Viewing data for Cololabis saira


Scientific name Cololabis saira
Common name Pacific saury
Maximum lifespan 2.00 years (Cololabis saira@AnAge)

Total mtDNA (size: 16499 bases) GC AT G C A T
Base content (bases) 6681 9818 4246 2435 4799 5019
Base content per 1 kb (bases) 405 595 257 148 291 304
Base content (%) 40.5% 59.5%
Total protein-coding genes (size: 11407 bases) GC AT G C A T
Base content (bases) 4620 6787 3093 1527 3497 3290
Base content per 1 kb (bases) 405 595 271 134 307 288
Base content (%) 40.5% 59.5%
D-loop (size: 859 bases) GC AT G C A T
Base content (bases) 291 568 173 118 288 280
Base content per 1 kb (bases) 339 661 201 137 335 326
Base content (%) 33.9% 66.1%
Total tRNA-coding genes (size: 1544 bases) GC AT G C A T
Base content (bases) 637 907 358 279 405 502
Base content per 1 kb (bases) 413 587 232 181 262 325
Base content (%) 41.3% 58.7%
Total rRNA-coding genes (size: 2619 bases) GC AT G C A T
Base content (bases) 1103 1516 605 498 592 924
Base content per 1 kb (bases) 421 579 231 190 226 353
Base content (%) 42.1% 57.9%
12S rRNA gene (size: 945 bases) GC AT G C A T
Base content (bases) 432 513 235 197 199 314
Base content per 1 kb (bases) 457 543 249 208 211 332
Base content (%) 45.7% 54.3%
16S rRNA gene (size: 1674 bases) GC AT G C A T
Base content (bases) 671 1003 370 301 393 610
Base content per 1 kb (bases) 401 599 221 180 235 364
Base content (%) 40.1% 59.9%

ATP6 (size: 683 bases) GC AT G C A T
Base content (bases) 281 402 204 77 218 184
Base content per 1 kb (bases) 411 589 299 113 319 269
Base content (%) 41.1% 58.9%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 54 114 42 12 51 63
Base content per 1 kb (bases) 321 679 250 71 304 375
Base content (%) 32.1% 67.9%
COX1 (size: 1554 bases) GC AT G C A T
Base content (bases) 614 940 363 251 526 414
Base content per 1 kb (bases) 395 605 234 162 338 266
Base content (%) 39.5% 60.5%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 273 418 169 104 214 204
Base content per 1 kb (bases) 395 605 245 151 310 295
Base content (%) 39.5% 60.5%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 323 462 202 121 251 211
Base content per 1 kb (bases) 411 589 257 154 320 269
Base content (%) 41.1% 58.9%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 478 663 315 163 362 301
Base content per 1 kb (bases) 419 581 276 143 317 264
Base content (%) 41.9% 58.1%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 383 592 251 132 320 272
Base content per 1 kb (bases) 393 607 257 135 328 279
Base content (%) 39.3% 60.7%
ND2 (size: 1046 bases) GC AT G C A T
Base content (bases) 464 582 339 125 273 309
Base content per 1 kb (bases) 444 556 324 120 261 295
Base content (%) 44.4% 55.6%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 140 209 95 45 123 86
Base content per 1 kb (bases) 401 599 272 129 352 246
Base content (%) 40.1% 59.9%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 558 823 391 167 422 401
Base content per 1 kb (bases) 404 596 283 121 306 290
Base content (%) 40.4% 59.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 133 164 92 41 92 72
Base content per 1 kb (bases) 448 552 310 138 310 242
Base content (%) 44.8% 55.2%
ND5 (size: 1836 bases) GC AT G C A T
Base content (bases) 706 1130 481 225 563 567
Base content per 1 kb (bases) 385 615 262 123 307 309
Base content (%) 38.5% 61.5%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 218 304 152 66 88 216
Base content per 1 kb (bases) 418 582 291 126 169 414
Base content (%) 41.8% 58.2%

ATP6 (size: 683 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.42%)
Alanine (Ala, A)
n = 21 (9.29%)
Serine (Ser, S)
n = 10 (4.42%)
Threonine (Thr, T)
n = 22 (9.73%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.98%)
Leucine (Leu, L)
n = 51 (22.57%)
Isoleucine (Ile, I)
n = 20 (8.85%)
Methionine (Met, M)
n = 9 (3.98%)
Proline (Pro, P)
n = 17 (7.52%)
Phenylalanine (Phe, F)
n = 14 (6.19%)
Tyrosine (Tyr, Y)
n = 4 (1.77%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 8 (3.54%)
Glutamine (Gln, Q)
n = 11 (4.87%)
Histidine (His, H)
n = 5 (2.21%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 6 7 20 8 12 1 10 9 2 5 1 3 0 11 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 5 8 8 0 3 3 3 1 4 6 7 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 12 0 1 2 2 0 0 5 2 2 0 0 3 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 4 0 0 1 0 0 0 2 4 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 80 64 38
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 65 33 103
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 59 86 76
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILMFTWLIFLTIIPPKIMAHTFPNEPNTMSTQKPKTESWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 2 (3.64%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 4 (7.27%)
Isoleucine (Ile, I)
n = 5 (9.09%)
Methionine (Met, M)
n = 4 (7.27%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 2 3 1 0 0 0 3 2 0 0 0 0 0 4 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 0 2 0 0 0 0 0 5 1 3 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 0 1 0 0 0 1 0 0 0 0 3 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
5 14 23 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 19 14 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
1 9 26 20
COX1 (size: 1554 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.09%)
Alanine (Ala, A)
n = 45 (8.7%)
Serine (Ser, S)
n = 30 (5.8%)
Threonine (Thr, T)
n = 36 (6.96%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.74%)
Leucine (Leu, L)
n = 61 (11.8%)
Isoleucine (Ile, I)
n = 44 (8.51%)
Methionine (Met, M)
n = 23 (4.45%)
Proline (Pro, P)
n = 28 (5.42%)
Phenylalanine (Phe, F)
n = 42 (8.12%)
Tyrosine (Tyr, Y)
n = 18 (3.48%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 16 (3.09%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
38 6 17 17 6 22 2 14 9 0 17 5 16 2 27 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 20 14 10 1 13 7 24 3 8 10 9 1 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 14 0 7 7 12 0 2 2 13 5 1 0 9 7 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 11 0 7 7 8 0 2 1 4 1 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
157 111 131 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 135 96 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 117 187 197
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.49%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 9 (3.93%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 16 (6.99%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 23 (10.04%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 10 (4.37%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 2 7 11 3 8 0 6 7 1 5 3 8 0 7 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 7 3 7 0 2 2 4 0 4 6 3 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 5 2 4 8 1 0 3 1 3 5 0 0 2 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 15 0 7 6 4 1 1 1 3 1 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 60 57 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 53 64 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 56 83 81
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 4 5 8 8 6 0 13 9 0 9 1 5 0 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 4 7 11 0 6 4 9 2 2 6 4 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 11 1 5 2 6 0 1 2 7 5 0 0 1 0 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 9 0 4 1 2 0 0 1 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 64 50 75
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 68 54 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 70 106 79
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.6%)
Alanine (Ala, A)
n = 31 (8.18%)
Serine (Ser, S)
n = 26 (6.86%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 23 (6.07%)
Leucine (Leu, L)
n = 56 (14.78%)
Isoleucine (Ile, I)
n = 37 (9.76%)
Methionine (Met, M)
n = 8 (2.11%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 31 (8.18%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 20 (5.28%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 12 4 19 7 10 3 17 5 1 4 6 11 2 12 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 7 10 13 1 5 8 9 3 3 10 8 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 8 0 7 9 8 0 0 2 4 9 1 0 8 12 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 0 4 7 9 1 0 0 7 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
95 86 98 101
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 97 77 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 132 126 105
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.25%)
Alanine (Ala, A)
n = 31 (9.57%)
Serine (Ser, S)
n = 25 (7.72%)
Threonine (Thr, T)
n = 24 (7.41%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (4.32%)
Leucine (Leu, L)
n = 65 (20.06%)
Isoleucine (Ile, I)
n = 27 (8.33%)
Methionine (Met, M)
n = 12 (3.7%)
Proline (Pro, P)
n = 22 (6.79%)
Phenylalanine (Phe, F)
n = 19 (5.86%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 9 9 19 5 20 2 17 6 1 4 4 6 0 19 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 11 9 9 2 3 2 11 1 8 9 5 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 14 1 8 4 8 0 1 4 4 7 1 2 3 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 10 1 3 1 7 0 0 1 4 3 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 85 85 78
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 97 53 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 69 134 105
ND2 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 35 (10.09%)
Serine (Ser, S)
n = 21 (6.05%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 72 (20.75%)
Isoleucine (Ile, I)
n = 27 (7.78%)
Methionine (Met, M)
n = 15 (4.32%)
Proline (Pro, P)
n = 24 (6.92%)
Phenylalanine (Phe, F)
n = 10 (2.88%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 10 (2.88%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 9 (2.59%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 8 11 16 15 24 3 13 13 1 4 2 2 0 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 6 18 11 0 0 6 10 2 5 7 11 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 20 3 6 6 6 1 0 2 0 7 1 1 4 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 1 1 2 7 2 1 0 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 109 108 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 123 56 132
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 107 144 77
ND3 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 35 (10.09%)
Serine (Ser, S)
n = 21 (6.05%)
Threonine (Thr, T)
n = 45 (12.97%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 72 (20.75%)
Isoleucine (Ile, I)
n = 27 (7.78%)
Methionine (Met, M)
n = 15 (4.32%)
Proline (Pro, P)
n = 24 (6.92%)
Phenylalanine (Phe, F)
n = 10 (2.88%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 10 (2.88%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 9 (2.59%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 8 11 16 15 24 3 13 13 1 4 2 2 0 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 6 18 11 0 0 6 10 2 5 7 11 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 20 3 6 6 6 1 0 2 0 7 1 1 4 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 1 1 2 7 2 1 0 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 109 108 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 123 56 132
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 107 144 77
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (4.58%)
Alanine (Ala, A)
n = 30 (6.54%)
Serine (Ser, S)
n = 31 (6.75%)
Threonine (Thr, T)
n = 42 (9.15%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 14 (3.05%)
Leucine (Leu, L)
n = 103 (22.44%)
Isoleucine (Ile, I)
n = 36 (7.84%)
Methionine (Met, M)
n = 27 (5.88%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 18 (3.92%)
Tyrosine (Tyr, Y)
n = 13 (2.83%)
Tryptophan (Trp, W)
n = 17 (3.7%)
Aspartic acid (Asp, D)
n = 3 (0.65%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 15 (3.27%)
Glutamine (Gln, Q)
n = 13 (2.83%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 6 20 38 16 29 3 17 10 3 4 1 8 1 10 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 4 4 14 12 0 5 2 11 3 5 12 9 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 14 0 2 9 9 0 0 11 11 2 1 0 7 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 3 1 2 10 1 1 2 8 0 0 0 0 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 149 142 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
65 119 78 198
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 123 181 133
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 12 (12.24%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 4 3 4 7 2 6 2 0 1 0 1 0 4 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 3 5 4 0 3 2 0 0 2 0 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 2 0 1 3 5 0 0 2 0 0 1 1 0 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 0 0 2 1 0 0 0 2 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
23 28 19 29
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 31 15 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 33 38 23
ND5 (size: 1836 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.91%)
Alanine (Ala, A)
n = 52 (8.51%)
Serine (Ser, S)
n = 46 (7.53%)
Threonine (Thr, T)
n = 58 (9.49%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 23 (3.76%)
Leucine (Leu, L)
n = 90 (14.73%)
Isoleucine (Ile, I)
n = 59 (9.66%)
Methionine (Met, M)
n = 29 (4.75%)
Proline (Pro, P)
n = 29 (4.75%)
Phenylalanine (Phe, F)
n = 40 (6.55%)
Tyrosine (Tyr, Y)
n = 15 (2.45%)
Tryptophan (Trp, W)
n = 13 (2.13%)
Aspartic acid (Asp, D)
n = 15 (2.45%)
Glutamic acid (Glu, E)
n = 13 (2.13%)
Asparagine (Asn, N)
n = 32 (5.24%)
Glutamine (Gln, Q)
n = 18 (2.95%)
Histidine (His, H)
n = 12 (1.96%)
Lysine (Lys, K)
n = 21 (3.44%)
Arginine (Arg, R)
n = 10 (1.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
46 13 23 22 13 32 3 20 17 1 13 2 7 1 25 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 4 2 11 21 19 1 4 5 19 2 13 10 5 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 31 1 13 14 7 1 4 7 8 7 0 0 12 20 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 11 2 6 9 20 1 2 1 5 2 0 0 1 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
133 139 210 130
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
70 174 127 241
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 168 230 192
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.03%)
Alanine (Ala, A)
n = 16 (9.25%)
Serine (Ser, S)
n = 16 (9.25%)
Threonine (Thr, T)
n = 3 (1.73%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 23 (13.29%)
Leucine (Leu, L)
n = 33 (19.08%)
Isoleucine (Ile, I)
n = 4 (2.31%)
Methionine (Met, M)
n = 8 (4.62%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 11 (6.36%)
Tyrosine (Tyr, Y)
n = 10 (5.78%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 4 7 1 4 2 14 0 0 11 1 6 5 9 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 8 1 4 3 12 1 5 8 2 1 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 5 2 3 1 4 1 10 0 3 5 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 4 2 0 0 0 1 0 1 2 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 22 21 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 34 20 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 10 47 79
Total protein-coding genes (size: 11428 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 234 (6.15%)
Alanine (Ala, A)
n = 321 (8.44%)
Serine (Ser, S)
n = 260 (6.83%)
Threonine (Thr, T)
n = 299 (7.86%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 193 (5.07%)
Leucine (Leu, L)
n = 647 (17.0%)
Isoleucine (Ile, I)
n = 308 (8.09%)
Methionine (Met, M)
n = 164 (4.31%)
Proline (Pro, P)
n = 219 (5.76%)
Phenylalanine (Phe, F)
n = 238 (6.25%)
Tyrosine (Tyr, Y)
n = 114 (3.0%)
Tryptophan (Trp, W)
n = 117 (3.07%)
Aspartic acid (Asp, D)
n = 77 (2.02%)
Glutamic acid (Glu, E)
n = 99 (2.6%)
Asparagine (Asn, N)
n = 126 (3.31%)
Glutamine (Gln, Q)
n = 102 (2.68%)
Histidine (His, H)
n = 104 (2.73%)
Lysine (Lys, K)
n = 78 (2.05%)
Arginine (Arg, R)
n = 74 (1.94%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
236 72 118 191 94 176 21 156 92 10 80 26 76 11 150 88
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
46 8 18 89 112 112 8 56 42 110 26 63 82 69 5 62
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
93 135 9 60 72 69 4 15 40 64 50 9 9 53 73 31
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
73 88 11 37 40 72 6 8 10 46 10 0 0 6 0 108
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
924 981 1030 871
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
506 1044 706 1550
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
185 985 1433 1203 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​o​l​o​l​a​b​i​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ s​a​i​r​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.