Viewing data for Pagellus bogaraveo


Scientific name Pagellus bogaraveo
Common name Blackspot seabream
Maximum lifespan 15.00 years (Pagellus bogaraveo@AnAge)

Total mtDNA (size: 16941 bases) GC AT G C A T
Base content (bases) 7857 9084 4935 2922 4520 4564
Base content per 1 kb (bases) 464 536 291 172 267 269
Base content (%) 46.4% 53.6%
Total protein-coding genes (size: 11415 bases) GC AT G C A T
Base content (bases) 5376 6039 3558 1818 3183 2856
Base content per 1 kb (bases) 471 529 312 159 279 250
Base content (%) 47.1% 52.9%
D-loop (size: 1195 bases) GC AT G C A T
Base content (bases) 447 748 256 191 363 385
Base content per 1 kb (bases) 374 626 214 160 304 322
Base content (%) 37.4% 62.6%
Total tRNA-coding genes (size: 1553 bases) GC AT G C A T
Base content (bases) 713 840 400 313 377 463
Base content per 1 kb (bases) 459 541 258 202 243 298
Base content (%) 45.9% 54.1%
Total rRNA-coding genes (size: 2648 bases) GC AT G C A T
Base content (bases) 1249 1399 679 570 566 833
Base content per 1 kb (bases) 472 528 256 215 214 315
Base content (%) 47.2% 52.8%
12S rRNA gene (size: 951 bases) GC AT G C A T
Base content (bases) 458 493 243 215 211 282
Base content per 1 kb (bases) 482 518 256 226 222 297
Base content (%) 48.2% 51.8%
16S rRNA gene (size: 1697 bases) GC AT G C A T
Base content (bases) 791 906 436 355 355 551
Base content per 1 kb (bases) 466 534 257 209 209 325
Base content (%) 46.6% 53.4%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 308 376 215 93 214 162
Base content per 1 kb (bases) 450 550 314 136 313 237
Base content (%) 45.0% 55.0%
ATP8 (size: 165 bases) GC AT G C A T
Base content (bases) 79 86 58 21 38 48
Base content per 1 kb (bases) 479 521 352 127 230 291
Base content (%) 47.9% 52.1%
COX1 (size: 1566 bases) GC AT G C A T
Base content (bases) 728 838 430 298 459 379
Base content per 1 kb (bases) 465 535 275 190 293 242
Base content (%) 46.5% 53.5%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 305 386 189 116 198 188
Base content per 1 kb (bases) 441 559 274 168 287 272
Base content (%) 44.1% 55.9%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 381 404 240 141 216 188
Base content per 1 kb (bases) 485 515 306 180 275 239
Base content (%) 48.5% 51.5%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 518 623 341 177 342 281
Base content per 1 kb (bases) 454 546 299 155 300 246
Base content (%) 45.4% 54.6%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 478 497 316 162 284 213
Base content per 1 kb (bases) 490 510 324 166 291 218
Base content (%) 49.0% 51.0%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 515 530 371 144 276 254
Base content per 1 kb (bases) 493 507 355 138 264 243
Base content (%) 49.3% 50.7%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 175 174 119 56 106 68
Base content per 1 kb (bases) 501 499 341 160 304 195
Base content (%) 50.1% 49.9%
ND4 (size: 1375 bases) GC AT G C A T
Base content (bases) 679 696 457 222 368 328
Base content per 1 kb (bases) 494 506 332 161 268 239
Base content (%) 49.4% 50.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 149 148 102 47 88 60
Base content per 1 kb (bases) 502 498 343 158 296 202
Base content (%) 50.2% 49.8%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 823 1016 552 271 521 495
Base content per 1 kb (bases) 448 552 300 147 283 269
Base content (%) 44.8% 55.2%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 242 280 169 73 79 201
Base content per 1 kb (bases) 464 536 324 140 151 385
Base content (%) 46.4% 53.6%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (5.29%)
Alanine (Ala, A)
n = 15 (6.61%)
Serine (Ser, S)
n = 14 (6.17%)
Threonine (Thr, T)
n = 16 (7.05%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 60 (26.43%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 14 (6.17%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 8 5 19 15 11 6 7 7 2 4 6 2 1 10 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 2 7 5 1 0 6 5 1 2 6 7 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 6 1 2 3 4 0 1 4 2 1 0 2 5 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 1 1 0 0 1 4 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 86 56 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
28 56 32 112
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 73 74 61
ATP8 (size: 165 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWVIFLTILPLKVGAHTFPNEPTLQSTDTPKTESWTWPW*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.85%)
Alanine (Ala, A)
n = 3 (5.56%)
Serine (Ser, S)
n = 3 (5.56%)
Threonine (Thr, T)
n = 7 (12.96%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.56%)
Leucine (Leu, L)
n = 6 (11.11%)
Isoleucine (Ile, I)
n = 3 (5.56%)
Methionine (Met, M)
n = 1 (1.85%)
Proline (Pro, P)
n = 8 (14.81%)
Phenylalanine (Phe, F)
n = 4 (7.41%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.26%)
Aspartic acid (Asp, D)
n = 1 (1.85%)
Glutamic acid (Glu, E)
n = 2 (3.7%)
Asparagine (Asn, N)
n = 2 (3.7%)
Glutamine (Gln, Q)
n = 2 (3.7%)
Histidine (His, H)
n = 1 (1.85%)
Lysine (Lys, K)
n = 2 (3.7%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 3 0 2 1 1 1 1 2 0 0 1 2 0 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 2 1 0 0 0 1 0 3 4 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 4 0 0 2 0 0 0 1 0 0 0 0 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 0 1 2 0 0 0 0 0 0 0 0 1 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
10 16 16 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 20 11 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 22 21 8
COX1 (size: 1566 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.21%)
Alanine (Ala, A)
n = 47 (9.02%)
Serine (Ser, S)
n = 30 (5.76%)
Threonine (Thr, T)
n = 36 (6.91%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 41 (7.87%)
Leucine (Leu, L)
n = 61 (11.71%)
Isoleucine (Ile, I)
n = 42 (8.06%)
Methionine (Met, M)
n = 25 (4.8%)
Proline (Pro, P)
n = 28 (5.37%)
Phenylalanine (Phe, F)
n = 42 (8.06%)
Tyrosine (Tyr, Y)
n = 18 (3.45%)
Tryptophan (Trp, W)
n = 17 (3.26%)
Aspartic acid (Asp, D)
n = 14 (2.69%)
Glutamic acid (Glu, E)
n = 12 (2.3%)
Asparagine (Asn, N)
n = 14 (2.69%)
Glutamine (Gln, Q)
n = 7 (1.34%)
Histidine (His, H)
n = 20 (3.84%)
Lysine (Lys, K)
n = 10 (1.92%)
Arginine (Arg, R)
n = 8 (1.54%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 16 11 14 14 16 7 9 4 3 12 9 12 8 21 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
14 0 1 11 20 13 3 9 13 18 8 10 7 6 5 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 14 1 9 6 10 0 2 3 3 15 1 1 4 10 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 10 2 1 13 8 2 3 1 4 0 0 1 0 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
162 114 133 113
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
80 136 95 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
56 180 151 135
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 19 (8.3%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 8 (3.49%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 17 (7.42%)
Leucine (Leu, L)
n = 29 (12.66%)
Isoleucine (Ile, I)
n = 19 (8.3%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 10 (4.37%)
Tyrosine (Tyr, Y)
n = 10 (4.37%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 9 (3.93%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 8 5 10 4 5 1 7 7 1 3 7 6 1 7 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 2 4 10 5 0 3 2 3 1 1 4 9 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 2 2 4 6 2 2 1 2 6 4 0 2 1 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 13 2 5 8 5 0 2 4 0 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 57 50 50
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 55 64 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 77 74 61
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 23 (8.85%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 7 (2.69%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 8 4 5 10 6 4 4 6 2 5 6 4 1 9 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 1 10 9 1 4 9 5 4 2 5 4 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 10 2 4 2 5 0 1 2 2 9 2 2 1 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 0 3 4 2 0 2 0 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 66 54 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 68 53 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 106 80 52
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (7.39%)
Alanine (Ala, A)
n = 32 (8.44%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 23 (6.07%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 29 (7.65%)
Leucine (Leu, L)
n = 60 (15.83%)
Isoleucine (Ile, I)
n = 28 (7.39%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 27 (7.12%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 14 5 15 18 15 2 9 6 1 11 10 6 2 11 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 2 6 9 17 0 3 8 15 2 6 9 6 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 6 2 8 10 3 0 0 2 4 11 1 1 10 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 1 2 7 9 0 0 2 3 3 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
104 98 89 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 97 76 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 146 116 99
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 36 (11.11%)
Serine (Ser, S)
n = 22 (6.79%)
Threonine (Thr, T)
n = 17 (5.25%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 23 (7.1%)
Leucine (Leu, L)
n = 66 (20.37%)
Isoleucine (Ile, I)
n = 20 (6.17%)
Methionine (Met, M)
n = 8 (2.47%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 5 (1.54%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 11 2 15 19 14 6 7 5 1 10 7 4 2 9 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 5 19 9 3 4 5 6 3 3 14 6 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 5 0 6 8 4 1 0 3 5 7 0 5 4 7 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 7 4 2 2 7 0 1 1 6 0 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
92 97 66 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 96 57 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 123 90 79
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 42 (12.1%)
Serine (Ser, S)
n = 26 (7.49%)
Threonine (Thr, T)
n = 38 (10.95%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (3.75%)
Leucine (Leu, L)
n = 76 (21.9%)
Isoleucine (Ile, I)
n = 20 (5.76%)
Methionine (Met, M)
n = 12 (3.46%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 16 (4.61%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 9 (2.59%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 12 8 19 23 17 6 7 12 1 6 4 2 1 8 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 5 24 10 3 1 6 8 3 5 7 7 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 10 0 3 10 9 0 2 2 2 4 1 4 3 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 2 0 2 7 1 1 2 1 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 111 91 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 122 52 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 138 111 72
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 42 (12.1%)
Serine (Ser, S)
n = 26 (7.49%)
Threonine (Thr, T)
n = 38 (10.95%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (3.75%)
Leucine (Leu, L)
n = 76 (21.9%)
Isoleucine (Ile, I)
n = 20 (5.76%)
Methionine (Met, M)
n = 12 (3.46%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 16 (4.61%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 13 (3.75%)
Histidine (His, H)
n = 9 (2.59%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 12 8 19 23 17 6 7 12 1 6 4 2 1 8 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 5 24 10 3 1 6 8 3 5 7 7 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 10 0 3 10 9 0 2 2 2 4 1 4 3 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 2 0 2 7 1 1 2 1 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 111 91 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 122 52 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 138 111 72
ND4 (size: 1375 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (6.56%)
Alanine (Ala, A)
n = 37 (8.1%)
Serine (Ser, S)
n = 34 (7.44%)
Threonine (Thr, T)
n = 33 (7.22%)
Cysteine (Cys, C)
n = 4 (0.88%)
Valine (Val, V)
n = 20 (4.38%)
Leucine (Leu, L)
n = 95 (20.79%)
Isoleucine (Ile, I)
n = 31 (6.78%)
Methionine (Met, M)
n = 22 (4.81%)
Proline (Pro, P)
n = 32 (7.0%)
Phenylalanine (Phe, F)
n = 14 (3.06%)
Tyrosine (Tyr, Y)
n = 17 (3.72%)
Tryptophan (Trp, W)
n = 18 (3.94%)
Aspartic acid (Asp, D)
n = 4 (0.88%)
Glutamic acid (Glu, E)
n = 13 (2.84%)
Asparagine (Asn, N)
n = 11 (2.41%)
Glutamine (Gln, Q)
n = 10 (2.19%)
Histidine (His, H)
n = 11 (2.41%)
Lysine (Lys, K)
n = 11 (2.41%)
Arginine (Arg, R)
n = 11 (2.41%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 14 11 21 32 18 10 13 9 1 6 7 6 1 7 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 0 4 7 21 8 1 0 14 10 6 10 15 5 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 12 1 6 14 6 0 2 6 9 8 5 1 2 9 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 8 5 0 4 9 2 1 2 7 1 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
104 145 116 93
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 128 77 182
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 184 135 92
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 12 (12.24%)
Serine (Ser, S)
n = 14 (14.29%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 4 8 6 3 4 3 3 0 2 0 0 0 4 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 3 3 6 0 0 3 2 0 0 2 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 1 1 0 6 3 1 0 4 0 0 1 0 0 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 1 1 0 1 0 0 1 0 2 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
22 33 19 25
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 31 12 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 38 29 23
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.9%)
Alanine (Ala, A)
n = 53 (8.66%)
Serine (Ser, S)
n = 45 (7.35%)
Threonine (Thr, T)
n = 54 (8.82%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 34 (5.56%)
Leucine (Leu, L)
n = 96 (15.69%)
Isoleucine (Ile, I)
n = 47 (7.68%)
Methionine (Met, M)
n = 31 (5.07%)
Proline (Pro, P)
n = 30 (4.9%)
Phenylalanine (Phe, F)
n = 42 (6.86%)
Tyrosine (Tyr, Y)
n = 11 (1.8%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 14 (2.29%)
Glutamic acid (Glu, E)
n = 13 (2.12%)
Asparagine (Asn, N)
n = 29 (4.74%)
Glutamine (Gln, Q)
n = 17 (2.78%)
Histidine (His, H)
n = 14 (2.29%)
Lysine (Lys, K)
n = 21 (3.43%)
Arginine (Arg, R)
n = 11 (1.8%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 21 16 29 22 27 10 8 12 5 13 12 8 1 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
15 0 6 9 22 18 4 7 14 7 2 7 12 8 3 15
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 13 3 4 14 12 1 4 10 4 7 1 0 11 18 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 10 3 5 9 17 4 1 1 9 0 0 0 1 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
144 160 196 113
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
75 168 120 250
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
52 224 179 158
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (12.72%)
Alanine (Ala, A)
n = 22 (12.72%)
Serine (Ser, S)
n = 16 (9.25%)
Threonine (Thr, T)
n = 3 (1.73%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 20 (11.56%)
Leucine (Leu, L)
n = 28 (16.18%)
Isoleucine (Ile, I)
n = 5 (2.89%)
Methionine (Met, M)
n = 11 (6.36%)
Proline (Pro, P)
n = 2 (1.16%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 7 (4.05%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 5 (2.89%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 4 (2.31%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 3 4 2 1 5 9 0 0 9 0 3 8 9 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 3 0 13 0 2 7 3 1 5 13 1 0 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 0 7 2 4 0 3 0 6 1 2 7 1 0 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 0 5 3 0 1 0 1 0 0 4 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 23 24 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 40 22 74
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
59 10 33 72
Total protein-coding genes (size: 11434 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 249 (6.54%)
Alanine (Ala, A)
n = 346 (9.09%)
Serine (Ser, S)
n = 267 (7.01%)
Threonine (Thr, T)
n = 272 (7.14%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 237 (6.22%)
Leucine (Leu, L)
n = 659 (17.31%)
Isoleucine (Ile, I)
n = 259 (6.8%)
Methionine (Met, M)
n = 153 (4.02%)
Proline (Pro, P)
n = 218 (5.72%)
Phenylalanine (Phe, F)
n = 238 (6.25%)
Tyrosine (Tyr, Y)
n = 113 (2.97%)
Tryptophan (Trp, W)
n = 118 (3.1%)
Aspartic acid (Asp, D)
n = 77 (2.02%)
Glutamic acid (Glu, E)
n = 102 (2.68%)
Asparagine (Asn, N)
n = 112 (2.94%)
Glutamine (Gln, Q)
n = 93 (2.44%)
Histidine (His, H)
n = 108 (2.84%)
Lysine (Lys, K)
n = 78 (2.05%)
Arginine (Arg, R)
n = 77 (2.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
140 119 74 168 177 139 64 84 75 18 83 71 57 26 119 119
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
79 6 20 68 150 105 23 34 84 87 44 51 90 62 15 50
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
123 85 14 53 89 63 6 16 40 44 69 14 27 42 70 26
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
82 75 27 23 54 68 10 13 15 40 9 0 1 4 2 104
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1011 1044 931 823
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
527 1047 689 1546
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
379 1372 1122 936 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​a​g​e​l​l​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ b​o​g​a​r​a​v​e​o​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.