 | 54 | 81 |
| Base content per 1 kb (bases) | 338 | 662 | 255 | 83 | 265 | 397 |
| Base content (%) | 33.8% | 66.2% | ||||
| COX1 (size: 1542 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 662 | 880 | 380 | 282 | 477 | 403 |
| Base content per 1 kb (bases) | 429 | 571 | 246 | 183 | 309 | 261 |
| Base content (%) | 42.9% | 57.1% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 277 | 407 | 177 | 100 | 195 | 212 |
| Base content per 1 kb (bases) | 405 | 595 | 259 | 146 | 285 | 310 |
| Base content (%) | 40.5% | 59.5% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 332 | 452 | 213 | 119 | 226 | 226 |
| Base content per 1 kb (bases) | 423 | 577 | 272 | 152 | 288 | 288 |
| Base content (%) | 42.3% | 57.7% | ||||
| CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 491 | 649 | 337 | 154 | 317 | 332 |
| Base content per 1 kb (bases) | 431 | 569 | 296 | 135 | 278 | 291 |
| Base content (%) | 43.1% | 56.9% | ||||
| ND1 (size: 957 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 385 | 572 | 269 | 116 | 263 | 309 |
| Base content per 1 kb (bases) | 402 | 598 | 281 | 121 | 275 | 323 |
| Base content (%) | 40.2% | 59.8% | ||||
| ND2 (size: 1044 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 402 | 642 | 309 | 93 | 287 | 355 |
| Base content per 1 kb (bases) | 385 | 615 | 296 | 89 | 275 | 340 |
| Base content (%) | 38.5% | 61.5% | ||||
| ND3 (size: 347 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 133 | 214 | 92 | 41 | 103 | 111 |
| Base content per 1 kb (bases) | 383 | 617 | 265 | 118 | 297 | 320 |
| Base content (%) | 38.3% | 61.7% | ||||
| ND4 (size: 1384 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 571 | 813 | 414 | 157 | 381 | 432 |
| Base content per 1 kb (bases) | 413 | 587 | 299 | 113 | 275 | 312 |
| Base content (%) | 41.3% | 58.7% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 129 | 168 | 86 | 43 | 89 | 79 |
| Base content per 1 kb (bases) | 434 | 566 | 290 | 145 | 300 | 266 |
| Base content (%) | 43.4% | 56.6% | ||||
| ND5 (size: 1812 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 740 | 1072 | 534 | 206 | 506 | 566 |
| Base content per 1 kb (bases) | 408 | 592 | 295 | 114 | 279 | 312 |
| Base content (%) | 40.8% | 59.2% | ||||
| ND6 (size: 528 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 225 | 303 | 180 | 45 | 90 | 213 |
| Base content per 1 kb (bases) | 426 | 574 | 341 | 85 | 170 | 403 |
| Base content (%) | 42.6% | 57.4% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.98%) 
Alanine (Ala, A)
n = 20 (8.85%) 
Serine (Ser, S)
n = 17 (7.52%) 
Threonine (Thr, T)
n = 23 (10.18%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 10 (4.42%) 
Leucine (Leu, L)
n = 40 (17.7%) 
Isoleucine (Ile, I)
n = 29 (12.83%) 
Methionine (Met, M)
n = 13 (5.75%) 
Proline (Pro, P)
n = 12 (5.31%) 
Phenylalanine (Phe, F)
n = 11 (4.87%) 
Tyrosine (Tyr, Y)
n = 3 (1.33%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 2 (0.88%) 
Glutamic acid (Glu, E)
n = 2 (0.88%) 
Asparagine (Asn, N)
n = 7 (3.1%) 
Glutamine (Gln, Q)
n = 9 (3.98%) 
Histidine (His, H)
n = 7 (3.1%) 
Lysine (Lys, K)
n = 4 (1.77%) 
Arginine (Arg, R)
n = 5 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 16 | 10 | 9 | 4 | 18 | 3 | 5 | 6 | 3 | 0 | 3 | 5 | 2 | 6 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 7 | 5 | 6 | 2 | 3 | 2 | 4 | 0 | 4 | 5 | 3 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 12 | 0 | 1 | 1 | 11 | 0 | 0 | 4 | 0 | 3 | 0 | 1 | 4 | 3 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 1 | 1 | 0 | 2 | 4 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 43 | 67 | 80 | 37 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 21 | 68 | 35 | 103 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 15 | 65 | 94 | 53 | ||||||||||||
| ATP8 (size: 204 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLDTSTWTITIMSMILTLFILFQLKLSKFMYPTNPTKKLTKPHKLESPWEMKWTKTYLPHSLPLQ* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 5 (7.46%)
Threonine (Thr, T)
n = 10 (14.93%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 11 (16.42%)
Isoleucine (Ile, I)
n = 4 (5.97%)
Methionine (Met, M)
n = 5 (7.46%)
Proline (Pro, P)
n = 7 (10.45%)
Phenylalanine (Phe, F)
n = 3 (4.48%)
Tyrosine (Tyr, Y)
n = 2 (2.99%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 2 (2.99%)
Asparagine (Asn, N)
n = 1 (1.49%)
Glutamine (Gln, Q)
n = 3 (4.48%)
Histidine (His, H)
n = 2 (2.99%)
Lysine (Lys, K)
n = 8 (11.94%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 2 | 3 | 1 | 1 | 5 | 1 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 2 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 3 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 4 | 1 | 1 | 0 | 3 | 0 | 0 | 1 | 1 | 1 | 2 | 1 | 0 | 1 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 1 | 1 | 1 | 0 | 7 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 3 | 20 | 29 | 16 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 4 | 21 | 20 | 23 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 11 | 32 | 15 | ||||||||||||
| COX1 (size: 1542 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.16%)
Alanine (Ala, A)
n = 40 (7.8%)
Serine (Ser, S)
n = 32 (6.24%)
Threonine (Thr, T)
n = 35 (6.82%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.6%)
Leucine (Leu, L)
n = 59 (11.5%)
Isoleucine (Ile, I)
n = 37 (7.21%)
Methionine (Met, M)
n = 33 (6.43%)
Proline (Pro, P)
n = 28 (5.46%)
Phenylalanine (Phe, F)
n = 42 (8.19%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 16 (3.12%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.7%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 18 | 19 | 24 | 9 | 4 | 20 | 7 | 15 | 6 | 1 | 12 | 4 | 15 | 8 | 19 | 23 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 9 | 0 | 1 | 11 | 16 | 12 | 1 | 10 | 11 | 18 | 8 | 5 | 7 | 13 | 3 | 10 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 9 | 4 | 10 | 9 | 9 | 1 | 2 | 1 | 6 | 13 | 3 | 4 | 8 | 8 | 9 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 6 | 4 | 9 | 6 | 8 | 1 | 1 | 2 | 5 | 0 | 0 | 0 | 0 | 1 | 14 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 151 | 102 | 133 | 128 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 76 | 132 | 96 | 210 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 55 | 146 | 174 | 139 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 9 (3.96%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 12 (5.29%)
Leucine (Leu, L)
n = 33 (14.54%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 16 (7.05%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 6 (2.64%)
Tyrosine (Tyr, Y)
n = 11 (4.85%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 12 (5.29%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 7 (3.08%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 11 | 14 | 10 | 6 | 8 | 0 | 5 | 6 | 0 | 2 | 1 | 9 | 0 | 4 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 3 | 2 | 5 | 2 | 0 | 0 | 0 | 4 | 4 | 6 | 2 | 5 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 6 | 1 | 5 | 6 | 4 | 0 | 1 | 3 | 6 | 5 | 1 | 4 | 2 | 3 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 12 | 3 | 4 | 8 | 3 | 1 | 0 | 2 | 3 | 1 | 0 | 0 | 0 | 1 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 56 | 56 | 66 | 50 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 55 | 61 | 86 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 66 | 85 | 59 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 14 (5.38%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 25 (9.62%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 9 (3.46%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 9 | 7 | 7 | 2 | 11 | 4 | 9 | 7 | 0 | 3 | 2 | 8 | 1 | 8 | 15 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 2 | 2 | 5 | 7 | 0 | 4 | 7 | 8 | 2 | 2 | 2 | 8 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 12 | 0 | 3 | 4 | 8 | 0 | 1 | 3 | 4 | 6 | 3 | 0 | 5 | 4 | 7 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 6 | 1 | 2 | 2 | 2 | 0 | 2 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 60 | 64 | 66 | 71 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 66 | 55 | 96 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 15 | 83 | 105 | 58 | ||||||||||||
| CYTB (size: 1140 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 25 (6.6%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 25 (6.6%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 20 (5.28%)
Leucine (Leu, L)
n = 57 (15.04%)
Isoleucine (Ile, I)
n = 39 (10.29%)
Methionine (Met, M)
n = 12 (3.17%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 28 (7.39%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 25 | 11 | 6 | 9 | 32 | 4 | 4 | 6 | 0 | 6 | 5 | 6 | 3 | 7 | 21 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 1 | 3 | 4 | 11 | 9 | 1 | 2 | 6 | 15 | 1 | 4 | 9 | 8 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 12 | 0 | 5 | 3 | 15 | 1 | 1 | 2 | 7 | 6 | 1 | 2 | 4 | 14 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 5 | 0 | 4 | 7 | 9 | 1 | 1 | 2 | 4 | 1 | 1 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 85 | 100 | 108 | 87 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 52 | 96 | 76 | 156 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 17 | 141 | 148 | 74 | ||||||||||||
| ND1 (size: 957 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.46%)
Alanine (Ala, A)
n = 29 (9.12%)
Serine (Ser, S)
n = 22 (6.92%)
Threonine (Thr, T)
n = 26 (8.18%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 13 (4.09%)
Leucine (Leu, L)
n = 55 (17.3%)
Isoleucine (Ile, I)
n = 25 (7.86%)
Methionine (Met, M)
n = 19 (5.97%)
Proline (Pro, P)
n = 21 (6.6%)
Phenylalanine (Phe, F)
n = 22 (6.92%)
Tyrosine (Tyr, Y)
n = 11 (3.46%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 13 (4.09%)
Glutamine (Gln, Q)
n = 7 (2.2%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 7 (2.2%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 16 | 14 | 7 | 5 | 31 | 3 | 9 | 5 | 2 | 0 | 3 | 10 | 0 | 9 | 13 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 2 | 0 | 3 | 11 | 14 | 1 | 1 | 2 | 6 | 2 | 2 | 6 | 12 | 1 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 11 | 0 | 1 | 5 | 12 | 0 | 4 | 0 | 5 | 6 | 0 | 0 | 7 | 6 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 11 | 0 | 1 | 2 | 7 | 1 | 1 | 1 | 5 | 0 | 0 | 0 | 0 | 1 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 67 | 85 | 95 | 72 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 94 | 58 | 134 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 90 | 156 | 57 | ||||||||||||
| ND2 (size: 1044 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.03%)
Alanine (Ala, A)
n = 16 (4.61%)
Serine (Ser, S)
n = 37 (10.66%)
Threonine (Thr, T)
n = 37 (10.66%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 62 (17.87%)
Isoleucine (Ile, I)
n = 40 (11.53%)
Methionine (Met, M)
n = 30 (8.65%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 5 (1.44%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 18 (5.19%)
Glutamine (Gln, Q)
n = 9 (2.59%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 3 (0.86%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 25 | 27 | 9 | 10 | 29 | 3 | 8 | 7 | 2 | 1 | 3 | 4 | 1 | 2 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 0 | 4 | 5 | 6 | 1 | 2 | 1 | 9 | 2 | 3 | 7 | 12 | 1 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 14 | 0 | 9 | 7 | 17 | 0 | 1 | 3 | 1 | 4 | 0 | 3 | 4 | 14 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 0 | 0 | 0 | 11 | 1 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 1 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 43 | 91 | 141 | 73 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 32 | 109 | 54 | 153 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 109 | 160 | 61 | ||||||||||||
| ND3 (size: 1044 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.03%)
Alanine (Ala, A)
n = 16 (4.61%)
Serine (Ser, S)
n = 37 (10.66%)
Threonine (Thr, T)
n = 37 (10.66%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 62 (17.87%)
Isoleucine (Ile, I)
n = 40 (11.53%)
Methionine (Met, M)
n = 30 (8.65%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 5 (1.44%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 18 (5.19%)
Glutamine (Gln, Q)
n = 9 (2.59%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 3 (0.86%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 25 | 27 | 9 | 10 | 29 | 3 | 8 | 7 | 2 | 1 | 3 | 4 | 1 | 2 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 0 | 4 | 5 | 6 | 1 | 2 | 1 | 9 | 2 | 3 | 7 | 12 | 1 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 14 | 0 | 9 | 7 | 17 | 0 | 1 | 3 | 1 | 4 | 0 | 3 | 4 | 14 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 0 | 0 | 0 | 11 | 1 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 1 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 43 | 91 | 141 | 73 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 32 | 109 | 54 | 153 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 109 | 160 | 61 | ||||||||||||
| ND4 (size: 1384 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.7%)
Alanine (Ala, A)
n = 27 (5.87%)
Serine (Ser, S)
n = 37 (8.04%)
Threonine (Thr, T)
n = 48 (10.43%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 17 (3.7%)
Leucine (Leu, L)
n = 97 (21.09%)
Isoleucine (Ile, I)
n = 42 (9.13%)
Methionine (Met, M)
n = 29 (6.3%)
Proline (Pro, P)
n = 22 (4.78%)
Phenylalanine (Phe, F)
n = 15 (3.26%)
Tyrosine (Tyr, Y)
n = 14 (3.04%)
Tryptophan (Trp, W)
n = 12 (2.61%)
Aspartic acid (Asp, D)
n = 3 (0.65%)
Glutamic acid (Glu, E)
n = 8 (1.74%)
Asparagine (Asn, N)
n = 18 (3.91%)
Glutamine (Gln, Q)
n = 10 (2.17%)
Histidine (His, H)
n = 17 (3.7%)
Lysine (Lys, K)
n = 13 (2.83%)
Arginine (Arg, R)
n = 11 (2.39%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 17 | 25 | 20 | 12 | 19 | 36 | 6 | 21 | 8 | 2 | 7 | 2 | 6 | 2 | 3 | 12 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 9 | 1 | 3 | 7 | 9 | 11 | 0 | 1 | 7 | 7 | 2 | 5 | 6 | 9 | 2 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 19 | 23 | 1 | 7 | 9 | 11 | 0 | 3 | 7 | 5 | 9 | 3 | 3 | 7 | 11 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 8 | 0 | 0 | 3 | 12 | 1 | 0 | 3 | 8 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 72 | 133 | 160 | 96 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 54 | 124 | 83 | 200 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 31 | 157 | 189 | 84 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 6 (6.12%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 8 (8.16%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 4 | 4 | 3 | 4 | 4 | 11 | 3 | 2 | 1 | 1 | 1 | 0 | 5 | 0 | 3 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 2 | 3 | 5 | 1 | 0 | 0 | 2 | 1 | 1 | 0 | 1 | 1 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 2 | 1 | 0 | 3 | 2 | 1 | 0 | 1 | 1 | 2 | 0 | 0 | 1 | 5 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 22 | 29 | 29 | 19 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 9 | 23 | 17 | 50 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 12 | 34 | 33 | 20 | ||||||||||||
| ND5 (size: 1812 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.64%)
Alanine (Ala, A)
n = 39 (6.47%)
Serine (Ser, S)
n = 54 (8.96%)
Threonine (Thr, T)
n = 61 (10.12%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 18 (2.99%)
Leucine (Leu, L)
n = 94 (15.59%)
Isoleucine (Ile, I)
n = 56 (9.29%)
Methionine (Met, M)
n = 33 (5.47%)
Proline (Pro, P)
n = 30 (4.98%)
Phenylalanine (Phe, F)
n = 41 (6.8%)
Tyrosine (Tyr, Y)
n = 13 (2.16%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 12 (1.99%)
Glutamic acid (Glu, E)
n = 9 (1.49%)
Asparagine (Asn, N)
n = 34 (5.64%)
Glutamine (Gln, Q)
n = 19 (3.15%)
Histidine (His, H)
n = 14 (2.32%)
Lysine (Lys, K)
n = 23 (3.81%)
Arginine (Arg, R)
n = 9 (1.49%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 27 | 29 | 26 | 13 | 9 | 46 | 6 | 15 | 17 | 2 | 3 | 6 | 6 | 3 | 16 | 25 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 2 | 2 | 9 | 16 | 14 | 0 | 2 | 15 | 9 | 2 | 12 | 7 | 11 | 0 | 12 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 19 | 28 | 2 | 15 | 15 | 13 | 1 | 1 | 9 | 4 | 9 | 3 | 5 | 8 | 26 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 9 | 0 | 4 | 8 | 17 | 6 | 0 | 6 | 3 | 0 | 0 | 0 | 1 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 106 | 146 | 217 | 135 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 63 | 174 | 125 | 242 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 37 | 214 | 224 | 129 | ||||||||||||
| ND6 (size: 528 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 31 (17.71%)
Alanine (Ala, A)
n = 9 (5.14%)
Serine (Ser, S)
n = 15 (8.57%)
Threonine (Thr, T)
n = 5 (2.86%)
Cysteine (Cys, C)
n = 2 (1.14%)
Valine (Val, V)
n = 22 (12.57%)
Leucine (Leu, L)
n = 19 (10.86%)
Isoleucine (Ile, I)
n = 12 (6.86%)
Methionine (Met, M)
n = 12 (6.86%)
Proline (Pro, P)
n = 4 (2.29%)
Phenylalanine (Phe, F)
n = 13 (7.43%)
Tyrosine (Tyr, Y)
n = 9 (5.14%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 4 (2.29%)
Glutamic acid (Glu, E)
n = 7 (4.0%)
Asparagine (Asn, N)
n = 3 (1.71%)
Glutamine (Gln, Q)
n = 1 (0.57%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 2 (1.14%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 1 | 1 | 0 | 0 | 1 | 1 | 10 | 0 | 1 | 9 | 0 | 2 | 11 | 12 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 11 | 2 | 0 | 3 | 3 | 2 | 1 | 11 | 0 | 3 | 17 | 4 | 0 | 0 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 2 | 0 | 5 | 1 | 1 | 2 | 6 | 0 | 6 | 3 | 3 | 7 | 3 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 1 | 6 | 4 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 73 | 9 | 39 | 55 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 45 | 27 | 26 | 78 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 62 | 9 | 25 | 80 | ||||||||||||
| Total protein-coding genes (size: 11403 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 218 (5.74%)
Alanine (Ala, A)
n = 245 (6.45%)
Serine (Ser, S)
n = 296 (7.79%)
Threonine (Thr, T)
n = 328 (8.63%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 183 (4.82%)
Leucine (Leu, L)
n = 610 (16.06%)
Isoleucine (Ile, I)
n = 336 (8.84%)
Methionine (Met, M)
n = 227 (5.98%)
Proline (Pro, P)
n = 202 (5.32%)
Phenylalanine (Phe, F)
n = 228 (6.0%)
Tyrosine (Tyr, Y)
n = 117 (3.08%)
Tryptophan (Trp, W)
n = 103 (2.71%)
Aspartic acid (Asp, D)
n = 70 (1.84%)
Glutamic acid (Glu, E)
n = 88 (2.32%)
Asparagine (Asn, N)
n = 152 (4.0%)
Glutamine (Gln, Q)
n = 90 (2.37%)
Histidine (His, H)
n = 107 (2.82%)
Lysine (Lys, K)
n = 97 (2.55%)
Arginine (Arg, R)
n = 66 (1.74%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 148 | 188 | 165 | 91 | 75 | 262 | 41 | 109 | 76 | 14 | 44 | 29 | 78 | 32 | 94 | 134 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 62 | 11 | 16 | 56 | 97 | 85 | 7 | 36 | 54 | 86 | 42 | 51 | 55 | 88 | 8 | 64 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 113 | 140 | 11 | 64 | 64 | 107 | 6 | 20 | 35 | 48 | 69 | 19 | 32 | 55 | 97 | 34 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 73 | 71 | 17 | 29 | 41 | 83 | 14 | 6 | 18 | 39 | 3 | 1 | 0 | 4 | 5 | 84 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 804 | 934 | 1196 | 866 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 470 | 1016 | 730 | 1584 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 313 | 1158 | 1478 | 851 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​N​y​c​t​i​c​e​b​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ c​o​u​c​a​n​g​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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