Viewing data for Trachypithecus pileatus


Scientific name Trachypithecus pileatus
Common name Capped leaf monkey
Maximum lifespan 25.20 years (Trachypithecus pileatus@AnAge)

Total mtDNA (size: 16526 bases) GC AT G C A T
Base content (bases) 6445 10080 4336 2109 4746 5334
Base content per 1 kb (bases) 390 610 262 128 287 323
Base content (%) 39.0% 61.0%
Total protein-coding genes (size: 11331 bases) GC AT G C A T
Base content (bases) 4391 6940 3115 1276 3397 3543
Base content per 1 kb (bases) 388 612 275 113 300 313
Base content (%) 38.8% 61.2%
D-loop (size: 1064 bases) GC AT G C A T
Base content (bases) 440 623 298 142 295 328
Base content per 1 kb (bases) 414 586 280 133 277 308
Base content (%) 41.4% 58.6%
Total tRNA-coding genes (size: 1500 bases) GC AT G C A T
Base content (bases) 548 952 320 228 426 526
Base content per 1 kb (bases) 365 635 213 152 284 351
Base content (%) 36.5% 63.5%
Total rRNA-coding genes (size: 2511 bases) GC AT G C A T
Base content (bases) 1020 1491 574 446 595 896
Base content per 1 kb (bases) 406 594 229 178 237 357
Base content (%) 40.6% 59.4%
12S rRNA gene (size: 947 bases) GC AT G C A T
Base content (bases) 395 552 223 172 223 329
Base content per 1 kb (bases) 417 583 235 182 235 347
Base content (%) 41.7% 58.3%
16S rRNA gene (size: 1564 bases) GC AT G C A T
Base content (bases) 625 939 351 274 372 567
Base content per 1 kb (bases) 400 600 224 175 238 363
Base content (%) 40.0% 60.0%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 260 421 189 71 206 215
Base content per 1 kb (bases) 382 618 278 104 302 316
Base content (%) 38.2% 61.8%
ATP8 (size: 207 bases) GC AT G C A T
Base content (bases) 70 137 57 13 57 80
Base content per 1 kb (bases) 338 662 275 63 275 386
Base content (%) 33.8% 66.2%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 621 924 378 243 498 426
Base content per 1 kb (bases) 402 598 245 157 322 276
Base content (%) 40.2% 59.8%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 270 414 177 93 199 215
Base content per 1 kb (bases) 395 605 259 136 291 314
Base content (%) 39.5% 60.5%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 321 463 215 106 243 220
Base content per 1 kb (bases) 409 591 274 135 310 281
Base content (%) 40.9% 59.1%
CYTB (size: 1135 bases) GC AT G C A T
Base content (bases) 473 662 349 124 327 335
Base content per 1 kb (bases) 417 583 307 109 288 295
Base content (%) 41.7% 58.3%
ND1 (size: 955 bases) GC AT G C A T
Base content (bases) 398 557 286 112 277 280
Base content per 1 kb (bases) 417 583 299 117 290 293
Base content (%) 41.7% 58.3%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 376 666 293 83 308 358
Base content per 1 kb (bases) 361 639 281 80 296 344
Base content (%) 36.1% 63.9%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 125 221 90 35 107 114
Base content per 1 kb (bases) 361 639 260 101 309 329
Base content (%) 36.1% 63.9%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 500 878 361 139 442 436
Base content per 1 kb (bases) 363 637 262 101 321 316
Base content (%) 36.3% 63.7%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 109 188 78 31 98 90
Base content per 1 kb (bases) 367 633 263 104 330 303
Base content (%) 36.7% 63.3%
ND5 (size: 1806 bases) GC AT G C A T
Base content (bases) 687 1119 497 190 545 574
Base content per 1 kb (bases) 380 620 275 105 302 318
Base content (%) 38.0% 62.0%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 199 326 160 39 105 221
Base content per 1 kb (bases) 379 621 305 74 200 421
Base content (%) 37.9% 62.1%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.1%)
Alanine (Ala, A)
n = 17 (7.52%)
Serine (Ser, S)
n = 10 (4.42%)
Threonine (Thr, T)
n = 28 (12.39%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (5.75%)
Leucine (Leu, L)
n = 49 (21.68%)
Isoleucine (Ile, I)
n = 22 (9.73%)
Methionine (Met, M)
n = 10 (4.42%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 12 (5.31%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 2 (0.88%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 13 (5.75%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 7 (3.1%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 7 7 6 6 21 4 10 8 0 3 0 10 0 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 4 6 6 1 1 2 2 2 3 6 4 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 13 0 2 3 2 0 0 3 1 1 0 2 10 3 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 1 1 0 4 1 0 2 2 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
41 69 81 36
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 65 40 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 55 94 64
ATP8 (size: 207 bases)
Amino acid sequence: MPQLNTSTWFIIIMTMLPALYLMMQLKLLNTNYYLPPSQKTPNTQVFNNPWQLKWTKIYLPHLQSPHS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.47%)
Serine (Ser, S)
n = 4 (5.88%)
Threonine (Thr, T)
n = 7 (10.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.47%)
Leucine (Leu, L)
n = 11 (16.18%)
Isoleucine (Ile, I)
n = 4 (5.88%)
Methionine (Met, M)
n = 5 (7.35%)
Proline (Pro, P)
n = 8 (11.76%)
Phenylalanine (Phe, F)
n = 2 (2.94%)
Tyrosine (Tyr, Y)
n = 4 (5.88%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 6 (8.82%)
Glutamine (Gln, Q)
n = 6 (8.82%)
Histidine (His, H)
n = 2 (2.94%)
Lysine (Lys, K)
n = 4 (5.88%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 1 1 1 0 6 0 4 4 2 0 0 1 0 1 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 0 0 1 0 0 0 0 0 3 3 2 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 4 1 1 2 1 0 0 0 3 1 1 0 3 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 0 0 0 4 0 0 0 0 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
2 23 26 18
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 20 23 23
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 14 31 16
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 41 (7.98%)
Serine (Ser, S)
n = 33 (6.42%)
Threonine (Thr, T)
n = 33 (6.42%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.81%)
Leucine (Leu, L)
n = 62 (12.06%)
Isoleucine (Ile, I)
n = 40 (7.78%)
Methionine (Met, M)
n = 30 (5.84%)
Proline (Pro, P)
n = 30 (5.84%)
Phenylalanine (Phe, F)
n = 41 (7.98%)
Tyrosine (Tyr, Y)
n = 20 (3.89%)
Tryptophan (Trp, W)
n = 16 (3.11%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 8 (1.56%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.7%)
Lysine (Lys, K)
n = 11 (2.14%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
31 9 27 11 5 24 6 14 7 0 6 9 19 1 21 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 14 14 12 1 10 14 20 3 11 10 8 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 14 1 9 8 12 0 1 3 15 5 0 2 13 4 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 6 2 9 6 10 1 2 3 3 0 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
146 110 135 124
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 133 98 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 135 193 166
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 12 (5.29%)
Serine (Ser, S)
n = 13 (5.73%)
Threonine (Thr, T)
n = 20 (8.81%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 32 (14.1%)
Isoleucine (Ile, I)
n = 24 (10.57%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 9 (3.96%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 7 9 4 3 16 1 8 7 0 4 5 3 1 7 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 5 4 3 0 5 2 2 2 3 4 8 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 11 0 2 3 5 0 0 3 3 6 0 0 3 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 7 4 4 5 3 1 1 1 4 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 59 69 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 58 55 89
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 60 91 66
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (6.92%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 18 (6.92%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 14 (5.38%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 10 10 6 4 12 1 9 7 1 7 3 4 0 14 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 4 5 3 1 3 8 4 3 3 4 5 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 12 0 4 4 5 1 0 4 4 10 0 1 3 3 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 7 0 1 3 3 0 2 1 2 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 66 66 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 64 59 98
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 85 95 71
CYTB (size: 1135 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (5.57%)
Alanine (Ala, A)
n = 21 (5.57%)
Serine (Ser, S)
n = 29 (7.69%)
Threonine (Thr, T)
n = 34 (9.02%)
Cysteine (Cys, C)
n = 3 (0.8%)
Valine (Val, V)
n = 11 (2.92%)
Leucine (Leu, L)
n = 64 (16.98%)
Isoleucine (Ile, I)
n = 38 (10.08%)
Methionine (Met, M)
n = 14 (3.71%)
Proline (Pro, P)
n = 26 (6.9%)
Phenylalanine (Phe, F)
n = 24 (6.37%)
Tyrosine (Tyr, Y)
n = 14 (3.71%)
Tryptophan (Trp, W)
n = 11 (2.92%)
Aspartic acid (Asp, D)
n = 9 (2.39%)
Glutamic acid (Glu, E)
n = 4 (1.06%)
Asparagine (Asn, N)
n = 19 (5.04%)
Glutamine (Gln, Q)
n = 9 (2.39%)
Histidine (His, H)
n = 11 (2.92%)
Lysine (Lys, K)
n = 9 (2.39%)
Arginine (Arg, R)
n = 7 (1.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 17 12 7 17 27 3 10 6 3 1 3 6 1 11 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 2 8 11 0 3 11 7 0 2 9 15 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 13 1 7 10 7 0 1 4 8 6 1 0 8 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 0 3 6 9 0 1 2 4 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 107 119 86
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
47 105 75 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 137 141 89
ND1 (size: 955 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.1%)
Alanine (Ala, A)
n = 28 (8.83%)
Serine (Ser, S)
n = 21 (6.62%)
Threonine (Thr, T)
n = 35 (11.04%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 9 (2.84%)
Leucine (Leu, L)
n = 60 (18.93%)
Isoleucine (Ile, I)
n = 23 (7.26%)
Methionine (Met, M)
n = 15 (4.73%)
Proline (Pro, P)
n = 21 (6.62%)
Phenylalanine (Phe, F)
n = 20 (6.31%)
Tyrosine (Tyr, Y)
n = 11 (3.47%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 4 (1.26%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 12 (3.79%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 8 (2.52%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 8 12 11 13 21 0 14 5 1 2 2 5 0 9 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 4 13 10 1 1 4 6 2 6 11 3 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 16 1 3 5 11 0 0 2 8 3 0 1 4 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 8 3 2 2 6 1 1 2 5 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 84 94 75
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 103 55 127
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 99 131 74
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 16 (4.62%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 46 (13.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (1.16%)
Leucine (Leu, L)
n = 63 (18.21%)
Isoleucine (Ile, I)
n = 37 (10.69%)
Methionine (Met, M)
n = 28 (8.09%)
Proline (Pro, P)
n = 20 (5.78%)
Phenylalanine (Phe, F)
n = 12 (3.47%)
Tyrosine (Tyr, Y)
n = 12 (3.47%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 22 (6.36%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 12 26 8 16 21 4 12 10 1 2 1 1 0 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 10 5 1 2 6 4 0 5 6 7 2 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 21 0 7 8 8 1 0 4 9 3 0 2 14 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 1 0 0 11 1 0 3 0 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
38 87 149 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 106 67 144
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 100 142 90
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 16 (4.62%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 46 (13.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (1.16%)
Leucine (Leu, L)
n = 63 (18.21%)
Isoleucine (Ile, I)
n = 37 (10.69%)
Methionine (Met, M)
n = 28 (8.09%)
Proline (Pro, P)
n = 20 (5.78%)
Phenylalanine (Phe, F)
n = 12 (3.47%)
Tyrosine (Tyr, Y)
n = 12 (3.47%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 22 (6.36%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 12 26 8 16 21 4 12 10 1 2 1 1 0 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 10 5 1 2 6 4 0 5 6 7 2 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 21 0 7 8 8 1 0 4 9 3 0 2 14 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 1 0 0 11 1 0 3 0 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
38 87 149 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 106 67 144
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 100 142 90
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (3.49%)
Alanine (Ala, A)
n = 27 (5.9%)
Serine (Ser, S)
n = 44 (9.61%)
Threonine (Thr, T)
n = 47 (10.26%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 12 (2.62%)
Leucine (Leu, L)
n = 86 (18.78%)
Isoleucine (Ile, I)
n = 39 (8.52%)
Methionine (Met, M)
n = 40 (8.73%)
Proline (Pro, P)
n = 21 (4.59%)
Phenylalanine (Phe, F)
n = 23 (5.02%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 21 (4.59%)
Glutamine (Gln, Q)
n = 9 (1.97%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 13 31 18 12 31 1 23 9 0 4 0 7 1 15 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 1 3 3 12 12 0 3 9 4 0 6 11 4 0 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 21 0 8 11 10 1 7 7 11 3 1 1 12 9 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 7 2 0 2 9 1 0 2 8 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 115 171 107
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
56 125 78 200
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 121 187 134
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 9 (9.18%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 6 8 3 3 10 0 7 1 0 1 0 2 1 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 3 3 3 0 1 2 1 0 1 2 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 1 0 6 0 1 0 3 0 0 0 2 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 25 29 25
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 23 18 49
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
2 30 43 24
ND5 (size: 1806 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.33%)
Alanine (Ala, A)
n = 36 (5.99%)
Serine (Ser, S)
n = 44 (7.32%)
Threonine (Thr, T)
n = 57 (9.48%)
Cysteine (Cys, C)
n = 6 (1.0%)
Valine (Val, V)
n = 15 (2.5%)
Leucine (Leu, L)
n = 102 (16.97%)
Isoleucine (Ile, I)
n = 61 (10.15%)
Methionine (Met, M)
n = 42 (6.99%)
Proline (Pro, P)
n = 27 (4.49%)
Phenylalanine (Phe, F)
n = 39 (6.49%)
Tyrosine (Tyr, Y)
n = 18 (3.0%)
Tryptophan (Trp, W)
n = 12 (2.0%)
Aspartic acid (Asp, D)
n = 13 (2.16%)
Glutamic acid (Glu, E)
n = 9 (1.5%)
Asparagine (Asn, N)
n = 33 (5.49%)
Glutamine (Gln, Q)
n = 18 (3.0%)
Histidine (His, H)
n = 15 (2.5%)
Lysine (Lys, K)
n = 20 (3.33%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
35 26 37 22 14 43 7 15 14 4 2 3 10 0 23 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 6 5 18 12 1 11 6 8 1 1 14 12 0 15
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
25 15 2 7 9 16 0 4 8 10 8 1 1 15 18 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 3 4 9 18 2 2 2 4 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 154 225 124
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
64 152 127 259
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 191 222 162
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.94%)
Alanine (Ala, A)
n = 8 (4.6%)
Serine (Ser, S)
n = 11 (6.32%)
Threonine (Thr, T)
n = 5 (2.87%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 27 (15.52%)
Leucine (Leu, L)
n = 23 (13.22%)
Isoleucine (Ile, I)
n = 12 (6.9%)
Methionine (Met, M)
n = 11 (6.32%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 9 (5.17%)
Tyrosine (Tyr, Y)
n = 12 (6.9%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 3 (1.72%)
Glutamic acid (Glu, E)
n = 10 (5.75%)
Asparagine (Asn, N)
n = 4 (2.3%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 3 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 0 5 0 0 0 1 13 0 0 15 1 3 8 9 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 3 0 3 2 13 2 4 7 3 0 0 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 4 0 3 0 3 1 9 3 4 9 4 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 8 2 1 0 1 2 0 1 0 1 0 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 7 38 56
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 23 30 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 9 37 83
Total protein-coding genes (size: 11385 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 204 (5.38%)
Alanine (Ala, A)
n = 236 (6.22%)
Serine (Ser, S)
n = 267 (7.04%)
Threonine (Thr, T)
n = 350 (9.23%)
Cysteine (Cys, C)
n = 23 (0.61%)
Valine (Val, V)
n = 160 (4.22%)
Leucine (Leu, L)
n = 634 (16.72%)
Isoleucine (Ile, I)
n = 338 (8.91%)
Methionine (Met, M)
n = 231 (6.09%)
Proline (Pro, P)
n = 209 (5.51%)
Phenylalanine (Phe, F)
n = 226 (5.96%)
Tyrosine (Tyr, Y)
n = 136 (3.59%)
Tryptophan (Trp, W)
n = 101 (2.66%)
Aspartic acid (Asp, D)
n = 64 (1.69%)
Glutamic acid (Glu, E)
n = 85 (2.24%)
Asparagine (Asn, N)
n = 174 (4.59%)
Glutamine (Gln, Q)
n = 92 (2.43%)
Histidine (His, H)
n = 102 (2.69%)
Lysine (Lys, K)
n = 90 (2.37%)
Arginine (Arg, R)
n = 64 (1.69%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
217 121 191 99 95 245 31 145 80 12 47 28 72 13 133 93
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
40 3 20 50 94 84 8 54 67 62 21 50 83 70 6 85
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
111 148 6 55 64 89 3 17 39 85 51 9 19 93 81 38
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
64 61 24 29 35 80 10 11 20 33 0 1 0 6 0 92
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
749 937 1240 867
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
449 1006 749 1589
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
202 1066 1459 1066 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​r​a​c​h​y​p​i​t​h​e​c​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​i​l​e​a​t​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.