Viewing data for Hylobates lar


Scientific name Hylobates lar
Common name White-handed gibbon
Maximum lifespan 56.00 years (Hylobates lar@AnAge)

Total mtDNA (size: 16472 bases) GC AT G C A T
Base content (bases) 7487 8985 5231 2256 3946 5039
Base content per 1 kb (bases) 455 545 318 137 240 306
Base content (%) 45.5% 54.5%
Total protein-coding genes (size: 11344 bases) GC AT G C A T
Base content (bases) 5215 6129 3817 1398 2780 3349
Base content per 1 kb (bases) 460 540 336 123 245 295
Base content (%) 46.0% 54.0%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1503 bases) GC AT G C A T
Base content (bases) 598 905 364 234 386 519
Base content per 1 kb (bases) 398 602 242 156 257 345
Base content (%) 39.8% 60.2%
Total rRNA-coding genes (size: 2509 bases) GC AT G C A T
Base content (bases) 1130 1379 668 462 527 852
Base content per 1 kb (bases) 450 550 266 184 210 340
Base content (%) 45.0% 55.0%
12S rRNA gene (size: 951 bases) GC AT G C A T
Base content (bases) 445 506 260 185 196 310
Base content per 1 kb (bases) 468 532 273 195 206 326
Base content (%) 46.8% 53.2%
16S rRNA gene (size: 1558 bases) GC AT G C A T
Base content (bases) 685 873 408 277 331 542
Base content per 1 kb (bases) 440 560 262 178 212 348
Base content (%) 44.0% 56.0%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 310 371 237 73 164 207
Base content per 1 kb (bases) 455 545 348 107 241 304
Base content (%) 45.5% 54.5%
ATP8 (size: 207 bases) GC AT G C A T
Base content (bases) 87 120 72 15 46 74
Base content per 1 kb (bases) 420 580 348 72 222 357
Base content (%) 42.0% 58.0%
COX1 (size: 1542 bases) GC AT G C A T
Base content (bases) 734 808 471 263 413 395
Base content per 1 kb (bases) 476 524 305 171 268 256
Base content (%) 47.6% 52.4%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 314 370 210 104 172 198
Base content per 1 kb (bases) 459 541 307 152 251 289
Base content (%) 45.9% 54.1%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 380 404 261 119 198 206
Base content per 1 kb (bases) 485 515 333 152 253 263
Base content (%) 48.5% 51.5%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 533 608 381 152 282 326
Base content per 1 kb (bases) 467 533 334 133 247 286
Base content (%) 46.7% 53.3%
ND1 (size: 957 bases) GC AT G C A T
Base content (bases) 446 511 339 107 227 284
Base content per 1 kb (bases) 466 534 354 112 237 297
Base content (%) 46.6% 53.4%
ND2 (size: 1044 bases) GC AT G C A T
Base content (bases) 470 574 357 113 247 327
Base content per 1 kb (bases) 450 550 342 108 237 313
Base content (%) 45.0% 55.0%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 146 200 106 40 91 109
Base content per 1 kb (bases) 422 578 306 116 263 315
Base content (%) 42.2% 57.8%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 621 757 480 141 349 408
Base content per 1 kb (bases) 451 549 348 102 253 296
Base content (%) 45.1% 54.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 131 166 94 37 84 82
Base content per 1 kb (bases) 441 559 316 125 283 276
Base content (%) 44.1% 55.9%
ND5 (size: 1812 bases) GC AT G C A T
Base content (bases) 823 989 630 193 432 557
Base content per 1 kb (bases) 454 546 348 107 238 307
Base content (%) 45.4% 54.6%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 240 285 194 46 90 195
Base content per 1 kb (bases) 457 543 370 88 171 371
Base content (%) 45.7% 54.3%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 21 (9.29%)
Serine (Ser, S)
n = 11 (4.87%)
Threonine (Thr, T)
n = 33 (14.6%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (3.54%)
Leucine (Leu, L)
n = 44 (19.47%)
Isoleucine (Ile, I)
n = 24 (10.62%)
Methionine (Met, M)
n = 10 (4.42%)
Proline (Pro, P)
n = 15 (6.64%)
Phenylalanine (Phe, F)
n = 9 (3.98%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 10 (4.42%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 6 (2.65%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 11 8 5 8 20 5 6 6 2 0 2 5 1 3 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 10 8 0 1 5 2 0 2 10 3 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 11 2 0 5 3 0 0 3 0 3 0 0 4 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 3 0 0 1 3 2 0 1 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
41 71 85 30
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
18 77 37 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 89 85 39
ATP8 (size: 207 bases)
Amino acid sequence: MPQLNTTVWPTIIMSMLLALFLLMQLKTLNTHYHPPASPKLTNIKPHNNPWEHKWTKIYSLHSLPPQF*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (2.94%)
Serine (Ser, S)
n = 4 (5.88%)
Threonine (Thr, T)
n = 7 (10.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.47%)
Leucine (Leu, L)
n = 11 (16.18%)
Isoleucine (Ile, I)
n = 4 (5.88%)
Methionine (Met, M)
n = 4 (5.88%)
Proline (Pro, P)
n = 9 (13.24%)
Phenylalanine (Phe, F)
n = 2 (2.94%)
Tyrosine (Tyr, Y)
n = 2 (2.94%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.47%)
Asparagine (Asn, N)
n = 5 (7.35%)
Glutamine (Gln, Q)
n = 3 (4.41%)
Histidine (His, H)
n = 5 (7.35%)
Lysine (Lys, K)
n = 5 (7.35%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 3 3 2 4 3 1 1 2 1 0 0 0 1 0 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 1 0 0 0 0 0 2 4 3 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 2 0 1 2 1 0 0 1 1 0 0 3 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 1 0 0 0 5 0 0 0 0 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
4 27 25 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 22 22 22
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 23 27 11
COX1 (size: 1542 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.97%)
Alanine (Ala, A)
n = 41 (7.99%)
Serine (Ser, S)
n = 32 (6.24%)
Threonine (Thr, T)
n = 34 (6.63%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 36 (7.02%)
Leucine (Leu, L)
n = 61 (11.89%)
Isoleucine (Ile, I)
n = 38 (7.41%)
Methionine (Met, M)
n = 30 (5.85%)
Proline (Pro, P)
n = 30 (5.85%)
Phenylalanine (Phe, F)
n = 42 (8.19%)
Tyrosine (Tyr, Y)
n = 21 (4.09%)
Tryptophan (Trp, W)
n = 16 (3.12%)
Aspartic acid (Asp, D)
n = 16 (3.12%)
Glutamic acid (Glu, E)
n = 9 (1.75%)
Asparagine (Asn, N)
n = 16 (3.12%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.7%)
Lysine (Lys, K)
n = 10 (1.95%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 19 26 5 15 22 11 7 7 0 3 16 16 1 11 31
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 5 28 8 0 4 20 18 4 5 15 6 4 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 13 5 6 12 9 1 0 4 9 12 5 1 4 12 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 8 1 6 10 8 2 2 2 4 0 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
148 117 133 116
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 133 98 207
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 221 164 90
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 14 (6.17%)
Serine (Ser, S)
n = 11 (4.85%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 33 (14.54%)
Isoleucine (Ile, I)
n = 22 (9.69%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 12 (5.29%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 15 7 5 7 15 4 2 7 0 1 8 3 1 5 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 3 8 3 0 2 3 0 6 4 3 7 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 11 1 2 4 3 0 0 2 3 6 1 0 1 6 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 10 2 3 7 4 0 1 3 2 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 65 65 38
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 59 56 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 86 77 46
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 16 (6.15%)
Serine (Ser, S)
n = 20 (7.69%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 13 8 3 8 17 6 1 9 0 2 5 5 2 7 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 3 9 2 2 0 9 7 3 5 4 3 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 9 2 1 8 7 0 0 4 4 6 3 0 2 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 7 0 1 2 3 0 0 3 2 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 77 62 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 68 55 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 116 89 37
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 29 (7.65%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 27 (7.12%)
Cysteine (Cys, C)
n = 2 (0.53%)
Valine (Val, V)
n = 15 (3.96%)
Leucine (Leu, L)
n = 66 (17.41%)
Isoleucine (Ile, I)
n = 34 (8.97%)
Methionine (Met, M)
n = 16 (4.22%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 23 (6.07%)
Tyrosine (Tyr, Y)
n = 17 (4.49%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 4 (1.06%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 10 (2.64%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 7 (1.85%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 27 13 6 18 32 3 5 6 4 0 5 9 1 11 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 4 16 9 0 3 12 8 1 3 8 10 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 14 2 1 9 10 0 0 5 3 14 1 2 4 13 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 3 1 3 6 9 0 0 4 2 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 110 108 81
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 99 77 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 172 141 46
ND1 (size: 957 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.77%)
Alanine (Ala, A)
n = 24 (7.55%)
Serine (Ser, S)
n = 21 (6.6%)
Threonine (Thr, T)
n = 38 (11.95%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 7 (2.2%)
Leucine (Leu, L)
n = 62 (19.5%)
Isoleucine (Ile, I)
n = 26 (8.18%)
Methionine (Met, M)
n = 16 (5.03%)
Proline (Pro, P)
n = 21 (6.6%)
Phenylalanine (Phe, F)
n = 16 (5.03%)
Tyrosine (Tyr, Y)
n = 13 (4.09%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 14 (4.4%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 3 (0.94%)
Lysine (Lys, K)
n = 7 (2.2%)
Arginine (Arg, R)
n = 8 (2.52%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 18 11 3 17 30 4 7 4 2 0 3 4 0 4 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 3 15 6 0 1 8 3 0 1 13 7 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 13 0 5 4 8 1 0 3 6 7 1 1 2 12 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 9 2 0 3 6 1 0 3 5 0 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 92 104 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 101 58 127
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 146 122 34
ND2 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.03%)
Alanine (Ala, A)
n = 22 (6.34%)
Serine (Ser, S)
n = 26 (7.49%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (4.03%)
Leucine (Leu, L)
n = 61 (17.58%)
Isoleucine (Ile, I)
n = 33 (9.51%)
Methionine (Met, M)
n = 21 (6.05%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 15 (4.32%)
Tyrosine (Tyr, Y)
n = 10 (2.88%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 20 (5.76%)
Glutamine (Gln, Q)
n = 10 (2.88%)
Histidine (His, H)
n = 3 (0.86%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 25 18 6 19 22 8 6 7 3 1 2 8 3 4 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 4 11 7 0 1 5 7 1 1 11 11 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 14 1 3 11 9 0 0 3 2 8 2 0 3 17 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 6 0 0 1 10 2 0 4 0 0 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 95 130 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 109 63 144
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 153 134 37
ND3 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.03%)
Alanine (Ala, A)
n = 22 (6.34%)
Serine (Ser, S)
n = 26 (7.49%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (4.03%)
Leucine (Leu, L)
n = 61 (17.58%)
Isoleucine (Ile, I)
n = 33 (9.51%)
Methionine (Met, M)
n = 21 (6.05%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 15 (4.32%)
Tyrosine (Tyr, Y)
n = 10 (2.88%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 20 (5.76%)
Glutamine (Gln, Q)
n = 10 (2.88%)
Histidine (His, H)
n = 3 (0.86%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 25 18 6 19 22 8 6 7 3 1 2 8 3 4 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 4 11 7 0 1 5 7 1 1 11 11 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 14 1 3 11 9 0 0 3 2 8 2 0 3 17 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 6 0 0 1 10 2 0 4 0 0 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 95 130 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 109 63 144
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 153 134 37
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 28 (6.11%)
Serine (Ser, S)
n = 38 (8.3%)
Threonine (Thr, T)
n = 46 (10.04%)
Cysteine (Cys, C)
n = 2 (0.44%)
Valine (Val, V)
n = 13 (2.84%)
Leucine (Leu, L)
n = 97 (21.18%)
Isoleucine (Ile, I)
n = 35 (7.64%)
Methionine (Met, M)
n = 34 (7.42%)
Proline (Pro, P)
n = 25 (5.46%)
Phenylalanine (Phe, F)
n = 19 (4.15%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 9 (1.97%)
Histidine (His, H)
n = 15 (3.28%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 20 29 10 33 39 6 8 8 1 2 3 8 0 8 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 2 4 13 11 0 3 10 2 2 2 19 2 2 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 17 1 6 17 6 0 1 8 0 13 2 1 2 21 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 8 0 1 2 11 1 0 2 7 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 147 159 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 128 83 198
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 205 166 66
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 5 (5.1%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 9 (9.18%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 3 (3.06%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 8 6 1 5 10 3 5 1 0 1 3 1 0 1 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 2 3 2 1 0 3 1 0 1 1 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 0 1 3 4 0 1 0 0 3 0 0 1 5 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 27 29 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 22 18 50
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 45 35 11
ND5 (size: 1812 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (4.15%)
Alanine (Ala, A)
n = 41 (6.8%)
Serine (Ser, S)
n = 50 (8.29%)
Threonine (Thr, T)
n = 65 (10.78%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 12 (1.99%)
Leucine (Leu, L)
n = 103 (17.08%)
Isoleucine (Ile, I)
n = 56 (9.29%)
Methionine (Met, M)
n = 30 (4.98%)
Proline (Pro, P)
n = 31 (5.14%)
Phenylalanine (Phe, F)
n = 35 (5.8%)
Tyrosine (Tyr, Y)
n = 15 (2.49%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 9 (1.49%)
Glutamic acid (Glu, E)
n = 13 (2.16%)
Asparagine (Asn, N)
n = 35 (5.8%)
Glutamine (Gln, Q)
n = 18 (2.99%)
Histidine (His, H)
n = 17 (2.82%)
Lysine (Lys, K)
n = 21 (3.48%)
Arginine (Arg, R)
n = 10 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 37 24 17 24 51 4 6 15 3 2 5 4 1 10 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 3 3 21 16 1 2 14 8 1 5 17 7 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
37 19 4 6 19 12 1 1 11 1 14 0 1 2 33 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 11 2 2 7 19 2 0 5 4 1 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
100 172 219 113
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
64 175 129 236
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 283 209 83
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.09%)
Alanine (Ala, A)
n = 9 (5.17%)
Serine (Ser, S)
n = 9 (5.17%)
Threonine (Thr, T)
n = 6 (3.45%)
Cysteine (Cys, C)
n = 2 (1.15%)
Valine (Val, V)
n = 30 (17.24%)
Leucine (Leu, L)
n = 23 (13.22%)
Isoleucine (Ile, I)
n = 11 (6.32%)
Methionine (Met, M)
n = 8 (4.6%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 6 (3.45%)
Tyrosine (Tyr, Y)
n = 11 (6.32%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 4 (2.3%)
Glutamic acid (Glu, E)
n = 10 (5.75%)
Asparagine (Asn, N)
n = 4 (2.3%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.15%)
Arginine (Arg, R)
n = 3 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 1 1 2 0 1 2 5 0 0 12 1 7 10 6 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 2 0 2 2 1 4 8 2 2 16 3 0 0 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 0 1 2 1 2 2 1 11 0 4 13 3 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 9 3 1 1 1 0 0 1 2 0 1 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 11 35 48
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 24 31 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
71 11 24 69
Total protein-coding genes (size: 11398 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 210 (5.53%)
Alanine (Ala, A)
n = 264 (6.95%)
Serine (Ser, S)
n = 263 (6.93%)
Threonine (Thr, T)
n = 357 (9.4%)
Cysteine (Cys, C)
n = 20 (0.53%)
Valine (Val, V)
n = 170 (4.48%)
Leucine (Leu, L)
n = 647 (17.04%)
Isoleucine (Ile, I)
n = 317 (8.35%)
Methionine (Met, M)
n = 201 (5.29%)
Proline (Pro, P)
n = 217 (5.72%)
Phenylalanine (Phe, F)
n = 211 (5.56%)
Tyrosine (Tyr, Y)
n = 130 (3.42%)
Tryptophan (Trp, W)
n = 103 (2.71%)
Aspartic acid (Asp, D)
n = 63 (1.66%)
Glutamic acid (Glu, E)
n = 91 (2.4%)
Asparagine (Asn, N)
n = 168 (4.42%)
Glutamine (Gln, Q)
n = 91 (2.4%)
Histidine (His, H)
n = 106 (2.79%)
Lysine (Lys, K)
n = 93 (2.45%)
Arginine (Arg, R)
n = 67 (1.76%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
115 202 157 65 161 279 60 62 74 17 24 55 70 21 74 137
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
44 5 15 38 141 77 8 25 91 59 35 34 109 62 12 48
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
154 135 20 32 97 78 6 5 45 40 90 20 20 33 135 22
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
84 73 18 20 43 82 11 4 28 30 5 1 1 4 3 83
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
798 1046 1188 766
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
452 1051 749 1546
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
301 1587 1326 584 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​y​l​o​b​a​t​e​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ l​a​r​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.