Viewing data for Poecile palustris


Scientific name Poecile palustris
Common name Marsh tit
Maximum lifespan 11.90 years (Poecile palustris@AnAge)

Total mtDNA (size: 16824 bases) GC AT G C A T
Base content (bases) 8132 8691 5654 2478 3786 4905
Base content per 1 kb (bases) 483 517 336 147 225 292
Base content (%) 48.3% 51.7%
Total protein-coding genes (size: 11375 bases) GC AT G C A T
Base content (bases) 5670 5705 4160 1510 2518 3187
Base content per 1 kb (bases) 498 502 366 133 221 280
Base content (%) 49.8% 50.2%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1547 bases) GC AT G C A T
Base content (bases) 664 883 399 265 374 509
Base content per 1 kb (bases) 429 571 258 171 242 329
Base content (%) 42.9% 57.1%
Total rRNA-coding genes (size: 2588 bases) GC AT G C A T
Base content (bases) 1215 1373 689 526 529 844
Base content per 1 kb (bases) 469 531 266 203 204 326
Base content (%) 46.9% 53.1%
12S rRNA gene (size: 987 bases) GC AT G C A T
Base content (bases) 493 494 282 211 200 294
Base content per 1 kb (bases) 499 501 286 214 203 298
Base content (%) 49.9% 50.1%
16S rRNA gene (size: 1601 bases) GC AT G C A T
Base content (bases) 722 879 407 315 329 550
Base content per 1 kb (bases) 451 549 254 197 205 344
Base content (%) 45.1% 54.9%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 329 355 259 70 161 194
Base content per 1 kb (bases) 481 519 379 102 235 284
Base content (%) 48.1% 51.9%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 74 94 63 11 46 48
Base content per 1 kb (bases) 440 560 375 65 274 286
Base content (%) 44.0% 56.0%
COX1 (size: 1560 bases) GC AT G C A T
Base content (bases) 788 772 517 271 365 407
Base content per 1 kb (bases) 505 495 331 174 234 261
Base content (%) 50.5% 49.5%
COX2 (size: 681 bases) GC AT G C A T
Base content (bases) 340 341 236 104 143 198
Base content per 1 kb (bases) 499 501 347 153 210 291
Base content (%) 49.9% 50.1%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 397 387 274 123 184 203
Base content per 1 kb (bases) 506 494 349 157 235 259
Base content (%) 50.6% 49.4%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 570 573 428 142 264 309
Base content per 1 kb (bases) 499 501 374 124 231 270
Base content (%) 49.9% 50.1%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 486 492 345 141 235 257
Base content per 1 kb (bases) 497 503 353 144 240 263
Base content (%) 49.7% 50.3%
ND2 (size: 1040 bases) GC AT G C A T
Base content (bases) 529 511 410 119 209 302
Base content per 1 kb (bases) 509 491 394 114 201 290
Base content (%) 50.9% 49.1%
ND3 (size: 345 bases) GC AT G C A T
Base content (bases) 175 170 127 48 81 89
Base content per 1 kb (bases) 507 493 368 139 235 258
Base content (%) 50.7% 49.3%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 691 687 534 157 309 378
Base content per 1 kb (bases) 501 499 388 114 224 274
Base content (%) 50.1% 49.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 150 147 106 44 72 75
Base content per 1 kb (bases) 505 495 357 148 242 253
Base content (%) 50.5% 49.5%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 895 923 668 227 394 529
Base content per 1 kb (bases) 492 508 367 125 217 291
Base content (%) 49.2% 50.8%
ND6 (size: 516 bases) GC AT G C A T
Base content (bases) 250 266 195 55 60 206
Base content per 1 kb (bases) 484 516 378 107 116 399
Base content (%) 48.4% 51.6%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 17 (7.49%)
Threonine (Thr, T)
n = 23 (10.13%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (3.08%)
Leucine (Leu, L)
n = 60 (26.43%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 8 (3.52%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 2 (0.88%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 17 7 5 20 24 8 3 8 0 0 2 5 0 2 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 12 4 0 1 4 2 1 1 7 7 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 13 0 4 6 3 0 0 4 1 2 1 0 0 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 0 0 2 3 1 0 1 4 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
37 88 68 35
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
21 67 35 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 104 91 21
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPNPWFFIMLASWLTFSLIIQPKLLSFVSTNPPSNKTPTTTPTTPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 5 (9.09%)
Threonine (Thr, T)
n = 10 (18.18%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 0 1 2 2 0 1 2 0 0 0 0 1 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 1 0 0 0 0 0 0 5 3 2 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 2 0 1 2 2 0 0 0 0 0 0 0 2 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
2 17 21 16
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 26 9 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 20 18 14
COX1 (size: 1560 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.06%)
Alanine (Ala, A)
n = 50 (9.63%)
Serine (Ser, S)
n = 29 (5.59%)
Threonine (Thr, T)
n = 36 (6.94%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.13%)
Leucine (Leu, L)
n = 63 (12.14%)
Isoleucine (Ile, I)
n = 41 (7.9%)
Methionine (Met, M)
n = 23 (4.43%)
Proline (Pro, P)
n = 30 (5.78%)
Phenylalanine (Phe, F)
n = 43 (8.29%)
Tyrosine (Tyr, Y)
n = 17 (3.28%)
Tryptophan (Trp, W)
n = 17 (3.28%)
Aspartic acid (Asp, D)
n = 15 (2.89%)
Glutamic acid (Glu, E)
n = 10 (1.93%)
Asparagine (Asn, N)
n = 15 (2.89%)
Glutamine (Gln, Q)
n = 8 (1.54%)
Histidine (His, H)
n = 19 (3.66%)
Lysine (Lys, K)
n = 9 (1.73%)
Arginine (Arg, R)
n = 9 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 30 12 3 20 28 8 4 8 0 3 14 17 3 10 33
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 0 1 2 29 18 1 3 17 22 5 3 14 13 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 14 2 3 13 9 0 0 4 1 16 0 0 2 13 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 8 2 1 14 9 0 2 1 6 0 0 1 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
159 125 129 107
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
79 141 93 207
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 251 185 51
COX2 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 16 (7.08%)
Serine (Ser, S)
n = 20 (8.85%)
Threonine (Thr, T)
n = 17 (7.52%)
Cysteine (Cys, C)
n = 3 (1.33%)
Valine (Val, V)
n = 17 (7.52%)
Leucine (Leu, L)
n = 30 (13.27%)
Isoleucine (Ile, I)
n = 15 (6.64%)
Methionine (Met, M)
n = 9 (3.98%)
Proline (Pro, P)
n = 12 (5.31%)
Phenylalanine (Phe, F)
n = 9 (3.98%)
Tyrosine (Tyr, Y)
n = 8 (3.54%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 13 (5.75%)
Glutamic acid (Glu, E)
n = 13 (5.75%)
Asparagine (Asn, N)
n = 5 (2.21%)
Glutamine (Gln, Q)
n = 7 (3.1%)
Histidine (His, H)
n = 9 (3.98%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 12 6 5 10 11 4 0 6 1 2 11 4 0 0 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 4 10 2 0 2 1 5 0 0 5 6 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 8 0 0 6 10 0 0 4 0 8 1 0 1 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 12 1 1 12 4 0 0 1 5 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 64 54 42
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 61 60 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 111 84 21
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 24 (9.23%)
Serine (Ser, S)
n = 17 (6.54%)
Threonine (Thr, T)
n = 20 (7.69%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 9 7 1 9 15 5 1 8 0 2 7 7 1 2 23
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 5 14 5 0 0 10 9 0 3 5 5 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 6 1 2 5 6 0 0 4 2 9 0 0 1 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 6 2 0 4 4 0 0 3 2 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 71 55 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 70 55 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 133 93 25
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 29 (7.63%)
Serine (Ser, S)
n = 24 (6.32%)
Threonine (Thr, T)
n = 25 (6.58%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 20 (5.26%)
Leucine (Leu, L)
n = 65 (17.11%)
Isoleucine (Ile, I)
n = 34 (8.95%)
Methionine (Met, M)
n = 6 (1.58%)
Proline (Pro, P)
n = 25 (6.58%)
Phenylalanine (Phe, F)
n = 28 (7.37%)
Tyrosine (Tyr, Y)
n = 12 (3.16%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 8 (2.11%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 20 (5.26%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 30 4 7 16 38 2 2 8 0 3 10 6 1 2 26
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 4 2 21 6 0 1 10 12 1 5 10 10 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 10 0 1 15 7 0 0 1 0 12 0 0 1 19 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 7 0 0 8 10 0 2 3 3 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
88 116 96 81
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 102 78 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 210 135 30
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.62%)
Alanine (Ala, A)
n = 30 (9.23%)
Serine (Ser, S)
n = 25 (7.69%)
Threonine (Thr, T)
n = 18 (5.54%)
Cysteine (Cys, C)
n = 3 (0.92%)
Valine (Val, V)
n = 13 (4.0%)
Leucine (Leu, L)
n = 64 (19.69%)
Isoleucine (Ile, I)
n = 28 (8.62%)
Methionine (Met, M)
n = 11 (3.38%)
Proline (Pro, P)
n = 25 (7.69%)
Phenylalanine (Phe, F)
n = 18 (5.54%)
Tyrosine (Tyr, Y)
n = 14 (4.31%)
Tryptophan (Trp, W)
n = 9 (2.77%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.38%)
Asparagine (Asn, N)
n = 13 (4.0%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 3 (0.92%)
Lysine (Lys, K)
n = 7 (2.15%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 22 7 3 17 27 14 3 4 2 3 4 4 2 3 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 3 2 17 10 1 1 9 4 1 2 10 12 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 8 0 3 9 6 2 1 4 3 11 0 0 2 11 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 1 3 7 0 2 3 3 0 1 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 103 83 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 93 58 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 149 116 34
ND2 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 35 (10.14%)
Serine (Ser, S)
n = 24 (6.96%)
Threonine (Thr, T)
n = 46 (13.33%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 11 (3.19%)
Leucine (Leu, L)
n = 67 (19.42%)
Isoleucine (Ile, I)
n = 25 (7.25%)
Methionine (Met, M)
n = 17 (4.93%)
Proline (Pro, P)
n = 23 (6.67%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 6 (1.74%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 14 (4.06%)
Glutamine (Gln, Q)
n = 9 (2.61%)
Histidine (His, H)
n = 10 (2.9%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 23 12 4 21 31 8 3 7 2 1 5 4 1 1 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 2 21 10 2 0 8 2 2 0 14 9 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
26 15 1 3 12 4 1 0 4 1 5 0 0 1 13 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 3 1 0 2 13 0 0 1 1 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 109 119 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 124 58 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 177 124 21
ND3 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 35 (10.14%)
Serine (Ser, S)
n = 24 (6.96%)
Threonine (Thr, T)
n = 46 (13.33%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 11 (3.19%)
Leucine (Leu, L)
n = 67 (19.42%)
Isoleucine (Ile, I)
n = 25 (7.25%)
Methionine (Met, M)
n = 17 (4.93%)
Proline (Pro, P)
n = 23 (6.67%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 6 (1.74%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 14 (4.06%)
Glutamine (Gln, Q)
n = 9 (2.61%)
Histidine (His, H)
n = 10 (2.9%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 23 12 4 21 31 8 3 7 2 1 5 4 1 1 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 2 21 10 2 0 8 2 2 0 14 9 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
26 15 1 3 12 4 1 0 4 1 5 0 0 1 13 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 3 1 0 2 13 0 0 1 1 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 109 119 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 124 58 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 177 124 21
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 40 (8.73%)
Serine (Ser, S)
n = 39 (8.52%)
Threonine (Thr, T)
n = 39 (8.52%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 12 (2.62%)
Leucine (Leu, L)
n = 97 (21.18%)
Isoleucine (Ile, I)
n = 44 (9.61%)
Methionine (Met, M)
n = 23 (5.02%)
Proline (Pro, P)
n = 29 (6.33%)
Phenylalanine (Phe, F)
n = 14 (3.06%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 14 (3.06%)
Glutamine (Gln, Q)
n = 13 (2.84%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 12 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 36 19 8 37 37 8 7 12 1 2 7 3 0 3 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 3 2 27 10 1 4 9 4 0 2 18 9 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 15 0 0 17 10 1 2 9 1 14 1 0 2 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 7 3 0 3 10 0 1 5 5 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 157 141 79
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
55 136 78 190
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 241 159 39
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 7 (7.14%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 3 4 0 3 11 4 3 2 0 0 1 2 0 0 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 3 1 7 1 0 0 3 0 1 0 2 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 1 1 2 3 3 0 1 2 1 1 0 1 0 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 1 1 0 1 1 0 0 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 31 24 25
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 28 17 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 47 34 7
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.45%)
Alanine (Ala, A)
n = 50 (8.26%)
Serine (Ser, S)
n = 54 (8.93%)
Threonine (Thr, T)
n = 64 (10.58%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 22 (3.64%)
Leucine (Leu, L)
n = 104 (17.19%)
Isoleucine (Ile, I)
n = 56 (9.26%)
Methionine (Met, M)
n = 20 (3.31%)
Proline (Pro, P)
n = 31 (5.12%)
Phenylalanine (Phe, F)
n = 33 (5.45%)
Tyrosine (Tyr, Y)
n = 16 (2.64%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 9 (1.49%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 25 (4.13%)
Glutamine (Gln, Q)
n = 18 (2.98%)
Histidine (His, H)
n = 11 (1.82%)
Lysine (Lys, K)
n = 21 (3.47%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 47 16 6 29 61 6 2 15 3 0 9 11 2 3 30
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 4 4 32 12 2 4 11 16 2 5 17 9 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
31 25 1 2 30 12 0 0 10 1 15 2 0 1 24 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 6 0 9 19 2 0 2 5 1 1 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
126 170 197 113
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
70 189 112 235
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
31 309 220 46
ND6 (size: 516 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (17.54%)
Alanine (Ala, A)
n = 13 (7.6%)
Serine (Ser, S)
n = 13 (7.6%)
Threonine (Thr, T)
n = 3 (1.75%)
Cysteine (Cys, C)
n = 2 (1.17%)
Valine (Val, V)
n = 36 (21.05%)
Leucine (Leu, L)
n = 26 (15.2%)
Isoleucine (Ile, I)
n = 3 (1.75%)
Methionine (Met, M)
n = 6 (3.51%)
Proline (Pro, P)
n = 4 (2.34%)
Phenylalanine (Phe, F)
n = 9 (5.26%)
Tyrosine (Tyr, Y)
n = 8 (4.68%)
Tryptophan (Trp, W)
n = 4 (2.34%)
Aspartic acid (Asp, D)
n = 4 (2.34%)
Glutamic acid (Glu, E)
n = 2 (1.17%)
Asparagine (Asn, N)
n = 3 (1.75%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 5 (2.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 0 1 2 0 1 3 11 0 0 16 3 5 12 8 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 0 5 0 3 5 6 2 2 20 3 1 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 2 7 2 0 2 2 0 8 0 2 9 3 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 2 4 0 0 0 1 0 0 4 0 0 0 1 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
85 15 17 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 31 18 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
67 9 25 71
Total protein-coding genes (size: 11392 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 222 (5.85%)
Alanine (Ala, A)
n = 323 (8.51%)
Serine (Ser, S)
n = 285 (7.51%)
Threonine (Thr, T)
n = 318 (8.38%)
Cysteine (Cys, C)
n = 30 (0.79%)
Valine (Val, V)
n = 197 (5.19%)
Leucine (Leu, L)
n = 663 (17.47%)
Isoleucine (Ile, I)
n = 295 (7.77%)
Methionine (Met, M)
n = 143 (3.77%)
Proline (Pro, P)
n = 227 (5.98%)
Phenylalanine (Phe, F)
n = 220 (5.8%)
Tyrosine (Tyr, Y)
n = 114 (3.0%)
Tryptophan (Trp, W)
n = 107 (2.82%)
Aspartic acid (Asp, D)
n = 69 (1.82%)
Glutamic acid (Glu, E)
n = 90 (2.37%)
Asparagine (Asn, N)
n = 131 (3.45%)
Glutamine (Gln, Q)
n = 92 (2.42%)
Histidine (His, H)
n = 101 (2.66%)
Lysine (Lys, K)
n = 86 (2.27%)
Arginine (Arg, R)
n = 73 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
56 239 97 46 193 303 71 40 82 10 32 73 68 24 37 183
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
46 6 24 31 196 84 12 22 87 80 33 29 110 85 3 32
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
159 119 8 29 123 74 6 6 47 19 95 8 10 16 115 12
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
89 72 18 7 62 82 4 8 21 37 7 2 1 5 2 99
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
901 1106 1029 760
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
488 1100 690 1518
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
263 1816 1329 388 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​o​e​c​i​l​e​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​a​l​u​s​t​r​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.