Viewing data for Lota lota


Scientific name Lota lota
Common name Burbot
Maximum lifespan 20.00 years (Lota lota@AnAge)

Total mtDNA (size: 16527 bases) GC AT G C A T
Base content (bases) 7279 9248 4581 2698 4559 4689
Base content per 1 kb (bases) 440 560 277 163 276 284
Base content (%) 44.0% 56.0%
Total protein-coding genes (size: 11405 bases) GC AT G C A T
Base content (bases) 5036 6369 3350 1686 3284 3085
Base content per 1 kb (bases) 442 558 294 148 288 270
Base content (%) 44.2% 55.8%
D-loop (size: 803 bases) GC AT G C A T
Base content (bases) 294 509 174 120 270 239
Base content per 1 kb (bases) 366 634 217 149 336 298
Base content (%) 36.6% 63.4%
Total tRNA-coding genes (size: 1540 bases) GC AT G C A T
Base content (bases) 700 840 388 312 375 465
Base content per 1 kb (bases) 455 545 252 203 244 302
Base content (%) 45.5% 54.5%
Total rRNA-coding genes (size: 2613 bases) GC AT G C A T
Base content (bases) 1163 1450 617 546 594 856
Base content per 1 kb (bases) 445 555 236 209 227 328
Base content (%) 44.5% 55.5%
12S rRNA gene (size: 946 bases) GC AT G C A T
Base content (bases) 435 511 225 210 210 301
Base content per 1 kb (bases) 460 540 238 222 222 318
Base content (%) 46.0% 54.0%
16S rRNA gene (size: 1667 bases) GC AT G C A T
Base content (bases) 728 939 392 336 384 555
Base content per 1 kb (bases) 437 563 235 202 230 333
Base content (%) 43.7% 56.3%

ATP6 (size: 683 bases) GC AT G C A T
Base content (bases) 299 384 211 88 209 175
Base content per 1 kb (bases) 438 562 309 129 306 256
Base content (%) 43.8% 56.2%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 71 97 56 15 43 54
Base content per 1 kb (bases) 423 577 333 89 256 321
Base content (%) 42.3% 57.7%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 698 853 418 280 461 392
Base content per 1 kb (bases) 450 550 270 181 297 253
Base content (%) 45.0% 55.0%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 299 392 190 109 194 198
Base content per 1 kb (bases) 433 567 275 158 281 287
Base content (%) 43.3% 56.7%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 364 421 232 132 228 193
Base content per 1 kb (bases) 464 536 296 168 290 246
Base content (%) 46.4% 53.6%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 483 658 318 165 357 301
Base content per 1 kb (bases) 423 577 279 145 313 264
Base content (%) 42.3% 57.7%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 441 534 290 151 293 241
Base content per 1 kb (bases) 452 548 297 155 301 247
Base content (%) 45.2% 54.8%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 459 586 327 132 303 283
Base content per 1 kb (bases) 439 561 313 126 290 271
Base content (%) 43.9% 56.1%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 159 190 111 48 109 81
Base content per 1 kb (bases) 456 544 318 138 312 232
Base content (%) 45.6% 54.4%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 628 753 424 204 392 361
Base content per 1 kb (bases) 455 545 307 148 284 261
Base content (%) 45.5% 54.5%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 138 159 98 40 83 76
Base content per 1 kb (bases) 465 535 330 135 279 256
Base content (%) 46.5% 53.5%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 764 1075 514 250 537 538
Base content per 1 kb (bases) 415 585 279 136 292 293
Base content (%) 41.5% 58.5%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 240 282 166 74 80 202
Base content per 1 kb (bases) 460 540 318 142 153 387
Base content (%) 46.0% 54.0%

ATP6 (size: 683 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 18 (7.96%)
Serine (Ser, S)
n = 12 (5.31%)
Threonine (Thr, T)
n = 19 (8.41%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (5.31%)
Leucine (Leu, L)
n = 53 (23.45%)
Isoleucine (Ile, I)
n = 18 (7.96%)
Methionine (Met, M)
n = 12 (5.31%)
Proline (Pro, P)
n = 18 (7.96%)
Phenylalanine (Phe, F)
n = 12 (5.31%)
Tyrosine (Tyr, Y)
n = 4 (1.77%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 9 (3.98%)
Glutamine (Gln, Q)
n = 7 (3.1%)
Histidine (His, H)
n = 5 (2.21%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 6 10 16 11 16 1 6 6 1 5 3 2 2 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 8 7 0 0 3 5 3 7 8 3 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 8 1 1 2 3 1 2 3 2 2 0 3 2 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 1 0 1 0 1 1 3 1 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
46 80 64 37
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 62 31 107
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 69 79 64
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFMIFMFTWVIFLTILPPKVLAHTFPNEPSPQSMTAPKTTPWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 2 (3.64%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.64%)
Leucine (Leu, L)
n = 4 (7.27%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 4 (7.27%)
Proline (Pro, P)
n = 11 (20.0%)
Phenylalanine (Phe, F)
n = 5 (9.09%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.82%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 0 2 1 0 0 0 3 2 0 0 0 2 0 0 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 2 1 0 0 0 0 0 3 5 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 0 1 0 0 0 0 1 0 0 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 0 1 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 16 19 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 21 11 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 19 24 10
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 48 (9.3%)
Serine (Ser, S)
n = 27 (5.23%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 42 (8.14%)
Leucine (Leu, L)
n = 64 (12.4%)
Isoleucine (Ile, I)
n = 37 (7.17%)
Methionine (Met, M)
n = 26 (5.04%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 9 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 14 19 15 11 22 11 4 6 2 8 16 14 4 21 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 0 14 18 16 0 6 16 18 6 8 10 8 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 18 2 5 7 9 2 1 3 8 10 0 1 8 6 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 9 2 6 9 8 0 2 1 4 2 0 0 1 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
162 123 125 107
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 135 94 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
41 160 173 143
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 9 (3.93%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 17 (7.42%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 22 (9.61%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 9 7 8 4 9 1 6 8 0 9 3 4 1 5 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 1 6 9 2 0 2 6 1 5 8 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 4 0 2 7 5 0 0 3 7 2 0 0 3 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 12 3 3 10 4 0 1 3 2 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 60 53 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 55 63 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 75 82 61
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 20 (7.69%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 23 (8.85%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 20 (7.69%)
Leucine (Leu, L)
n = 30 (11.54%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 6 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 8 5 5 10 5 2 8 6 1 8 4 8 0 11 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 4 8 7 1 3 12 4 2 3 7 2 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 9 0 1 4 6 0 0 3 6 6 0 0 1 0 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 2 1 4 1 1 1 0 5 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 64 52 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 66 54 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 102 86 61
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 26 (6.86%)
Serine (Ser, S)
n = 21 (5.54%)
Threonine (Thr, T)
n = 25 (6.6%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 32 (8.44%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 27 (7.12%)
Methionine (Met, M)
n = 11 (2.9%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 33 (8.71%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 20 (5.28%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 8 (2.11%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 8 10 14 9 19 5 10 5 1 11 4 17 0 18 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 4 14 8 0 3 11 10 2 6 9 6 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 10 0 6 5 9 0 0 1 5 8 1 1 8 12 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 1 0 10 7 1 1 2 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 95 92 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 93 76 161
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 130 133 103
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.25%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 29 (8.95%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 21 (6.48%)
Leucine (Leu, L)
n = 61 (18.83%)
Isoleucine (Ile, I)
n = 20 (6.17%)
Methionine (Met, M)
n = 12 (3.7%)
Proline (Pro, P)
n = 22 (6.79%)
Phenylalanine (Phe, F)
n = 17 (5.25%)
Tyrosine (Tyr, Y)
n = 13 (4.01%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 9 (2.78%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 6 8 13 13 15 2 15 5 1 4 7 9 1 10 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 6 16 11 1 0 9 4 4 3 17 1 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 8 0 7 6 9 1 4 2 7 6 2 3 4 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 1 3 6 1 1 1 3 3 0 0 1 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 83 74 81
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 99 55 131
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 108 112 81
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 40 (11.53%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 38 (10.95%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.46%)
Leucine (Leu, L)
n = 66 (19.02%)
Isoleucine (Ile, I)
n = 24 (6.92%)
Methionine (Met, M)
n = 16 (4.61%)
Proline (Pro, P)
n = 21 (6.05%)
Phenylalanine (Phe, F)
n = 16 (4.61%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 9 12 15 11 18 3 17 12 2 4 3 5 0 9 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 11 19 10 0 2 9 5 0 8 10 3 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 16 1 6 8 7 1 4 3 3 3 3 2 6 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 2 2 1 2 8 0 2 1 1 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 93 105 75
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 121 54 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 113 124 93
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 40 (11.53%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 38 (10.95%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.46%)
Leucine (Leu, L)
n = 66 (19.02%)
Isoleucine (Ile, I)
n = 24 (6.92%)
Methionine (Met, M)
n = 16 (4.61%)
Proline (Pro, P)
n = 21 (6.05%)
Phenylalanine (Phe, F)
n = 16 (4.61%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 9 12 15 11 18 3 17 12 2 4 3 5 0 9 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 11 19 10 0 2 9 5 0 8 10 3 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 16 1 6 8 7 1 4 3 3 3 3 2 6 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 2 2 1 2 8 0 2 1 1 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 93 105 75
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 121 54 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 113 124 93
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.88%)
Alanine (Ala, A)
n = 44 (9.59%)
Serine (Ser, S)
n = 29 (6.32%)
Threonine (Thr, T)
n = 37 (8.06%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 17 (3.7%)
Leucine (Leu, L)
n = 101 (22.0%)
Isoleucine (Ile, I)
n = 29 (6.32%)
Methionine (Met, M)
n = 28 (6.1%)
Proline (Pro, P)
n = 28 (6.1%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 3 (0.65%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 15 (3.27%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 9 (1.96%)
Lysine (Lys, K)
n = 9 (1.96%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 12 21 26 30 23 6 14 10 1 6 4 7 0 11 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 4 8 22 14 0 5 12 7 3 9 8 10 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 17 2 4 8 7 1 1 8 9 5 4 2 5 10 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 8 2 1 2 5 4 2 2 6 1 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 144 127 88
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
69 129 71 191
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
34 151 163 112
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 15 (15.31%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 5 3 7 7 0 7 3 0 0 0 1 0 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 4 7 4 0 0 3 2 0 2 0 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 3 1 0 4 3 0 1 0 0 1 0 0 1 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 1 1 2 0 0 0 0 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
25 29 20 25
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
12 33 16 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 36 40 20
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.23%)
Alanine (Ala, A)
n = 59 (9.64%)
Serine (Ser, S)
n = 49 (8.01%)
Threonine (Thr, T)
n = 60 (9.8%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 29 (4.74%)
Leucine (Leu, L)
n = 107 (17.48%)
Isoleucine (Ile, I)
n = 48 (7.84%)
Methionine (Met, M)
n = 22 (3.59%)
Proline (Pro, P)
n = 26 (4.25%)
Phenylalanine (Phe, F)
n = 36 (5.88%)
Tyrosine (Tyr, Y)
n = 10 (1.63%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 13 (2.12%)
Glutamic acid (Glu, E)
n = 11 (1.8%)
Asparagine (Asn, N)
n = 26 (4.25%)
Glutamine (Gln, Q)
n = 21 (3.43%)
Histidine (His, H)
n = 14 (2.29%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 9 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 18 19 24 15 31 11 23 19 2 7 4 18 0 19 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 4 11 28 20 0 5 5 17 5 8 11 7 0 20
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 19 0 11 14 8 0 5 11 4 6 2 3 13 13 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 10 1 4 9 18 2 0 1 8 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
144 151 192 126
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 178 116 242
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 185 230 169
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.03%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 3 (1.73%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 25 (14.45%)
Leucine (Leu, L)
n = 34 (19.65%)
Isoleucine (Ile, I)
n = 5 (2.89%)
Methionine (Met, M)
n = 6 (3.47%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 7 (4.05%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 7 (4.05%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 7 (4.05%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 1 2 11 0 3 0 15 0 0 12 0 6 7 6 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 7 3 5 4 6 1 5 14 4 1 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 6 3 2 0 1 0 6 2 5 5 0 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 5 2 0 0 0 0 0 1 2 0 1 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 23 17 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 38 19 77
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 13 44 70
Total protein-coding genes (size: 11427 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 242 (6.36%)
Alanine (Ala, A)
n = 353 (9.28%)
Serine (Ser, S)
n = 258 (6.78%)
Threonine (Thr, T)
n = 289 (7.6%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 234 (6.15%)
Leucine (Leu, L)
n = 660 (17.35%)
Isoleucine (Ile, I)
n = 258 (6.78%)
Methionine (Met, M)
n = 164 (4.31%)
Proline (Pro, P)
n = 217 (5.7%)
Phenylalanine (Phe, F)
n = 230 (6.04%)
Tyrosine (Tyr, Y)
n = 111 (2.92%)
Tryptophan (Trp, W)
n = 120 (3.15%)
Aspartic acid (Asp, D)
n = 75 (1.97%)
Glutamic acid (Glu, E)
n = 99 (2.6%)
Asparagine (Asn, N)
n = 119 (3.13%)
Glutamine (Gln, Q)
n = 96 (2.52%)
Histidine (His, H)
n = 105 (2.76%)
Lysine (Lys, K)
n = 70 (1.84%)
Arginine (Arg, R)
n = 74 (1.94%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
161 97 121 159 127 180 42 132 85 11 75 50 94 15 125 105
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
43 11 15 75 157 113 8 32 85 85 40 69 98 45 5 61
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
103 118 7 51 70 72 6 20 39 57 54 17 20 52 67 34
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
71 78 21 22 53 60 10 11 14 40 9 0 1 5 0 103
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1003 1000 960 843
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
522 1058 680 1546
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
255 1205 1331 1015 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​L​o​t​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ l​o​t​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.