Scientific name | Gallus gallus |
Common name | Red junglefowl (chicken) |
Maximum lifespan | 30.00 years (Gallus gallus@AnAge) |
Total mtDNA (size: 16775 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 7710 | 9065 | 5444 | 2266 | 3990 | 5075 |
Base content per 1 kb (bases) | 460 | 540 | 325 | 135 | 238 | 303 |
Base content (%) | 46.0% | 54.0% |
Total protein-coding genes (size: 11372 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 5339 | 6033 | 3975 | 1364 | 2657 | 3376 |
Base content per 1 kb (bases) | 469 | 531 | 350 | 120 | 234 | 297 |
Base content (%) | 46.9% | 53.1% |
Total tRNA-coding genes (size: 1601 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 687 | 914 | 413 | 274 | 394 | 520 |
Base content per 1 kb (bases) | 429 | 571 | 258 | 171 | 246 | 325 |
Base content (%) | 42.9% | 57.1% |
Total rRNA-coding genes (size: 2597 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1211 | 1386 | 736 | 475 | 530 | 856 |
Base content per 1 kb (bases) | 466 | 534 | 283 | 183 | 204 | 330 |
Base content (%) | 46.6% | 53.4% |
12S rRNA gene (size: 976 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 460 | 516 | 282 | 178 | 200 | 316 |
Base content per 1 kb (bases) | 471 | 529 | 289 | 182 | 205 | 324 |
Base content (%) | 47.1% | 52.9% |
16S rRNA gene (size: 1621 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 751 | 870 | 454 | 297 | 330 | 540 |
Base content per 1 kb (bases) | 463 | 537 | 280 | 183 | 204 | 333 |
Base content (%) | 46.3% | 53.7% |
ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 335 | 349 | 264 | 71 | 154 | 195 |
Base content per 1 kb (bases) | 490 | 510 | 386 | 104 | 225 | 285 |
Base content (%) | 49.0% | 51.0% |
ATP8 (size: 165 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 68 | 97 | 60 | 8 | 40 | 57 |
Base content per 1 kb (bases) | 412 | 588 | 364 | 48 | 242 | 345 |
Base content (%) | 41.2% | 58.8% |
COX1 (size: 1548 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 730 | 818 | 483 | 247 | 396 | 422 |
Base content per 1 kb (bases) | 472 | 528 | 312 | 160 | 256 | 273 |
Base content (%) | 47.2% | 52.8% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 327 | 357 | 228 | 99 | 156 | 201 |
Base content per 1 kb (bases) | 478 | 522 | 333 | 145 | 228 | 294 |
Base content (%) | 47.8% | 52.2% |
COX3 (size: 784 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 387 | 397 | 262 | 125 | 179 | 218 |
Base content per 1 kb (bases) | 494 | 506 | 334 | 159 | 228 | 278 |
Base content (%) | 49.4% | 50.6% |
CYTB (size: 1143 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 553 | 590 | 415 | 138 | 276 | 314 |
Base content per 1 kb (bases) | 484 | 516 | 363 | 121 | 241 | 275 |
Base content (%) | 48.4% | 51.6% |
ND1 (size: 975 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 463 | 512 | 339 | 124 | 247 | 265 |
Base content per 1 kb (bases) | 475 | 525 | 348 | 127 | 253 | 272 |
Base content (%) | 47.5% | 52.5% |
ND2 (size: 1041 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 463 | 578 | 373 | 90 | 239 | 339 |
Base content per 1 kb (bases) | 445 | 555 | 358 | 86 | 230 | 326 |
Base content (%) | 44.5% | 55.5% |
ND3 (size: 351 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 158 | 193 | 112 | 46 | 95 | 98 |
Base content per 1 kb (bases) | 450 | 550 | 319 | 131 | 271 | 279 |
Base content (%) | 45.0% | 55.0% |
ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 638 | 740 | 498 | 140 | 327 | 413 |
Base content per 1 kb (bases) | 463 | 537 | 361 | 102 | 237 | 300 |
Base content (%) | 46.3% | 53.7% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 140 | 157 | 103 | 37 | 74 | 83 |
Base content per 1 kb (bases) | 471 | 529 | 347 | 125 | 249 | 279 |
Base content (%) | 47.1% | 52.9% |
ND5 (size: 1818 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 830 | 988 | 638 | 192 | 425 | 563 |
Base content per 1 kb (bases) | 457 | 543 | 351 | 106 | 234 | 310 |
Base content (%) | 45.7% | 54.3% |
ND6 (size: 522 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 252 | 270 | 203 | 49 | 53 | 217 |
Base content per 1 kb (bases) | 483 | 517 | 389 | 94 | 102 | 416 |
Base content (%) | 48.3% | 51.7% |
ATP6 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
4 | 15 | 6 | 7 | 18 | 29 | 3 | 5 | 8 | 0 | 0 | 2 | 2 | 1 | 0 | 7 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 0 | 1 | 1 | 12 | 5 | 0 | 2 | 3 | 4 | 0 | 2 | 5 | 11 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
12 | 7 | 1 | 1 | 5 | 6 | 0 | 0 | 4 | 0 | 3 | 1 | 0 | 1 | 9 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 4 | 0 | 0 | 1 | 2 | 1 | 0 | 2 | 2 | 1 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
37 | 92 | 66 | 33 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
23 | 69 | 34 | 102 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
11 | 103 | 95 | 19 |
ATP8 (size: 165 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLNPNPWFSIMLLTWFTFSLLIQPKLLSFTLTNNPANKITTTKPTPWTWPWT* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
1 | 2 | 1 | 3 | 1 | 2 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 3 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
4 | 3 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
1 | 17 | 23 | 14 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
5 | 22 | 11 | 17 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
2 | 21 | 23 | 9 |
COX1 (size: 1548 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
15 | 26 | 21 | 10 | 14 | 27 | 4 | 7 | 8 | 1 | 6 | 12 | 13 | 2 | 11 | 32 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 1 | 7 | 24 | 14 | 1 | 6 | 14 | 23 | 3 | 3 | 16 | 12 | 0 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
16 | 15 | 1 | 1 | 8 | 14 | 0 | 0 | 3 | 3 | 15 | 2 | 0 | 3 | 12 | 7 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 10 | 0 | 3 | 12 | 8 | 1 | 0 | 3 | 6 | 0 | 0 | 1 | 0 | 0 | 15 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
150 | 123 | 134 | 109 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
77 | 140 | 95 | 204 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
20 | 220 | 193 | 83 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
5 | 12 | 9 | 4 | 10 | 14 | 3 | 1 | 7 | 0 | 2 | 5 | 8 | 1 | 4 | 4 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 3 | 3 | 9 | 3 | 0 | 0 | 2 | 5 | 1 | 2 | 9 | 2 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
9 | 4 | 0 | 2 | 7 | 8 | 0 | 0 | 2 | 1 | 7 | 0 | 0 | 1 | 3 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
8 | 12 | 2 | 3 | 11 | 4 | 1 | 0 | 2 | 3 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
67 | 65 | 53 | 43 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
23 | 60 | 62 | 83 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
9 | 103 | 86 | 30 |
COX3 (size: 784 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 12 | 8 | 3 | 8 | 18 | 3 | 1 | 6 | 1 | 3 | 7 | 4 | 0 | 2 | 22 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 1 | 3 | 9 | 10 | 0 | 0 | 7 | 10 | 2 | 0 | 4 | 8 | 0 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 12 | 0 | 3 | 5 | 5 | 1 | 0 | 6 | 1 | 8 | 3 | 0 | 1 | 3 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
15 | 6 | 2 | 0 | 4 | 3 | 1 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
67 | 73 | 60 | 61 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 70 | 53 | 95 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 119 | 105 | 22 |
CYTB (size: 1143 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
8 | 25 | 7 | 7 | 24 | 28 | 1 | 3 | 7 | 0 | 2 | 3 | 8 | 1 | 5 | 24 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 2 | 2 | 15 | 10 | 0 | 2 | 12 | 8 | 2 | 0 | 11 | 14 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
16 | 9 | 0 | 4 | 14 | 8 | 0 | 0 | 1 | 3 | 11 | 1 | 0 | 2 | 18 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 6 | 1 | 0 | 7 | 9 | 1 | 0 | 1 | 5 | 2 | 0 | 0 | 1 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
79 | 113 | 102 | 87 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
47 | 106 | 79 | 149 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
12 | 196 | 133 | 40 |
ND1 (size: 975 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
9 | 17 | 10 | 7 | 17 | 29 | 6 | 7 | 4 | 1 | 1 | 6 | 3 | 2 | 7 | 12 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 1 | 2 | 19 | 8 | 0 | 1 | 4 | 6 | 1 | 1 | 11 | 14 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
15 | 7 | 0 | 3 | 8 | 8 | 0 | 0 | 7 | 5 | 8 | 0 | 0 | 3 | 9 | 2 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 7 | 4 | 0 | 4 | 5 | 2 | 0 | 2 | 4 | 2 | 0 | 0 | 1 | 0 | 8 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
68 | 100 | 89 | 68 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
36 | 99 | 55 | 135 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
20 | 140 | 121 | 44 |
ND2 (size: 1041 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 27 | 13 | 3 | 24 | 31 | 1 | 8 | 10 | 1 | 0 | 2 | 4 | 0 | 0 | 11 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 2 | 1 | 10 | 7 | 2 | 0 | 6 | 5 | 0 | 0 | 9 | 9 | 1 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
23 | 16 | 0 | 1 | 14 | 14 | 1 | 0 | 5 | 2 | 3 | 0 | 1 | 2 | 11 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 4 | 1 | 0 | 1 | 12 | 1 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 1 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
43 | 102 | 134 | 68 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
32 | 117 | 58 | 140 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 154 | 147 | 31 |
ND3 (size: 1041 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 27 | 13 | 3 | 24 | 31 | 1 | 8 | 10 | 1 | 0 | 2 | 4 | 0 | 0 | 11 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 0 | 2 | 1 | 10 | 7 | 2 | 0 | 6 | 5 | 0 | 0 | 9 | 9 | 1 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
23 | 16 | 0 | 1 | 14 | 14 | 1 | 0 | 5 | 2 | 3 | 0 | 1 | 2 | 11 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 4 | 1 | 0 | 1 | 12 | 1 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 1 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
43 | 102 | 134 | 68 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
32 | 117 | 58 | 140 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 154 | 147 | 31 |
ND4 (size: 1378 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
8 | 32 | 22 | 9 | 28 | 42 | 4 | 12 | 10 | 0 | 1 | 4 | 5 | 0 | 2 | 11 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 3 | 5 | 13 | 12 | 0 | 2 | 10 | 6 | 0 | 3 | 16 | 11 | 0 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
24 | 18 | 0 | 5 | 15 | 11 | 1 | 1 | 10 | 2 | 12 | 1 | 2 | 1 | 12 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 9 | 1 | 0 | 2 | 10 | 1 | 0 | 3 | 7 | 1 | 0 | 0 | 0 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
70 | 150 | 151 | 88 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
55 | 142 | 76 | 186 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 206 | 186 | 52 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
0 | 4 | 5 | 2 | 2 | 14 | 0 | 0 | 2 | 0 | 0 | 0 | 3 | 0 | 0 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 3 | 2 | 4 | 4 | 0 | 0 | 3 | 1 | 0 | 1 | 2 | 2 | 0 | 0 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
1 | 4 | 0 | 5 | 1 | 3 | 0 | 0 | 4 | 1 | 0 | 0 | 0 | 0 | 3 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
5 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
21 | 33 | 22 | 23 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
14 | 29 | 17 | 39 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
2 | 41 | 44 | 12 |
ND5 (size: 1818 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
21 | 39 | 27 | 14 | 33 | 43 | 5 | 9 | 14 | 1 | 2 | 3 | 4 | 0 | 10 | 20 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 1 | 5 | 9 | 21 | 16 | 0 | 2 | 15 | 14 | 1 | 4 | 20 | 13 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
34 | 27 | 2 | 3 | 21 | 14 | 0 | 0 | 11 | 0 | 11 | 1 | 0 | 7 | 17 | 4 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
13 | 12 | 2 | 0 | 7 | 22 | 1 | 0 | 3 | 5 | 0 | 0 | 0 | 1 | 0 | 11 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
108 | 172 | 219 | 107 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
69 | 193 | 112 | 232 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 273 | 232 | 86 |
ND6 (size: 522 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
3 | 0 | 1 | 2 | 1 | 2 | 2 | 6 | 0 | 0 | 14 | 1 | 2 | 20 | 13 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 3 | 0 | 6 | 0 | 1 | 6 | 4 | 1 | 3 | 19 | 3 | 0 | 0 | 1 | 2 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 0 | 0 | 6 | 1 | 2 | 1 | 2 | 0 | 8 | 0 | 3 | 13 | 1 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 2 | 5 | 0 | 0 | 1 | 1 | 0 | 0 | 4 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
84 | 16 | 14 | 60 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 29 | 18 | 84 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
76 | 4 | 21 | 73 |
Total protein-coding genes (size: 11390 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
86 | 218 | 135 | 78 | 185 | 288 | 35 | 62 | 80 | 6 | 31 | 45 | 57 | 27 | 59 | 160 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
33 | 5 | 23 | 42 | 144 | 94 | 9 | 20 | 79 | 87 | 29 | 21 | 108 | 103 | 3 | 55 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
164 | 126 | 4 | 35 | 101 | 98 | 4 | 3 | 54 | 26 | 80 | 12 | 16 | 22 | 104 | 26 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
87 | 78 | 16 | 11 | 53 | 79 | 11 | 1 | 16 | 45 | 10 | 0 | 1 | 9 | 1 | 96 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
822 | 1092 | 1095 | 787 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
481 | 1111 | 689 | 1515 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
217 | 1621 | 1437 | 521 |
Failed to understand id: ?term=("Gallus gallus"[Organism]) AND (refseq[filter] AND mitochondrion[filter])