Viewing data for Naja atra


Scientific name Naja atra
Common name Indian/golden spitting cobra
Maximum lifespan 11.70 years (Naja atra@AnAge)

Total mtDNA (size: 17216 bases) GC AT G C A T
Base content (bases) 7165 10051 4887 2278 4365 5686
Base content per 1 kb (bases) 416 584 284 132 254 330
Base content (%) 41.6% 58.4%
Total protein-coding genes (size: 11259 bases) GC AT G C A T
Base content (bases) 4677 6582 3314 1363 2816 3766
Base content per 1 kb (bases) 415 585 294 121 250 334
Base content (%) 41.5% 58.5%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1434 bases) GC AT G C A T
Base content (bases) 625 809 369 256 350 459
Base content per 1 kb (bases) 436 564 257 179 244 320
Base content (%) 43.6% 56.4%
Total rRNA-coding genes (size: 2427 bases) GC AT G C A T
Base content (bases) 1032 1395 621 411 491 904
Base content per 1 kb (bases) 425 575 256 169 202 372
Base content (%) 42.5% 57.5%
12S rRNA gene (size: 933 bases) GC AT G C A T
Base content (bases) 402 531 236 166 186 345
Base content per 1 kb (bases) 431 569 253 178 199 370
Base content (%) 43.1% 56.9%
16S rRNA gene (size: 1494 bases) GC AT G C A T
Base content (bases) 630 864 385 245 305 559
Base content per 1 kb (bases) 422 578 258 164 204 374
Base content (%) 42.2% 57.8%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 270 411 200 70 183 228
Base content per 1 kb (bases) 396 604 294 103 269 335
Base content (%) 39.6% 60.4%
ATP8 (size: 165 bases) GC AT G C A T
Base content (bases) 67 98 49 18 31 67
Base content per 1 kb (bases) 406 594 297 109 188 406
Base content (%) 40.6% 59.4%
COX1 (size: 1602 bases) GC AT G C A T
Base content (bases) 724 878 457 267 429 449
Base content per 1 kb (bases) 452 548 285 167 268 280
Base content (%) 45.2% 54.8%
COX2 (size: 685 bases) GC AT G C A T
Base content (bases) 307 378 198 109 148 230
Base content per 1 kb (bases) 448 552 289 159 216 336
Base content (%) 44.8% 55.2%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 353 431 225 128 206 225
Base content per 1 kb (bases) 450 550 287 163 263 287
Base content (%) 45.0% 55.0%
CYTB (size: 1117 bases) GC AT G C A T
Base content (bases) 458 659 332 126 319 340
Base content per 1 kb (bases) 410 590 297 113 286 304
Base content (%) 41.0% 59.0%
ND1 (size: 964 bases) GC AT G C A T
Base content (bases) 401 563 286 115 250 313
Base content per 1 kb (bases) 416 584 297 119 259 325
Base content (%) 41.6% 58.4%
ND2 (size: 1030 bases) GC AT G C A T
Base content (bases) 398 632 306 92 244 388
Base content per 1 kb (bases) 386 614 297 89 237 377
Base content (%) 38.6% 61.4%
ND3 (size: 343 bases) GC AT G C A T
Base content (bases) 144 199 107 37 83 116
Base content per 1 kb (bases) 420 580 312 108 242 338
Base content (%) 42.0% 58.0%
ND4 (size: 1337 bases) GC AT G C A T
Base content (bases) 551 786 417 134 327 459
Base content per 1 kb (bases) 412 588 312 100 245 343
Base content (%) 41.2% 58.8%
ND4L (size: 291 bases) GC AT G C A T
Base content (bases) 110 181 76 34 84 97
Base content per 1 kb (bases) 378 622 261 117 289 333
Base content (%) 37.8% 62.2%
ND5 (size: 1773 bases) GC AT G C A T
Base content (bases) 695 1078 507 188 437 641
Base content per 1 kb (bases) 392 608 286 106 246 362
Base content (%) 39.2% 60.8%
ND6 (size: 504 bases) GC AT G C A T
Base content (bases) 203 301 157 46 78 223
Base content per 1 kb (bases) 403 597 312 91 155 442
Base content (%) 40.3% 59.7%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.1%)
Alanine (Ala, A)
n = 14 (6.19%)
Serine (Ser, S)
n = 13 (5.75%)
Threonine (Thr, T)
n = 25 (11.06%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 9 (3.98%)
Leucine (Leu, L)
n = 48 (21.24%)
Isoleucine (Ile, I)
n = 26 (11.5%)
Methionine (Met, M)
n = 15 (6.64%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 8 (3.54%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (2.21%)
Asparagine (Asn, N)
n = 13 (5.75%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 5 (2.21%)
Lysine (Lys, K)
n = 6 (2.65%)
Arginine (Arg, R)
n = 3 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 12 10 6 7 24 3 8 7 1 3 1 4 1 4 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 2 7 5 0 1 3 2 1 2 4 6 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 13 0 0 2 6 1 0 4 2 1 0 0 3 10 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 1 0 0 5 1 2 0 0 1 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
35 69 89 34
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
19 61 41 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 70 98 43
ATP8 (size: 165 bases)
Amino acid sequence: MPQLSTAHIFLIHLWAWLVLCLIVQKTKTVSMNKTPTHTLLTKPQKPAPTLPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.56%)
Serine (Ser, S)
n = 2 (3.7%)
Threonine (Thr, T)
n = 9 (16.67%)
Cysteine (Cys, C)
n = 1 (1.85%)
Valine (Val, V)
n = 3 (5.56%)
Leucine (Leu, L)
n = 9 (16.67%)
Isoleucine (Ile, I)
n = 3 (5.56%)
Methionine (Met, M)
n = 2 (3.7%)
Proline (Pro, P)
n = 6 (11.11%)
Phenylalanine (Phe, F)
n = 1 (1.85%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 3 (5.56%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 1 (1.85%)
Glutamine (Gln, Q)
n = 3 (5.56%)
Histidine (His, H)
n = 3 (5.56%)
Lysine (Lys, K)
n = 5 (9.26%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 1 1 1 0 4 2 2 2 1 0 0 1 2 0 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 0 2 1 0 0 0 0 0 0 0 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 6 1 0 0 1 0 0 1 0 0 0 0 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 0 0 0 0 5 0 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 19 21 9
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 19 13 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 11 33 4
COX1 (size: 1602 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 45 (8.44%)
Alanine (Ala, A)
n = 37 (6.94%)
Serine (Ser, S)
n = 37 (6.94%)
Threonine (Thr, T)
n = 42 (7.88%)
Cysteine (Cys, C)
n = 4 (0.75%)
Valine (Val, V)
n = 30 (5.63%)
Leucine (Leu, L)
n = 61 (11.44%)
Isoleucine (Ile, I)
n = 44 (8.26%)
Methionine (Met, M)
n = 32 (6.0%)
Proline (Pro, P)
n = 32 (6.0%)
Phenylalanine (Phe, F)
n = 45 (8.44%)
Tyrosine (Tyr, Y)
n = 19 (3.56%)
Tryptophan (Trp, W)
n = 19 (3.56%)
Aspartic acid (Asp, D)
n = 13 (2.44%)
Glutamic acid (Glu, E)
n = 10 (1.88%)
Asparagine (Asn, N)
n = 18 (3.38%)
Glutamine (Gln, Q)
n = 8 (1.5%)
Histidine (His, H)
n = 16 (3.0%)
Lysine (Lys, K)
n = 12 (2.25%)
Arginine (Arg, R)
n = 9 (1.69%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 26 25 10 8 28 7 7 5 3 4 5 19 2 18 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 4 2 19 15 1 7 11 21 6 3 10 16 3 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 18 2 4 13 10 4 2 4 5 14 5 1 2 16 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 4 6 3 10 11 1 2 3 4 0 1 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
135 118 155 126
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
84 142 96 212
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
48 197 198 91
COX2 (size: 685 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 17 (7.49%)
Serine (Ser, S)
n = 17 (7.49%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 18 (7.93%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 12 (5.29%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 7 (3.08%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 9 (3.96%)
Glutamic acid (Glu, E)
n = 16 (7.05%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 11 (4.85%)
Histidine (His, H)
n = 7 (3.08%)
Lysine (Lys, K)
n = 2 (0.88%)
Arginine (Arg, R)
n = 7 (3.08%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 8 7 0 6 18 1 6 9 2 2 1 12 3 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 5 4 8 0 1 2 5 0 0 5 7 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 13 0 2 2 9 1 1 2 1 6 1 0 1 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 14 2 2 7 1 1 0 2 4 1 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 63 54 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 65 59 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 70 117 26
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 26 (10.0%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 20 (7.69%)
Leucine (Leu, L)
n = 36 (13.85%)
Isoleucine (Ile, I)
n = 13 (5.0%)
Methionine (Met, M)
n = 13 (5.0%)
Proline (Pro, P)
n = 11 (4.23%)
Phenylalanine (Phe, F)
n = 17 (6.54%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 8 12 6 7 15 1 5 7 0 2 6 7 5 5 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 1 8 4 0 3 5 8 3 1 2 7 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 8 1 3 4 5 2 0 4 6 6 2 2 1 4 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 8 2 1 3 4 0 0 1 3 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 67 65 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 64 57 99
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 94 103 43
CYTB (size: 1117 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (4.85%)
Alanine (Ala, A)
n = 19 (5.12%)
Serine (Ser, S)
n = 32 (8.63%)
Threonine (Thr, T)
n = 38 (10.24%)
Cysteine (Cys, C)
n = 2 (0.54%)
Valine (Val, V)
n = 13 (3.5%)
Leucine (Leu, L)
n = 55 (14.82%)
Isoleucine (Ile, I)
n = 39 (10.51%)
Methionine (Met, M)
n = 15 (4.04%)
Proline (Pro, P)
n = 21 (5.66%)
Phenylalanine (Phe, F)
n = 28 (7.55%)
Tyrosine (Tyr, Y)
n = 13 (3.5%)
Tryptophan (Trp, W)
n = 12 (3.23%)
Aspartic acid (Asp, D)
n = 6 (1.62%)
Glutamic acid (Glu, E)
n = 6 (1.62%)
Asparagine (Asn, N)
n = 21 (5.66%)
Glutamine (Gln, Q)
n = 7 (1.89%)
Histidine (His, H)
n = 13 (3.5%)
Lysine (Lys, K)
n = 8 (2.16%)
Arginine (Arg, R)
n = 6 (1.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 27 11 9 8 24 6 8 6 1 5 3 3 2 8 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 2 8 9 0 2 4 10 2 4 3 13 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 19 1 8 7 11 3 1 2 4 9 0 0 7 14 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 2 2 4 8 0 0 1 4 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
62 94 124 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 107 74 150
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 131 142 76
ND1 (size: 964 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (5.0%)
Alanine (Ala, A)
n = 18 (5.63%)
Serine (Ser, S)
n = 25 (7.81%)
Threonine (Thr, T)
n = 29 (9.06%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 7 (2.19%)
Leucine (Leu, L)
n = 59 (18.44%)
Isoleucine (Ile, I)
n = 25 (7.81%)
Methionine (Met, M)
n = 27 (8.44%)
Proline (Pro, P)
n = 26 (8.13%)
Phenylalanine (Phe, F)
n = 15 (4.69%)
Tyrosine (Tyr, Y)
n = 10 (3.13%)
Tryptophan (Trp, W)
n = 8 (2.5%)
Aspartic acid (Asp, D)
n = 4 (1.25%)
Glutamic acid (Glu, E)
n = 12 (3.75%)
Asparagine (Asn, N)
n = 14 (4.38%)
Glutamine (Gln, Q)
n = 8 (2.5%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 8 (2.5%)
Arginine (Arg, R)
n = 7 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 18 20 7 7 31 3 11 6 2 3 1 3 0 6 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 1 2 8 7 1 1 2 10 3 3 6 15 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 13 1 3 11 10 1 0 0 3 7 1 0 4 10 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 8 4 1 3 8 0 1 2 3 1 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 91 103 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 98 58 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 97 152 46
ND2 (size: 1030 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (2.63%)
Alanine (Ala, A)
n = 22 (6.43%)
Serine (Ser, S)
n = 24 (7.02%)
Threonine (Thr, T)
n = 67 (19.59%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.51%)
Leucine (Leu, L)
n = 44 (12.87%)
Isoleucine (Ile, I)
n = 28 (8.19%)
Methionine (Met, M)
n = 38 (11.11%)
Proline (Pro, P)
n = 20 (5.85%)
Phenylalanine (Phe, F)
n = 9 (2.63%)
Tyrosine (Tyr, Y)
n = 6 (1.75%)
Tryptophan (Trp, W)
n = 9 (2.63%)
Aspartic acid (Asp, D)
n = 3 (0.88%)
Glutamic acid (Glu, E)
n = 5 (1.46%)
Asparagine (Asn, N)
n = 12 (3.51%)
Glutamine (Gln, Q)
n = 6 (1.75%)
Histidine (His, H)
n = 11 (3.22%)
Lysine (Lys, K)
n = 13 (3.8%)
Arginine (Arg, R)
n = 4 (1.17%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 12 35 9 2 25 2 6 5 1 2 6 4 0 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 4 9 8 1 0 5 3 1 1 5 14 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 33 3 8 2 10 0 0 4 1 5 1 0 5 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 5 0 1 2 12 1 1 0 2 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 79 162 51
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 129 56 131
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 98 170 61
ND3 (size: 1030 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (2.63%)
Alanine (Ala, A)
n = 22 (6.43%)
Serine (Ser, S)
n = 24 (7.02%)
Threonine (Thr, T)
n = 67 (19.59%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.51%)
Leucine (Leu, L)
n = 44 (12.87%)
Isoleucine (Ile, I)
n = 28 (8.19%)
Methionine (Met, M)
n = 38 (11.11%)
Proline (Pro, P)
n = 20 (5.85%)
Phenylalanine (Phe, F)
n = 9 (2.63%)
Tyrosine (Tyr, Y)
n = 6 (1.75%)
Tryptophan (Trp, W)
n = 9 (2.63%)
Aspartic acid (Asp, D)
n = 3 (0.88%)
Glutamic acid (Glu, E)
n = 5 (1.46%)
Asparagine (Asn, N)
n = 12 (3.51%)
Glutamine (Gln, Q)
n = 6 (1.75%)
Histidine (His, H)
n = 11 (3.22%)
Lysine (Lys, K)
n = 13 (3.8%)
Arginine (Arg, R)
n = 4 (1.17%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 12 35 9 2 25 2 6 5 1 2 6 4 0 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 4 9 8 1 0 5 3 1 1 5 14 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 33 3 8 2 10 0 0 4 1 5 1 0 5 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 5 0 1 2 12 1 1 0 2 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 79 162 51
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 129 56 131
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 98 170 61
ND4 (size: 1337 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (2.93%)
Alanine (Ala, A)
n = 36 (8.11%)
Serine (Ser, S)
n = 35 (7.88%)
Threonine (Thr, T)
n = 60 (13.51%)
Cysteine (Cys, C)
n = 4 (0.9%)
Valine (Val, V)
n = 8 (1.8%)
Leucine (Leu, L)
n = 82 (18.47%)
Isoleucine (Ile, I)
n = 36 (8.11%)
Methionine (Met, M)
n = 30 (6.76%)
Proline (Pro, P)
n = 24 (5.41%)
Phenylalanine (Phe, F)
n = 19 (4.28%)
Tyrosine (Tyr, Y)
n = 13 (2.93%)
Tryptophan (Trp, W)
n = 10 (2.25%)
Aspartic acid (Asp, D)
n = 3 (0.68%)
Glutamic acid (Glu, E)
n = 9 (2.03%)
Asparagine (Asn, N)
n = 15 (3.38%)
Glutamine (Gln, Q)
n = 16 (3.6%)
Histidine (His, H)
n = 11 (2.48%)
Lysine (Lys, K)
n = 12 (2.7%)
Arginine (Arg, R)
n = 9 (2.03%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 23 25 9 8 51 3 7 14 2 3 1 4 0 9 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 2 7 13 16 0 2 5 4 2 2 5 17 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 32 0 4 9 13 1 1 7 1 12 2 4 3 12 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 9 0 1 2 11 1 1 0 7 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 131 161 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 147 79 175
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 139 218 67
ND4L (size: 291 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 3 (3.13%)
Alanine (Ala, A)
n = 7 (7.29%)
Serine (Ser, S)
n = 8 (8.33%)
Threonine (Thr, T)
n = 10 (10.42%)
Cysteine (Cys, C)
n = 2 (2.08%)
Valine (Val, V)
n = 5 (5.21%)
Leucine (Leu, L)
n = 23 (23.96%)
Isoleucine (Ile, I)
n = 6 (6.25%)
Methionine (Met, M)
n = 10 (10.42%)
Proline (Pro, P)
n = 2 (2.08%)
Phenylalanine (Phe, F)
n = 4 (4.17%)
Tyrosine (Tyr, Y)
n = 1 (1.04%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.04%)
Glutamic acid (Glu, E)
n = 2 (2.08%)
Asparagine (Asn, N)
n = 4 (4.17%)
Glutamine (Gln, Q)
n = 2 (2.08%)
Histidine (His, H)
n = 1 (1.04%)
Lysine (Lys, K)
n = 3 (3.13%)
Arginine (Arg, R)
n = 2 (2.08%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 3 9 4 1 12 3 3 2 0 2 1 1 1 0 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 1 3 3 0 1 1 1 0 1 0 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 7 0 1 3 2 0 1 1 1 0 0 0 2 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 0 1 2 1 0 0 2 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
18 27 35 17
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 25 15 48
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 24 47 19
ND5 (size: 1773 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (3.9%)
Alanine (Ala, A)
n = 44 (7.46%)
Serine (Ser, S)
n = 45 (7.63%)
Threonine (Thr, T)
n = 83 (14.07%)
Cysteine (Cys, C)
n = 3 (0.51%)
Valine (Val, V)
n = 11 (1.86%)
Leucine (Leu, L)
n = 86 (14.58%)
Isoleucine (Ile, I)
n = 67 (11.36%)
Methionine (Met, M)
n = 39 (6.61%)
Proline (Pro, P)
n = 24 (4.07%)
Phenylalanine (Phe, F)
n = 26 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (1.53%)
Tryptophan (Trp, W)
n = 11 (1.86%)
Aspartic acid (Asp, D)
n = 10 (1.69%)
Glutamic acid (Glu, E)
n = 11 (1.86%)
Asparagine (Asn, N)
n = 38 (6.44%)
Glutamine (Gln, Q)
n = 17 (2.88%)
Histidine (His, H)
n = 12 (2.03%)
Lysine (Lys, K)
n = 22 (3.73%)
Arginine (Arg, R)
n = 9 (1.53%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 41 35 15 6 40 7 18 13 4 2 4 5 0 4 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 8 20 12 4 3 4 11 5 2 5 17 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 47 2 8 7 22 0 3 5 3 6 4 0 10 28 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 8 3 4 6 20 2 0 1 8 0 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 130 257 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 188 120 229
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
35 189 264 103
ND6 (size: 504 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.97%)
Alanine (Ala, A)
n = 9 (5.39%)
Serine (Ser, S)
n = 10 (5.99%)
Threonine (Thr, T)
n = 2 (1.2%)
Cysteine (Cys, C)
n = 6 (3.59%)
Valine (Val, V)
n = 25 (14.97%)
Leucine (Leu, L)
n = 28 (16.77%)
Isoleucine (Ile, I)
n = 8 (4.79%)
Methionine (Met, M)
n = 7 (4.19%)
Proline (Pro, P)
n = 3 (1.8%)
Phenylalanine (Phe, F)
n = 15 (8.98%)
Tyrosine (Tyr, Y)
n = 9 (5.39%)
Tryptophan (Trp, W)
n = 3 (1.8%)
Aspartic acid (Asp, D)
n = 3 (1.8%)
Glutamic acid (Glu, E)
n = 3 (1.8%)
Asparagine (Asn, N)
n = 3 (1.8%)
Glutamine (Gln, Q)
n = 1 (0.6%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (2.4%)
Arginine (Arg, R)
n = 3 (1.8%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 0 3 2 0 0 3 11 0 1 6 3 6 10 15 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 6 0 4 3 2 0 14 1 1 9 2 1 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 1 4 1 0 0 4 1 7 2 2 12 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 3 3 0 1 3 3 0 0 0 0 1 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 12 30 61
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 19 23 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
49 15 25 79
Total protein-coding genes (size: 11276 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 191 (5.09%)
Alanine (Ala, A)
n = 246 (6.55%)
Serine (Ser, S)
n = 272 (7.24%)
Threonine (Thr, T)
n = 427 (11.37%)
Cysteine (Cys, C)
n = 31 (0.83%)
Valine (Val, V)
n = 163 (4.34%)
Leucine (Leu, L)
n = 584 (15.55%)
Isoleucine (Ile, I)
n = 321 (8.55%)
Methionine (Met, M)
n = 241 (6.42%)
Proline (Pro, P)
n = 203 (5.41%)
Phenylalanine (Phe, F)
n = 200 (5.33%)
Tyrosine (Tyr, Y)
n = 105 (2.8%)
Tryptophan (Trp, W)
n = 98 (2.61%)
Aspartic acid (Asp, D)
n = 60 (1.6%)
Glutamic acid (Glu, E)
n = 94 (2.5%)
Asparagine (Asn, N)
n = 156 (4.15%)
Glutamine (Gln, Q)
n = 96 (2.56%)
Histidine (His, H)
n = 96 (2.56%)
Lysine (Lys, K)
n = 101 (2.69%)
Arginine (Arg, R)
n = 65 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
132 189 197 81 63 285 43 93 78 18 34 32 71 26 78 122
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
44 12 19 40 105 94 7 35 46 78 32 21 47 125 10 58
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
140 217 12 48 62 100 13 13 36 35 70 18 19 39 117 21
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
75 70 24 18 42 90 11 10 10 38 7 1 1 4 0 80
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
754 932 1297 773
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
436 1099 712 1509
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
285 1175 1621 675 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​N​a​j​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ a​t​r​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.