Viewing data for Catostomus commersonii


Scientific name Catostomus commersonii
Common name White sucker
Maximum lifespan 12.00 years (Catostomus commersonii@AnAge)

Total mtDNA (size: 16625 bases) GC AT G C A T
Base content (bases) 7137 9488 4210 2927 4618 4870
Base content per 1 kb (bases) 429 571 253 176 278 293
Base content (%) 42.9% 57.1%
Total protein-coding genes (size: 11412 bases) GC AT G C A T
Base content (bases) 4831 6581 2981 1850 3375 3206
Base content per 1 kb (bases) 423 577 261 162 296 281
Base content (%) 42.3% 57.7%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1555 bases) GC AT G C A T
Base content (bases) 700 855 383 317 393 462
Base content per 1 kb (bases) 450 550 246 204 253 297
Base content (%) 45.0% 55.0%
Total rRNA-coding genes (size: 2631 bases) GC AT G C A T
Base content (bases) 1221 1410 633 588 544 866
Base content per 1 kb (bases) 464 536 241 223 207 329
Base content (%) 46.4% 53.6%
12S rRNA gene (size: 950 bases) GC AT G C A T
Base content (bases) 471 479 247 224 194 285
Base content per 1 kb (bases) 496 504 260 236 204 300
Base content (%) 49.6% 50.4%
16S rRNA gene (size: 1681 bases) GC AT G C A T
Base content (bases) 750 931 386 364 350 581
Base content per 1 kb (bases) 446 554 230 217 208 346
Base content (%) 44.6% 55.4%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 272 412 173 99 218 194
Base content per 1 kb (bases) 398 602 253 145 319 284
Base content (%) 39.8% 60.2%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 67 101 46 21 43 58
Base content per 1 kb (bases) 399 601 274 125 256 345
Base content (%) 39.9% 60.1%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 644 907 365 279 494 413
Base content per 1 kb (bases) 415 585 235 180 319 266
Base content (%) 41.5% 58.5%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 287 404 168 119 204 200
Base content per 1 kb (bases) 415 585 243 172 295 289
Base content (%) 41.5% 58.5%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 342 443 208 134 232 211
Base content per 1 kb (bases) 436 564 265 171 296 269
Base content (%) 43.6% 56.4%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 500 641 309 191 342 299
Base content per 1 kb (bases) 438 562 271 167 300 262
Base content (%) 43.8% 56.2%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 427 548 255 172 286 262
Base content per 1 kb (bases) 438 562 262 176 293 269
Base content (%) 43.8% 56.2%
ND2 (size: 1047 bases) GC AT G C A T
Base content (bases) 474 573 306 168 297 276
Base content per 1 kb (bases) 453 547 292 160 284 264
Base content (%) 45.3% 54.7%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 147 204 90 57 116 88
Base content per 1 kb (bases) 419 581 256 162 330 251
Base content (%) 41.9% 58.1%
ND4 (size: 1383 bases) GC AT G C A T
Base content (bases) 567 816 351 216 410 406
Base content per 1 kb (bases) 410 590 254 156 296 294
Base content (%) 41.0% 59.0%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 127 170 79 48 92 78
Base content per 1 kb (bases) 428 572 266 162 310 263
Base content (%) 42.8% 57.2%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 753 1086 477 276 561 525
Base content per 1 kb (bases) 409 591 259 150 305 285
Base content (%) 40.9% 59.1%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 229 293 156 73 86 207
Base content per 1 kb (bases) 439 561 299 140 165 397
Base content (%) 43.9% 56.1%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 20 (8.81%)
Serine (Ser, S)
n = 9 (3.96%)
Threonine (Thr, T)
n = 19 (8.37%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 18 (7.93%)
Leucine (Leu, L)
n = 47 (20.7%)
Isoleucine (Ile, I)
n = 22 (9.69%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 18 (7.93%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 5 (2.2%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 5 8 8 5 15 5 11 8 0 3 2 11 2 9 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 6 6 7 1 4 1 5 1 5 3 9 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 5 2 1 1 2 0 2 3 3 2 0 3 3 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 1 1 0 1 0 0 1 5 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 68 66 40
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 61 32 108
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 44 96 70
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWVIFLTIIPTKVLNHISPNEPTPVSAEKHKTESWDWPWQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 4 (7.27%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (7.27%)
Leucine (Leu, L)
n = 4 (7.27%)
Isoleucine (Ile, I)
n = 5 (9.09%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 8 (14.55%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 0 1 1 1 0 1 2 0 0 0 4 0 2 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 2 1 0 0 0 0 0 0 3 4 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 0 1 0 1 2 0 1 0 0 0 1 0 2 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 0 0 1 3 0 0 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
11 15 17 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 18 15 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 13 26 13
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 48 (9.3%)
Serine (Ser, S)
n = 30 (5.81%)
Threonine (Thr, T)
n = 35 (6.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 44 (8.53%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 37 (7.17%)
Methionine (Met, M)
n = 25 (4.84%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 12 17 17 7 13 4 19 8 0 10 7 23 4 25 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 1 12 20 13 3 11 4 27 5 9 8 10 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 17 5 13 2 9 1 1 4 10 8 2 1 9 6 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 9 2 6 8 8 0 1 1 5 1 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
164 104 125 124
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 136 94 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 125 194 161
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 9 (3.93%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 20 (8.73%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 18 (7.86%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 3 7 7 3 9 1 7 6 2 6 3 10 1 7 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 2 5 7 4 1 2 0 6 1 2 5 6 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 0 4 4 4 1 0 4 5 4 1 1 3 2 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 13 2 3 10 3 1 3 0 2 1 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 58 52 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 53 64 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 57 84 70
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 25 (9.62%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 6 4 10 2 13 2 4 9 0 6 3 8 0 12 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 7 6 7 2 1 6 12 2 4 3 5 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 13 1 3 2 6 0 0 3 5 7 1 1 1 0 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 4 2 3 2 0 1 2 2 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 69 53 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 70 55 93
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 69 102 74
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.6%)
Alanine (Ala, A)
n = 36 (9.5%)
Serine (Ser, S)
n = 26 (6.86%)
Threonine (Thr, T)
n = 22 (5.8%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 26 (6.86%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 29 (7.65%)
Methionine (Met, M)
n = 10 (2.64%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 28 (7.39%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 13 8 6 9 24 7 9 6 0 10 2 11 3 14 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 2 6 13 15 2 5 2 14 4 5 5 11 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 5 2 4 10 8 1 2 1 8 5 1 3 6 10 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 2 3 8 4 5 1 2 4 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
105 93 89 93
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 102 74 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 114 136 97
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.86%)
Alanine (Ala, A)
n = 37 (11.42%)
Serine (Ser, S)
n = 20 (6.17%)
Threonine (Thr, T)
n = 15 (4.63%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 21 (6.48%)
Leucine (Leu, L)
n = 62 (19.14%)
Isoleucine (Ile, I)
n = 22 (6.79%)
Methionine (Met, M)
n = 13 (4.01%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 17 (5.25%)
Tyrosine (Tyr, Y)
n = 13 (4.01%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 6 9 6 5 24 10 13 7 0 7 5 7 2 9 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 5 13 17 2 2 3 8 6 6 4 14 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 6 2 4 7 7 0 0 2 12 1 3 4 8 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 6 0 4 6 1 1 1 3 3 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
92 88 71 74
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 94 59 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
43 73 132 77
ND2 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (5.75%)
Alanine (Ala, A)
n = 41 (11.78%)
Serine (Ser, S)
n = 21 (6.03%)
Threonine (Thr, T)
n = 41 (11.78%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 14 (4.02%)
Leucine (Leu, L)
n = 73 (20.98%)
Isoleucine (Ile, I)
n = 22 (6.32%)
Methionine (Met, M)
n = 17 (4.89%)
Proline (Pro, P)
n = 20 (5.75%)
Phenylalanine (Phe, F)
n = 9 (2.59%)
Tyrosine (Tyr, Y)
n = 9 (2.59%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 8 (2.3%)
Glutamine (Gln, Q)
n = 12 (3.45%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 5 (1.44%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 2 9 20 12 21 5 11 9 3 7 3 4 0 3 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 0 11 16 12 2 4 4 10 2 4 7 6 3 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 13 2 5 3 5 1 4 3 5 4 3 4 6 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 1 1 2 5 4 0 2 1 2 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 102 104 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 116 54 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
41 88 118 102
ND3 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (5.75%)
Alanine (Ala, A)
n = 41 (11.78%)
Serine (Ser, S)
n = 21 (6.03%)
Threonine (Thr, T)
n = 41 (11.78%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 14 (4.02%)
Leucine (Leu, L)
n = 73 (20.98%)
Isoleucine (Ile, I)
n = 22 (6.32%)
Methionine (Met, M)
n = 17 (4.89%)
Proline (Pro, P)
n = 20 (5.75%)
Phenylalanine (Phe, F)
n = 9 (2.59%)
Tyrosine (Tyr, Y)
n = 9 (2.59%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 8 (2.3%)
Glutamine (Gln, Q)
n = 12 (3.45%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 5 (1.44%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 2 9 20 12 21 5 11 9 3 7 3 4 0 3 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 0 11 16 12 2 4 4 10 2 4 7 6 3 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 13 2 5 3 5 1 4 3 5 4 3 4 6 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 1 1 2 5 4 0 2 1 2 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 102 104 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 116 54 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
41 88 118 102
ND4 (size: 1383 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (6.3%)
Alanine (Ala, A)
n = 39 (8.48%)
Serine (Ser, S)
n = 30 (6.52%)
Threonine (Thr, T)
n = 36 (7.83%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 18 (3.91%)
Leucine (Leu, L)
n = 84 (18.26%)
Isoleucine (Ile, I)
n = 40 (8.7%)
Methionine (Met, M)
n = 28 (6.09%)
Proline (Pro, P)
n = 28 (6.09%)
Phenylalanine (Phe, F)
n = 18 (3.91%)
Tyrosine (Tyr, Y)
n = 14 (3.04%)
Tryptophan (Trp, W)
n = 20 (4.35%)
Aspartic acid (Asp, D)
n = 3 (0.65%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 11 (2.39%)
Glutamine (Gln, Q)
n = 12 (2.61%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 10 (2.17%)
Arginine (Arg, R)
n = 11 (2.39%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
32 8 14 14 9 34 3 21 11 1 3 2 11 2 13 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
14 2 3 11 13 13 2 4 7 16 2 4 10 13 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 17 2 2 10 10 2 2 4 9 5 5 3 6 5 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 9 3 1 2 8 2 1 1 8 1 0 0 0 1 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 123 131 106
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 127 75 188
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 101 200 116
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 1 (1.02%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 4 4 1 5 1 12 2 1 1 0 2 0 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 3 6 5 0 1 1 4 0 1 0 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 2 1 2 1 3 0 0 3 0 0 0 0 1 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 1 0 1 0 0 0 1 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
27 23 18 31
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 29 14 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 27 46 21
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.9%)
Alanine (Ala, A)
n = 54 (8.82%)
Serine (Ser, S)
n = 49 (8.01%)
Threonine (Thr, T)
n = 54 (8.82%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 32 (5.23%)
Leucine (Leu, L)
n = 93 (15.2%)
Isoleucine (Ile, I)
n = 56 (9.15%)
Methionine (Met, M)
n = 27 (4.41%)
Proline (Pro, P)
n = 26 (4.25%)
Phenylalanine (Phe, F)
n = 40 (6.54%)
Tyrosine (Tyr, Y)
n = 12 (1.96%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 15 (2.45%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 28 (4.58%)
Glutamine (Gln, Q)
n = 19 (3.1%)
Histidine (His, H)
n = 15 (2.45%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 10 (1.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
39 17 19 21 12 29 5 21 17 2 10 9 11 2 22 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 4 2 13 24 16 1 2 11 14 3 13 7 6 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 24 3 5 10 11 6 9 8 7 5 4 5 17 11 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 6 6 8 7 12 8 1 2 4 3 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
143 137 202 131
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 166 122 248
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
56 174 201 182
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (13.29%)
Alanine (Ala, A)
n = 20 (11.56%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 23 (13.29%)
Leucine (Leu, L)
n = 31 (17.92%)
Isoleucine (Ile, I)
n = 5 (2.89%)
Methionine (Met, M)
n = 9 (5.2%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 8 (4.62%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 5 7 2 0 0 12 0 0 10 1 5 7 6 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 12 0 6 2 6 2 4 11 2 1 0 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 0 0 7 1 2 0 2 0 6 2 3 10 0 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 4 3 0 1 0 3 0 0 2 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 19 24 56
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 39 22 76
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 15 40 75
Total protein-coding genes (size: 11434 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 247 (6.48%)
Alanine (Ala, A)
n = 358 (9.4%)
Serine (Ser, S)
n = 247 (6.48%)
Threonine (Thr, T)
n = 282 (7.4%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 244 (6.41%)
Leucine (Leu, L)
n = 621 (16.3%)
Isoleucine (Ile, I)
n = 282 (7.4%)
Methionine (Met, M)
n = 167 (4.38%)
Proline (Pro, P)
n = 213 (5.59%)
Phenylalanine (Phe, F)
n = 225 (5.91%)
Tyrosine (Tyr, Y)
n = 115 (3.02%)
Tryptophan (Trp, W)
n = 121 (3.18%)
Aspartic acid (Asp, D)
n = 78 (2.05%)
Glutamic acid (Glu, E)
n = 105 (2.76%)
Asparagine (Asn, N)
n = 113 (2.97%)
Glutamine (Gln, Q)
n = 97 (2.55%)
Histidine (His, H)
n = 106 (2.78%)
Lysine (Lys, K)
n = 75 (1.97%)
Arginine (Arg, R)
n = 77 (2.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
208 74 104 123 74 195 44 149 86 11 75 37 108 24 132 93
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
63 13 14 91 127 122 18 43 43 124 37 57 61 86 9 54
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
98 109 21 51 54 72 12 23 35 71 44 25 36 63 50 41
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
65 70 35 31 47 53 22 12 13 38 14 0 0 7 3 96
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1032 929 977 872
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
530 1042 699 1539
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
374 929 1419 1088 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​a​t​o​s​t​o​m​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ c​o​m​m​e​r​s​o​n​i​i​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.