Viewing data for Corvus hawaiiensis


Scientific name Corvus hawaiiensis
Common name Hawaiian crow
Maximum lifespan 25.00 years (Corvus hawaiiensis@AnAge)

Total mtDNA (size: 16898 bases) GC AT G C A T
Base content (bases) 7498 9400 4994 2504 4189 5211
Base content per 1 kb (bases) 444 556 296 148 248 308
Base content (%) 44.4% 55.6%
Total protein-coding genes (size: 11382 bases) GC AT G C A T
Base content (bases) 5136 6246 3624 1512 2817 3429
Base content per 1 kb (bases) 451 549 318 133 247 301
Base content (%) 45.1% 54.9%
D-loop (size: 1314 bases) GC AT G C A T
Base content (bases) 536 778 354 182 392 386
Base content per 1 kb (bases) 408 592 269 139 298 294
Base content (%) 40.8% 59.2%
Total tRNA-coding genes (size: 1544 bases) GC AT G C A T
Base content (bases) 625 919 360 265 398 521
Base content per 1 kb (bases) 405 595 233 172 258 337
Base content (%) 40.5% 59.5%
Total rRNA-coding genes (size: 2576 bases) GC AT G C A T
Base content (bases) 1171 1405 627 544 566 839
Base content per 1 kb (bases) 455 545 243 211 220 326
Base content (%) 45.5% 54.5%
12S rRNA gene (size: 977 bases) GC AT G C A T
Base content (bases) 472 505 257 215 209 296
Base content per 1 kb (bases) 483 517 263 220 214 303
Base content (%) 48.3% 51.7%
16S rRNA gene (size: 1599 bases) GC AT G C A T
Base content (bases) 699 900 370 329 357 543
Base content per 1 kb (bases) 437 563 231 206 223 340
Base content (%) 43.7% 56.3%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 306 378 232 74 168 210
Base content per 1 kb (bases) 447 553 339 108 246 307
Base content (%) 44.7% 55.3%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 71 97 61 10 42 55
Base content per 1 kb (bases) 423 577 363 60 250 327
Base content (%) 42.3% 57.7%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 706 845 449 257 398 447
Base content per 1 kb (bases) 455 545 289 166 257 288
Base content (%) 45.5% 54.5%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 315 369 203 112 163 206
Base content per 1 kb (bases) 461 539 297 164 238 301
Base content (%) 46.1% 53.9%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 370 414 246 124 199 215
Base content per 1 kb (bases) 472 528 314 158 254 274
Base content (%) 47.2% 52.8%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 518 625 369 149 286 339
Base content per 1 kb (bases) 453 547 323 130 250 297
Base content (%) 45.3% 54.7%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 442 536 302 140 263 273
Base content per 1 kb (bases) 452 548 309 143 269 279
Base content (%) 45.2% 54.8%
ND2 (size: 1041 bases) GC AT G C A T
Base content (bases) 464 577 348 116 271 306
Base content per 1 kb (bases) 446 554 334 111 260 294
Base content (%) 44.6% 55.4%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 145 206 93 52 102 104
Base content per 1 kb (bases) 413 587 265 148 291 296
Base content (%) 41.3% 58.7%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 617 761 456 161 326 435
Base content per 1 kb (bases) 448 552 331 117 237 316
Base content (%) 44.8% 55.2%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 144 153 107 37 73 80
Base content per 1 kb (bases) 485 515 360 125 246 269
Base content (%) 48.5% 51.5%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 805 1013 588 217 442 571
Base content per 1 kb (bases) 443 557 323 119 243 314
Base content (%) 44.3% 55.7%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 238 284 173 65 88 196
Base content per 1 kb (bases) 456 544 331 125 169 375
Base content (%) 45.6% 54.4%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 15 (6.61%)
Threonine (Thr, T)
n = 25 (11.01%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.96%)
Leucine (Leu, L)
n = 61 (26.87%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 13 6 7 7 38 5 4 8 1 2 3 4 0 2 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 2 10 4 0 3 4 1 1 3 4 7 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 14 1 3 1 6 0 0 5 0 3 0 0 0 10 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 1 0 3 0 1 2 2 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
39 89 70 30
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 66 34 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 77 106 33
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPNPWFFIMLTSWLTYSMIIQPKLLSFISMNPPLSKTQTTLTTSPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 6 (10.91%)
Threonine (Thr, T)
n = 9 (16.36%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 4 (7.27%)
Proline (Pro, P)
n = 8 (14.55%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 3 (5.45%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 3 2 0 2 4 1 0 3 0 0 0 0 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 0 0 0 0 0 0 0 1 3 4 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 1 0 0 4 0 1 1 0 0 1 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
0 18 23 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 22 10 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 21 22 9
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 46 (8.91%)
Serine (Ser, S)
n = 28 (5.43%)
Threonine (Thr, T)
n = 38 (7.36%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 36 (6.98%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 41 (7.95%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 30 (5.81%)
Phenylalanine (Phe, F)
n = 44 (8.53%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 16 (3.1%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 26 14 6 7 45 4 0 9 0 5 6 20 5 10 34
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 1 13 16 16 1 6 8 28 5 4 3 23 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 15 0 5 10 10 0 0 3 3 14 0 0 3 13 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 9 1 2 13 9 0 2 0 6 0 0 1 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
154 128 131 104
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 139 95 206
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 182 221 88
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 19 (8.37%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 17 (7.49%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 17 (7.49%)
Leucine (Leu, L)
n = 30 (13.22%)
Isoleucine (Ile, I)
n = 12 (5.29%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 12 (5.29%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 7 (3.08%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 14 (6.17%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 9 8 3 4 21 1 1 5 1 3 5 7 2 3 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 7 7 5 0 1 3 2 2 3 1 8 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 6 0 3 5 6 1 0 4 2 5 0 0 2 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 11 3 3 11 3 1 1 0 5 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 61 53 42
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 63 59 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 79 94 41
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 15 (5.77%)
Threonine (Thr, T)
n = 23 (8.85%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 14 (5.38%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 5 (1.92%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 12 5 4 7 20 0 0 5 2 4 4 8 0 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 6 8 8 0 3 7 6 4 2 4 8 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 11 0 3 4 4 0 0 4 3 8 0 0 0 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 5 2 1 4 5 0 1 1 3 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 74 59 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 70 56 93
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 102 100 47
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 27 (7.11%)
Serine (Ser, S)
n = 23 (6.05%)
Threonine (Thr, T)
n = 25 (6.58%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 19 (5.0%)
Leucine (Leu, L)
n = 63 (16.58%)
Isoleucine (Ile, I)
n = 37 (9.74%)
Methionine (Met, M)
n = 7 (1.84%)
Proline (Pro, P)
n = 25 (6.58%)
Phenylalanine (Phe, F)
n = 30 (7.89%)
Tyrosine (Tyr, Y)
n = 12 (3.16%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 19 (5.0%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 11 (2.89%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 26 5 4 10 43 3 3 8 0 1 6 9 3 3 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 3 4 12 10 1 1 8 14 1 7 4 10 4 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 12 1 3 8 10 0 1 1 2 10 0 0 4 15 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 0 0 9 11 0 1 0 7 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
85 113 101 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 98 78 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 158 160 48
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.31%)
Alanine (Ala, A)
n = 30 (9.23%)
Serine (Ser, S)
n = 25 (7.69%)
Threonine (Thr, T)
n = 16 (4.92%)
Cysteine (Cys, C)
n = 2 (0.62%)
Valine (Val, V)
n = 18 (5.54%)
Leucine (Leu, L)
n = 60 (18.46%)
Isoleucine (Ile, I)
n = 27 (8.31%)
Methionine (Met, M)
n = 14 (4.31%)
Proline (Pro, P)
n = 26 (8.0%)
Phenylalanine (Phe, F)
n = 19 (5.85%)
Tyrosine (Tyr, Y)
n = 15 (4.62%)
Tryptophan (Trp, W)
n = 8 (2.46%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.38%)
Asparagine (Asn, N)
n = 13 (4.0%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 7 (2.15%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 18 9 9 7 34 5 5 5 1 3 5 9 1 5 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 3 14 13 0 1 3 4 6 7 5 14 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 7 0 4 9 6 0 1 5 6 9 1 0 4 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 8 3 1 3 7 0 1 3 3 1 0 1 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 97 84 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 91 58 138
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 114 131 57
ND2 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 28 (8.09%)
Serine (Ser, S)
n = 31 (8.96%)
Threonine (Thr, T)
n = 42 (12.14%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 10 (2.89%)
Leucine (Leu, L)
n = 66 (19.08%)
Isoleucine (Ile, I)
n = 32 (9.25%)
Methionine (Met, M)
n = 18 (5.2%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 12 (3.47%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 9 (2.6%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 15 8 11 17 29 6 3 6 4 2 4 3 1 2 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 1 0 3 13 11 1 1 6 3 2 6 5 10 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 15 1 4 12 10 0 1 4 5 4 0 0 3 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 2 2 0 2 11 2 1 0 2 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 106 122 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 117 60 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 125 124 69
ND3 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 28 (8.09%)
Serine (Ser, S)
n = 31 (8.96%)
Threonine (Thr, T)
n = 42 (12.14%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 10 (2.89%)
Leucine (Leu, L)
n = 66 (19.08%)
Isoleucine (Ile, I)
n = 32 (9.25%)
Methionine (Met, M)
n = 18 (5.2%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 12 (3.47%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 9 (2.6%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 15 8 11 17 29 6 3 6 4 2 4 3 1 2 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 1 0 3 13 11 1 1 6 3 2 6 5 10 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 15 1 4 12 10 0 1 4 5 4 0 0 3 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 2 2 0 2 11 2 1 0 2 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 106 122 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 117 60 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 125 124 69
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 32 (6.99%)
Serine (Ser, S)
n = 35 (7.64%)
Threonine (Thr, T)
n = 44 (9.61%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 19 (4.15%)
Leucine (Leu, L)
n = 92 (20.09%)
Isoleucine (Ile, I)
n = 42 (9.17%)
Methionine (Met, M)
n = 27 (5.9%)
Proline (Pro, P)
n = 28 (6.11%)
Phenylalanine (Phe, F)
n = 14 (3.06%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 16 (3.49%)
Glutamine (Gln, Q)
n = 13 (2.84%)
Histidine (His, H)
n = 16 (3.49%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 27 23 9 16 49 13 5 11 2 2 6 11 0 2 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 3 2 16 13 1 1 7 8 2 4 8 16 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 18 1 4 10 11 1 0 9 3 10 0 0 4 12 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 9 1 0 3 10 0 1 0 10 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 155 148 74
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 130 81 194
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 171 206 57
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 3 (3.06%)
Alanine (Ala, A)
n = 12 (12.24%)
Serine (Ser, S)
n = 13 (13.27%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 4 (4.08%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 5 1 1 17 2 1 3 1 1 0 0 0 2 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 0 8 4 0 1 2 0 0 1 0 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 4 0 4 4 0 1 0 4 0 1 0 0 0 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 0 0 1 0 0 0 1 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 34 24 22
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 32 16 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 41 40 13
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.45%)
Alanine (Ala, A)
n = 48 (7.93%)
Serine (Ser, S)
n = 52 (8.6%)
Threonine (Thr, T)
n = 59 (9.75%)
Cysteine (Cys, C)
n = 7 (1.16%)
Valine (Val, V)
n = 22 (3.64%)
Leucine (Leu, L)
n = 100 (16.53%)
Isoleucine (Ile, I)
n = 54 (8.93%)
Methionine (Met, M)
n = 31 (5.12%)
Proline (Pro, P)
n = 30 (4.96%)
Phenylalanine (Phe, F)
n = 38 (6.28%)
Tyrosine (Tyr, Y)
n = 13 (2.15%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 10 (1.65%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 24 (3.97%)
Glutamine (Gln, Q)
n = 19 (3.14%)
Histidine (His, H)
n = 13 (2.15%)
Lysine (Lys, K)
n = 20 (3.31%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 38 29 4 17 67 6 6 18 1 2 11 9 0 9 29
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 5 7 25 15 1 0 14 16 3 7 7 14 2 16
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 21 0 6 16 17 1 1 11 2 11 0 0 6 18 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 3 2 8 20 0 1 1 7 0 1 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
124 165 201 116
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
74 177 110 245
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 246 260 81
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (15.61%)
Alanine (Ala, A)
n = 11 (6.36%)
Serine (Ser, S)
n = 17 (9.83%)
Threonine (Thr, T)
n = 4 (2.31%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 33 (19.08%)
Leucine (Leu, L)
n = 23 (13.29%)
Isoleucine (Ile, I)
n = 6 (3.47%)
Methionine (Met, M)
n = 9 (5.2%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 9 (5.2%)
Tyrosine (Tyr, Y)
n = 7 (4.05%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 4 (2.31%)
Glutamic acid (Glu, E)
n = 3 (1.73%)
Asparagine (Asn, N)
n = 4 (2.31%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 0 3 2 0 5 8 8 0 0 17 0 5 11 8 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 1 2 0 3 6 7 1 7 12 4 0 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 2 9 0 1 4 2 1 6 1 0 0 3 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 0 2 2 0 0 0 0 1 4 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 24 26 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 33 19 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
53 8 43 70
Total protein-coding genes (size: 11399 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 220 (5.79%)
Alanine (Ala, A)
n = 299 (7.87%)
Serine (Ser, S)
n = 288 (7.58%)
Threonine (Thr, T)
n = 318 (8.37%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 202 (5.32%)
Leucine (Leu, L)
n = 644 (16.96%)
Isoleucine (Ile, I)
n = 299 (7.87%)
Methionine (Met, M)
n = 174 (4.58%)
Proline (Pro, P)
n = 222 (5.85%)
Phenylalanine (Phe, F)
n = 225 (5.92%)
Tyrosine (Tyr, Y)
n = 111 (2.92%)
Tryptophan (Trp, W)
n = 107 (2.82%)
Aspartic acid (Asp, D)
n = 71 (1.87%)
Glutamic acid (Glu, E)
n = 88 (2.32%)
Asparagine (Asn, N)
n = 132 (3.48%)
Glutamine (Gln, Q)
n = 98 (2.58%)
Histidine (His, H)
n = 104 (2.74%)
Lysine (Lys, K)
n = 85 (2.24%)
Arginine (Arg, R)
n = 72 (1.9%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
106 193 121 61 98 386 59 40 85 13 42 50 87 23 62 163
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
53 9 20 50 132 105 12 25 64 92 39 50 44 121 7 71
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
114 127 6 50 86 83 10 8 51 33 78 3 0 32 100 13
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
91 72 16 12 59 82 3 10 8 48 6 1 2 8 0 104
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
880 1100 1070 749
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
490 1068 697 1544
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
252 1351 1562 634 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​o​r​v​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ h​a​w​a​i​i​e​n​s​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.