Viewing data for Hippoglossus stenolepis


Scientific name Hippoglossus stenolepis
Common name Pacific halibut
Maximum lifespan 42.00 years (Hippoglossus stenolepis@AnAge)

Total mtDNA (size: 17841 bases) GC AT G C A T
Base content (bases) 8156 9685 5206 2950 4719 4966
Base content per 1 kb (bases) 457 543 292 165 265 278
Base content (%) 45.7% 54.3%
Total protein-coding genes (size: 11422 bases) GC AT G C A T
Base content (bases) 5306 6116 3477 1829 3165 2951
Base content per 1 kb (bases) 465 535 304 160 277 258
Base content (%) 46.5% 53.5%
D-loop (size: 2135 bases) GC AT G C A T
Base content (bases) 864 1271 629 235 595 676
Base content per 1 kb (bases) 405 595 295 110 279 317
Base content (%) 40.5% 59.5%
Total tRNA-coding genes (size: 1550 bases) GC AT G C A T
Base content (bases) 706 844 392 314 379 465
Base content per 1 kb (bases) 455 545 253 203 245 300
Base content (%) 45.5% 54.5%
Total rRNA-coding genes (size: 2664 bases) GC AT G C A T
Base content (bases) 1250 1414 687 563 566 848
Base content per 1 kb (bases) 469 531 258 211 212 318
Base content (%) 46.9% 53.1%
12S rRNA gene (size: 949 bases) GC AT G C A T
Base content (bases) 453 496 248 205 197 299
Base content per 1 kb (bases) 477 523 261 216 208 315
Base content (%) 47.7% 52.3%
16S rRNA gene (size: 1715 bases) GC AT G C A T
Base content (bases) 797 918 439 358 369 549
Base content per 1 kb (bases) 465 535 256 209 215 320
Base content (%) 46.5% 53.5%

ATP6 (size: 683 bases) GC AT G C A T
Base content (bases) 320 363 224 96 198 165
Base content per 1 kb (bases) 469 531 328 141 290 242
Base content (%) 46.9% 53.1%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 68 100 51 17 45 55
Base content per 1 kb (bases) 405 595 304 101 268 327
Base content (%) 40.5% 59.5%
COX1 (size: 1566 bases) GC AT G C A T
Base content (bases) 717 849 425 292 457 392
Base content per 1 kb (bases) 458 542 271 186 292 250
Base content (%) 45.8% 54.2%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 299 392 184 115 187 205
Base content per 1 kb (bases) 433 567 266 166 271 297
Base content (%) 43.3% 56.7%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 371 414 239 132 220 194
Base content per 1 kb (bases) 473 527 304 168 280 247
Base content (%) 47.3% 52.7%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 519 622 343 176 354 268
Base content per 1 kb (bases) 455 545 301 154 310 235
Base content (%) 45.5% 54.5%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 452 523 292 160 284 239
Base content per 1 kb (bases) 464 536 299 164 291 245
Base content (%) 46.4% 53.6%
ND2 (size: 1046 bases) GC AT G C A T
Base content (bases) 526 520 377 149 267 253
Base content per 1 kb (bases) 503 497 360 142 255 242
Base content (%) 50.3% 49.7%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 170 179 111 59 104 75
Base content per 1 kb (bases) 487 513 318 169 298 215
Base content (%) 48.7% 51.3%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 650 731 420 230 381 350
Base content per 1 kb (bases) 471 529 304 167 276 253
Base content (%) 47.1% 52.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 143 154 98 45 88 66
Base content per 1 kb (bases) 481 519 330 152 296 222
Base content (%) 48.1% 51.9%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 836 1003 551 285 499 504
Base content per 1 kb (bases) 455 545 300 155 271 274
Base content (%) 45.5% 54.5%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 240 282 165 75 87 195
Base content per 1 kb (bases) 460 540 316 144 167 374
Base content (%) 46.0% 54.0%

ATP6 (size: 683 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 18 (7.96%)
Serine (Ser, S)
n = 11 (4.87%)
Threonine (Thr, T)
n = 19 (8.41%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 17 (7.52%)
Leucine (Leu, L)
n = 51 (22.57%)
Isoleucine (Ile, I)
n = 18 (7.96%)
Methionine (Met, M)
n = 9 (3.98%)
Proline (Pro, P)
n = 17 (7.52%)
Phenylalanine (Phe, F)
n = 14 (6.19%)
Tyrosine (Tyr, Y)
n = 4 (1.77%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 8 (3.54%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 4 (1.77%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 6 7 12 15 18 2 4 9 0 7 5 4 1 5 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 5 6 6 1 1 6 2 2 4 6 6 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 6 4 1 2 1 2 0 5 2 2 1 0 3 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 1 0 1 0 1 0 3 3 0 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 83 60 33
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 60 31 109
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 81 73 55
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWMIFLTVIPPKVLAHTYPNEPTSQSTQKPKTEPWNWPWY*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 5 (9.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 4 (7.27%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 2 (3.64%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 3 (5.45%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 1 1 0 0 0 1 3 3 0 3 0 0 0 2 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 3 0 0 0 0 0 3 6 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 1 1 0 0 0 1 1 1 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
8 15 17 16
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 20 15 15
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 16 23 14
COX1 (size: 1566 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.21%)
Alanine (Ala, A)
n = 47 (9.02%)
Serine (Ser, S)
n = 26 (4.99%)
Threonine (Thr, T)
n = 40 (7.68%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.68%)
Leucine (Leu, L)
n = 64 (12.28%)
Isoleucine (Ile, I)
n = 42 (8.06%)
Methionine (Met, M)
n = 25 (4.8%)
Proline (Pro, P)
n = 27 (5.18%)
Phenylalanine (Phe, F)
n = 42 (8.06%)
Tyrosine (Tyr, Y)
n = 19 (3.65%)
Tryptophan (Trp, W)
n = 17 (3.26%)
Aspartic acid (Asp, D)
n = 14 (2.69%)
Glutamic acid (Glu, E)
n = 11 (2.11%)
Asparagine (Asn, N)
n = 16 (3.07%)
Glutamine (Gln, Q)
n = 6 (1.15%)
Histidine (His, H)
n = 18 (3.45%)
Lysine (Lys, K)
n = 9 (1.73%)
Arginine (Arg, R)
n = 9 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 13 15 16 16 13 11 8 5 1 10 11 17 2 25 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 0 1 6 22 17 2 8 13 17 10 4 14 7 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 20 2 5 7 7 2 2 3 6 13 3 0 6 10 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 9 2 5 9 7 2 2 1 4 2 1 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
160 116 138 108
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
81 135 93 213
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 174 161 136
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 9 (3.93%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 19 (8.3%)
Leucine (Leu, L)
n = 27 (11.79%)
Isoleucine (Ile, I)
n = 24 (10.48%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 7 (3.06%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 14 (6.11%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 7 9 6 4 8 2 5 7 1 6 4 9 0 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 5 6 6 1 1 3 4 1 1 8 4 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 7 0 4 3 4 1 1 3 1 6 2 2 1 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 13 2 2 12 4 0 0 1 5 0 0 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 58 55 42
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 53 62 89
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 73 88 55
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (8.85%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 6 (2.31%)
Proline (Pro, P)
n = 14 (5.38%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 18 (6.92%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 5 5 10 4 8 2 8 8 0 5 8 3 0 7 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 0 5 8 8 0 1 12 5 5 2 7 4 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 10 1 5 1 4 0 0 3 3 6 0 1 0 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 6 2 0 5 3 0 0 1 2 2 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 69 54 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 69 53 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 101 86 59
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 30 (7.92%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 27 (7.12%)
Leucine (Leu, L)
n = 63 (16.62%)
Isoleucine (Ile, I)
n = 25 (6.6%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 31 (8.18%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 11 4 17 17 13 4 11 6 0 10 10 7 0 14 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 1 5 13 11 1 5 7 10 4 3 10 8 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 5 1 9 7 5 1 1 2 3 11 1 1 5 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 3 2 2 9 8 2 2 1 4 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 99 87 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 98 74 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 146 107 103
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 20 (6.17%)
Leucine (Leu, L)
n = 60 (18.52%)
Isoleucine (Ile, I)
n = 28 (8.64%)
Methionine (Met, M)
n = 8 (2.47%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 19 (5.86%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 9 4 13 13 17 7 4 7 0 1 7 9 3 7 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 8 14 11 1 3 7 4 4 8 6 8 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 7 1 6 4 5 3 1 2 4 7 0 6 4 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 8 3 1 3 7 0 2 0 5 1 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 93 78 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 96 57 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 103 104 82
ND2 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 41 (11.82%)
Serine (Ser, S)
n = 16 (4.61%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (4.03%)
Leucine (Leu, L)
n = 75 (21.61%)
Isoleucine (Ile, I)
n = 18 (5.19%)
Methionine (Met, M)
n = 12 (3.46%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 16 (4.61%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 15 (4.32%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 5 7 16 30 15 6 5 11 4 4 7 3 0 10 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 5 20 15 1 4 9 5 0 3 16 4 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 12 5 1 5 6 1 2 1 1 7 2 3 3 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 1 0 3 5 4 1 1 1 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 116 96 56
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 122 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 139 101 75
ND3 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 41 (11.82%)
Serine (Ser, S)
n = 16 (4.61%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (4.03%)
Leucine (Leu, L)
n = 75 (21.61%)
Isoleucine (Ile, I)
n = 18 (5.19%)
Methionine (Met, M)
n = 12 (3.46%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 16 (4.61%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 15 (4.32%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 5 7 16 30 15 6 5 11 4 4 7 3 0 10 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 5 20 15 1 4 9 5 0 3 16 4 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 12 5 1 5 6 1 2 1 1 7 2 3 3 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 1 0 3 5 4 1 1 1 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 116 96 56
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 122 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 139 101 75
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (5.66%)
Alanine (Ala, A)
n = 38 (8.28%)
Serine (Ser, S)
n = 36 (7.84%)
Threonine (Thr, T)
n = 40 (8.71%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 18 (3.92%)
Leucine (Leu, L)
n = 100 (21.79%)
Isoleucine (Ile, I)
n = 30 (6.54%)
Methionine (Met, M)
n = 24 (5.23%)
Proline (Pro, P)
n = 25 (5.45%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 19 (4.14%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 13 (2.83%)
Asparagine (Asn, N)
n = 10 (2.18%)
Glutamine (Gln, Q)
n = 9 (1.96%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 15 13 23 23 24 9 15 5 4 5 7 5 1 8 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 2 3 7 13 16 2 3 12 6 5 4 11 9 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 14 3 4 6 11 5 2 8 5 9 6 6 0 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 11 2 0 4 7 4 1 5 4 1 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 135 125 101
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 129 72 188
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
60 156 153 91
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 25 (25.51%)
Isoleucine (Ile, I)
n = 1 (1.02%)
Methionine (Met, M)
n = 4 (4.08%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 3 8 3 7 3 3 3 0 0 0 1 0 6 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 3 6 4 0 2 1 1 1 0 1 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 2 1 1 4 4 0 0 2 0 0 0 1 1 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 0 0 2 0 0 0 0 2 1 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
23 33 17 26
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 32 14 39
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 33 35 23
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.39%)
Alanine (Ala, A)
n = 57 (9.31%)
Serine (Ser, S)
n = 41 (6.7%)
Threonine (Thr, T)
n = 59 (9.64%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 29 (4.74%)
Leucine (Leu, L)
n = 88 (14.38%)
Isoleucine (Ile, I)
n = 48 (7.84%)
Methionine (Met, M)
n = 31 (5.07%)
Proline (Pro, P)
n = 34 (5.56%)
Phenylalanine (Phe, F)
n = 42 (6.86%)
Tyrosine (Tyr, Y)
n = 11 (1.8%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 11 (1.8%)
Glutamic acid (Glu, E)
n = 14 (2.29%)
Asparagine (Asn, N)
n = 30 (4.9%)
Glutamine (Gln, Q)
n = 17 (2.78%)
Histidine (His, H)
n = 16 (2.61%)
Lysine (Lys, K)
n = 18 (2.94%)
Arginine (Arg, R)
n = 13 (2.12%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 28 20 20 17 26 9 12 15 2 6 7 13 3 17 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 2 4 14 19 22 2 2 15 11 5 13 14 5 2 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 23 4 11 12 3 3 4 8 3 8 5 4 10 20 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 7 7 7 4 15 3 1 3 6 3 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
144 152 198 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 179 118 238
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
63 220 188 142
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 16 (9.25%)
Serine (Ser, S)
n = 16 (9.25%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 24 (13.87%)
Leucine (Leu, L)
n = 30 (17.34%)
Isoleucine (Ile, I)
n = 3 (1.73%)
Methionine (Met, M)
n = 8 (4.62%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 9 (5.2%)
Tryptophan (Trp, W)
n = 7 (4.05%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 3 2 1 1 1 15 0 0 9 5 8 2 8 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 7 1 5 3 4 2 5 14 1 1 1 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 7 2 2 1 2 2 5 4 6 10 1 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 5 2 0 0 0 0 0 3 1 0 0 0 1 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 15 21 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 38 20 75
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 22 46 55
Total protein-coding genes (size: 11443 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 248 (6.51%)
Alanine (Ala, A)
n = 346 (9.08%)
Serine (Ser, S)
n = 243 (6.38%)
Threonine (Thr, T)
n = 306 (8.03%)
Cysteine (Cys, C)
n = 23 (0.6%)
Valine (Val, V)
n = 231 (6.06%)
Leucine (Leu, L)
n = 649 (17.03%)
Isoleucine (Ile, I)
n = 264 (6.93%)
Methionine (Met, M)
n = 151 (3.96%)
Proline (Pro, P)
n = 225 (5.91%)
Phenylalanine (Phe, F)
n = 242 (6.35%)
Tyrosine (Tyr, Y)
n = 110 (2.89%)
Tryptophan (Trp, W)
n = 122 (3.2%)
Aspartic acid (Asp, D)
n = 75 (1.97%)
Glutamic acid (Glu, E)
n = 101 (2.65%)
Asparagine (Asn, N)
n = 113 (2.97%)
Glutamine (Gln, Q)
n = 94 (2.47%)
Histidine (His, H)
n = 107 (2.81%)
Lysine (Lys, K)
n = 76 (1.99%)
Arginine (Arg, R)
n = 79 (2.07%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
159 105 92 151 151 158 60 95 82 12 66 72 80 13 120 122
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
59 9 14 73 133 125 15 36 89 71 52 49 101 61 14 63
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
108 113 22 55 56 55 21 15 41 34 76 27 34 35 78 23
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
84 72 29 20 55 60 16 9 16 39 15 1 0 3 2 95
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1001 1025 967 818
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
529 1064 681 1537
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
391 1301 1202 917 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​i​p​p​o​g​l​o​s​s​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ s​t​e​n​o​l​e​p​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.