Viewing data for Dicentrarchus labrax
| Scientific name | Dicentrarchus labrax |
| Common name | European seabass |
| Maximum lifespan | 15.00 years (Dicentrarchus labrax@AnAge) |
| Total mtDNA (size: 18253 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 8268 | 9985 | 5075 | 3193 | 5019 | 4966 |
| Base content per 1 kb (bases) | 453 | 547 | 278 | 175 | 275 | 272 |
| Base content (%) | 45.3% | 54.7% | ||||
| Total protein-coding genes (size: 11422 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5391 | 6031 | 3539 | 1852 | 3210 | 2821 |
| Base content per 1 kb (bases) | 472 | 528 | 310 | 162 | 281 | 247 |
| Base content (%) | 47.2% | 52.8% | ||||
| D-loop (size: 2109 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 659 | 1450 | 330 | 329 | 727 | 723 |
| Base content per 1 kb (bases) | 312 | 688 | 156 | 156 | 345 | 343 |
| Base content (%) | 31.2% | 68.8% | ||||
| Total tRNA-coding genes (size: 1554 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 709 | 845 | 393 | 316 | 382 | 463 |
| Base content per 1 kb (bases) | 456 | 544 | 253 | 203 | 246 | 298 |
| Base content (%) | 45.6% | 54.4% | ||||
| Total rRNA-coding genes (size: 2658 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1282 | 1376 | 691 | 591 | 577 | 799 |
| Base content per 1 kb (bases) | 482 | 518 | 260 | 222 | 217 | 301 |
| Base content (%) | 48.2% | 51.8% | ||||
| 12S rRNA gene (size: 958 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 475 | 483 | 252 | 223 | 204 | 279 |
| Base content per 1 kb (bases) | 496 | 504 | 263 | 233 | 213 | 291 |
| Base content (%) | 49.6% | 50.4% | ||||
| 16S rRNA gene (size: 1700 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 807 | 893 | 439 | 368 | 373 | 520 |
| Base content per 1 kb (bases) | 475 | 525 | 258 | 216 | 219 | 306 |
| Base content (%) | 47.5% | 52.5% | ||||
| ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 322 | 362 | 225 | 97 | 199 | 163 |
| Base content per 1 kb (bases) | 471 | 529 | 329 | 142 | 291 | 238 |
| Base content (%) | 47.1% | 52.9% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 75 | 93 | 56 | 19 | 47 | 46 |
| Base content per 1 kb (bases) | 446 | 554 | 333 | 113 | 280 | 274 |
| Base content (%) | 44.6% | 55.4% | ||||
| COX1 (size: 1563 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 718 | 845 | 432 | 286 | 469 | 376 |
| Base content per 1 kb (bases) | 459 | 541 | 276 | 183 | 300 | 241 |
| Base content (%) | 45.9% | 54.1% | ||||
| COX2 (size: 691 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 308 | 383 | 181 | 127 | 196 | 187 |
| Base content per 1 kb (bases) | 446 | 554 | 262 | 184 | 284 | 271 |
| Base content (%) | 44.6% | 55.4% | ||||
| COX3 (size: 785 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 387 | 398 | 239 | 148 | 216 | 182 |
| Base content per 1 kb (bases) | 493 | 507 | 304 | 189 | 275 | 232 |
| Base content (%) | 49.3% | 50.7% | ||||
| CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 485 | 656 | 298 | 187 | 374 | 282 |
| Base content per 1 kb (bases) | 425 | 575 | 261 | 164 | 328 | 247 |
| Base content (%) | 42.5% | 57.5% | ||||
| ND1 (size: 975 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 467 | 508 | 317 | 150 | 278 | 230 |
| Base content per 1 kb (bases) | 479 | 521 | 325 | 154 | 285 | 236 |
| Base content (%) | 47.9% | 52.1% | ||||
| ND2 (size: 1045 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 529 | 516 | 394 | 135 | 266 | 250 |
| Base content per 1 kb (bases) | 506 | 494 | 377 | 129 | 255 | 239 |
| Base content (%) | 50.6% | 49.4% | ||||
| ND3 (size: 349 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 187 | 162 | 124 | 63 | 100 | 62 |
| Base content per 1 kb (bases) | 536 | 464 | 355 | 181 | 287 | 178 |
| Base content (%) | 53.6% | 46.4% | ||||
| ND4 (size: 1381 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 669 | 712 | 447 | 222 | 377 | 335 |
| Base content per 1 kb (bases) | 484 | 516 | 324 | 161 | 273 | 243 |
| Base content (%) | 48.4% | 51.6% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 148 | 149 | 101 | 47 | 90 | 59 |
| Base content per 1 kb (bases) | 498 | 502 | 340 | 158 | 303 | 199 |
| Base content (%) | 49.8% | 50.2% | ||||
| ND5 (size: 1842 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 846 | 996 | 556 | 290 | 511 | 485 |
| Base content per 1 kb (bases) | 459 | 541 | 302 | 157 | 277 | 263 |
| Base content (%) | 45.9% | 54.1% | ||||
| ND6 (size: 519 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 255 | 264 | 171 | 84 | 94 | 170 |
| Base content per 1 kb (bases) | 491 | 509 | 329 | 162 | 181 | 328 |
| Base content (%) | 49.1% | 50.9% | ||||
| ATP6 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%) 
Alanine (Ala, A)
n = 21 (9.25%) 
Serine (Ser, S)
n = 8 (3.52%) 
Threonine (Thr, T)
n = 20 (8.81%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 16 (7.05%) 
Leucine (Leu, L)
n = 61 (26.87%) 
Isoleucine (Ile, I)
n = 15 (6.61%) 
Methionine (Met, M)
n = 5 (2.2%) 
Proline (Pro, P)
n = 17 (7.49%) 
Phenylalanine (Phe, F)
n = 13 (5.73%) 
Tyrosine (Tyr, Y)
n = 3 (1.32%) 
Tryptophan (Trp, W)
n = 5 (2.2%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 4 (1.76%) 
Asparagine (Asn, N)
n = 8 (3.52%) 
Glutamine (Gln, Q)
n = 11 (4.85%) 
Histidine (His, H)
n = 3 (1.32%) 
Lysine (Lys, K)
n = 1 (0.44%) 
Arginine (Arg, R)
n = 5 (2.2%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 8 | 5 | 13 | 16 | 14 | 6 | 11 | 9 | 2 | 4 | 5 | 5 | 2 | 7 | 6 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 0 | 0 | 0 | 0 | 13 | 7 | 1 | 0 | 4 | 3 | 3 | 7 | 5 | 5 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 9 | 0 | 1 | 2 | 0 | 0 | 4 | 1 | 0 | 3 | 2 | 1 | 3 | 5 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 4 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 2 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 52 | 85 | 54 | 37 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 61 | 32 | 110 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 20 | 79 | 77 | 52 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLLPTPWFTIFIYAWMVLLAVIPLKILSYVYPNHNYLRGLQKPSEHSWFWPWS* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 2 (3.64%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 2 (3.64%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 8 (14.55%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 7 (12.73%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 4 (7.27%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.82%)
Asparagine (Asn, N)
n = 2 (3.64%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 1 (1.82%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 3 | 1 | 1 | 2 | 1 | 5 | 0 | 0 | 2 | 0 | 0 | 2 | 1 | 0 | 2 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 3 | 2 | 1 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 1 | 0 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 4 | 2 | 0 | 0 | 2 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 0 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 7 | 20 | 12 | 17 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 7 | 15 | 14 | 20 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 5 | 21 | 20 | 10 | ||||||||||||
| COX1 (size: 1563 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.85%)
Alanine (Ala, A)
n = 47 (9.04%)
Serine (Ser, S)
n = 31 (5.96%)
Threonine (Thr, T)
n = 36 (6.92%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 41 (7.88%)
Leucine (Leu, L)
n = 61 (11.73%)
Isoleucine (Ile, I)
n = 43 (8.27%)
Methionine (Met, M)
n = 24 (4.62%)
Proline (Pro, P)
n = 28 (5.38%)
Phenylalanine (Phe, F)
n = 41 (7.88%)
Tyrosine (Tyr, Y)
n = 19 (3.65%)
Tryptophan (Trp, W)
n = 17 (3.27%)
Aspartic acid (Asp, D)
n = 15 (2.88%)
Glutamic acid (Glu, E)
n = 11 (2.12%)
Asparagine (Asn, N)
n = 14 (2.69%)
Glutamine (Gln, Q)
n = 8 (1.54%)
Histidine (His, H)
n = 19 (3.65%)
Lysine (Lys, K)
n = 9 (1.73%)
Arginine (Arg, R)
n = 9 (1.73%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 30 | 13 | 18 | 20 | 13 | 8 | 5 | 14 | 5 | 3 | 9 | 14 | 16 | 2 | 16 | 25 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 1 | 14 | 13 | 17 | 3 | 6 | 17 | 13 | 10 | 8 | 11 | 6 | 3 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 14 | 1 | 5 | 13 | 6 | 1 | 2 | 4 | 6 | 13 | 3 | 1 | 8 | 6 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 15 | 8 | 3 | 3 | 12 | 7 | 2 | 2 | 3 | 2 | 2 | 0 | 1 | 0 | 0 | 14 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 160 | 110 | 133 | 118 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 80 | 136 | 95 | 210 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 46 | 186 | 148 | 141 | ||||||||||||
| COX2 (size: 691 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 14 (6.11%)
Threonine (Thr, T)
n = 11 (4.8%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 19 (8.3%)
Leucine (Leu, L)
n = 31 (13.54%)
Isoleucine (Ile, I)
n = 19 (8.3%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 10 (4.37%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 4 | 8 | 8 | 4 | 8 | 4 | 6 | 8 | 0 | 3 | 7 | 5 | 4 | 5 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 1 | 4 | 8 | 4 | 2 | 3 | 2 | 2 | 2 | 3 | 5 | 4 | 2 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 4 | 1 | 2 | 3 | 5 | 1 | 1 | 2 | 3 | 5 | 2 | 1 | 3 | 1 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 10 | 5 | 4 | 9 | 3 | 1 | 0 | 1 | 4 | 1 | 0 | 0 | 0 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 74 | 62 | 51 | 43 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 54 | 62 | 89 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 28 | 65 | 74 | 63 | ||||||||||||
| COX3 (size: 785 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 23 (8.85%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 30 (11.54%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 26 (10.0%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 6 | 6 | 8 | 8 | 4 | 4 | 6 | 6 | 2 | 6 | 4 | 6 | 1 | 7 | 19 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 2 | 4 | 13 | 6 | 0 | 2 | 9 | 5 | 5 | 4 | 4 | 4 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 10 | 3 | 2 | 4 | 4 | 1 | 0 | 3 | 2 | 8 | 3 | 0 | 0 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 17 | 6 | 4 | 2 | 3 | 2 | 0 | 0 | 0 | 2 | 3 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 66 | 52 | 67 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 68 | 53 | 97 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 29 | 105 | 76 | 51 | ||||||||||||
| CYTB (size: 1141 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 27 (7.12%)
Alanine (Ala, A)
n = 29 (7.65%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 20 (5.28%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 28 (7.39%)
Leucine (Leu, L)
n = 62 (16.36%)
Isoleucine (Ile, I)
n = 29 (7.65%)
Methionine (Met, M)
n = 10 (2.64%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 19 | 10 | 7 | 14 | 11 | 13 | 6 | 14 | 5 | 2 | 11 | 2 | 13 | 2 | 10 | 20 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 2 | 1 | 8 | 11 | 9 | 1 | 5 | 13 | 5 | 4 | 5 | 10 | 4 | 2 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 13 | 1 | 3 | 7 | 10 | 1 | 1 | 1 | 8 | 7 | 3 | 4 | 10 | 8 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 2 | 4 | 7 | 3 | 8 | 1 | 2 | 1 | 4 | 1 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 100 | 93 | 88 | 99 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 52 | 91 | 78 | 159 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 35 | 114 | 116 | 115 | ||||||||||||
| ND1 (size: 975 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 20 (6.17%)
Alanine (Ala, A)
n = 32 (9.88%)
Serine (Ser, S)
n = 18 (5.56%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 16 (4.94%)
Leucine (Leu, L)
n = 67 (20.68%)
Isoleucine (Ile, I)
n = 25 (7.72%)
Methionine (Met, M)
n = 14 (4.32%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 17 (5.25%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 10 | 10 | 12 | 21 | 18 | 2 | 9 | 6 | 0 | 5 | 6 | 4 | 1 | 8 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 5 | 19 | 6 | 2 | 3 | 8 | 4 | 5 | 6 | 12 | 5 | 1 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 3 | 2 | 3 | 8 | 3 | 2 | 0 | 2 | 5 | 7 | 2 | 5 | 2 | 9 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 9 | 2 | 2 | 2 | 7 | 0 | 0 | 3 | 4 | 1 | 0 | 0 | 1 | 0 | 6 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 83 | 95 | 79 | 68 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 92 | 56 | 139 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 29 | 130 | 95 | 71 | ||||||||||||
| ND2 (size: 1045 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.9%)
Alanine (Ala, A)
n = 38 (10.95%)
Serine (Ser, S)
n = 27 (7.78%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 5 (1.44%)
Leucine (Leu, L)
n = 86 (24.78%)
Isoleucine (Ile, I)
n = 17 (4.9%)
Methionine (Met, M)
n = 13 (3.75%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 7 (2.02%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 7 | 11 | 19 | 28 | 20 | 11 | 7 | 13 | 1 | 1 | 3 | 0 | 1 | 4 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 7 | 22 | 7 | 2 | 0 | 9 | 3 | 5 | 7 | 12 | 4 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 24 | 12 | 0 | 4 | 10 | 8 | 1 | 2 | 2 | 3 | 4 | 0 | 1 | 4 | 8 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 1 | 3 | 1 | 2 | 4 | 3 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 67 | 126 | 94 | 61 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 36 | 125 | 54 | 133 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 32 | 143 | 102 | 71 | ||||||||||||
| ND3 (size: 1045 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.9%)
Alanine (Ala, A)
n = 38 (10.95%)
Serine (Ser, S)
n = 27 (7.78%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 5 (1.44%)
Leucine (Leu, L)
n = 86 (24.78%)
Isoleucine (Ile, I)
n = 17 (4.9%)
Methionine (Met, M)
n = 13 (3.75%)
Proline (Pro, P)
n = 23 (6.63%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 7 (2.02%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 7 | 11 | 19 | 28 | 20 | 11 | 7 | 13 | 1 | 1 | 3 | 0 | 1 | 4 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 7 | 22 | 7 | 2 | 0 | 9 | 3 | 5 | 7 | 12 | 4 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 24 | 12 | 0 | 4 | 10 | 8 | 1 | 2 | 2 | 3 | 4 | 0 | 1 | 4 | 8 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 1 | 3 | 1 | 2 | 4 | 3 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 67 | 126 | 94 | 61 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 36 | 125 | 54 | 133 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 32 | 143 | 102 | 71 | ||||||||||||
| ND4 (size: 1381 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (5.66%)
Alanine (Ala, A)
n = 43 (9.37%)
Serine (Ser, S)
n = 29 (6.32%)
Threonine (Thr, T)
n = 39 (8.5%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 16 (3.49%)
Leucine (Leu, L)
n = 98 (21.35%)
Isoleucine (Ile, I)
n = 30 (6.54%)
Methionine (Met, M)
n = 29 (6.32%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 18 (3.92%)
Tyrosine (Tyr, Y)
n = 11 (2.4%)
Tryptophan (Trp, W)
n = 19 (4.14%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 14 (3.05%)
Glutamine (Gln, Q)
n = 9 (1.96%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 8 (1.74%)
Arginine (Arg, R)
n = 11 (2.4%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 16 | 21 | 23 | 25 | 24 | 8 | 17 | 6 | 3 | 2 | 7 | 5 | 2 | 6 | 12 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 1 | 4 | 7 | 21 | 11 | 4 | 4 | 10 | 3 | 9 | 11 | 8 | 7 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 22 | 12 | 2 | 5 | 14 | 3 | 2 | 0 | 5 | 3 | 8 | 8 | 1 | 4 | 10 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 10 | 2 | 1 | 3 | 6 | 2 | 1 | 3 | 4 | 3 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 101 | 139 | 125 | 95 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 66 | 133 | 70 | 191 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 55 | 175 | 140 | 90 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 26 (26.53%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 3 (3.06%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 0 | 2 | 4 | 10 | 7 | 2 | 3 | 3 | 0 | 0 | 0 | 0 | 2 | 4 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 3 | 0 | 2 | 6 | 5 | 1 | 1 | 3 | 0 | 0 | 1 | 1 | 0 | 1 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 3 | 0 | 4 | 1 | 1 | 1 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 24 | 36 | 17 | 22 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 14 | 32 | 13 | 40 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 9 | 33 | 29 | 28 | ||||||||||||
| ND5 (size: 1842 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.38%)
Alanine (Ala, A)
n = 50 (8.16%)
Serine (Ser, S)
n = 43 (7.01%)
Threonine (Thr, T)
n = 59 (9.62%)
Cysteine (Cys, C)
n = 9 (1.47%)
Valine (Val, V)
n = 33 (5.38%)
Leucine (Leu, L)
n = 96 (15.66%)
Isoleucine (Ile, I)
n = 52 (8.48%)
Methionine (Met, M)
n = 29 (4.73%)
Proline (Pro, P)
n = 29 (4.73%)
Phenylalanine (Phe, F)
n = 39 (6.36%)
Tyrosine (Tyr, Y)
n = 10 (1.63%)
Tryptophan (Trp, W)
n = 15 (2.45%)
Aspartic acid (Asp, D)
n = 17 (2.77%)
Glutamic acid (Glu, E)
n = 13 (2.12%)
Asparagine (Asn, N)
n = 22 (3.59%)
Glutamine (Gln, Q)
n = 21 (3.43%)
Histidine (His, H)
n = 12 (1.96%)
Lysine (Lys, K)
n = 18 (2.94%)
Arginine (Arg, R)
n = 13 (2.12%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 24 | 28 | 22 | 19 | 23 | 21 | 9 | 20 | 18 | 3 | 12 | 9 | 10 | 2 | 16 | 23 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 4 | 5 | 8 | 28 | 11 | 3 | 6 | 13 | 7 | 7 | 10 | 13 | 6 | 0 | 16 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 24 | 13 | 6 | 4 | 16 | 7 | 0 | 2 | 14 | 2 | 8 | 3 | 4 | 9 | 13 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 7 | 6 | 4 | 13 | 11 | 7 | 0 | 3 | 9 | 1 | 0 | 0 | 1 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 146 | 147 | 196 | 125 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 86 | 165 | 114 | 249 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 58 | 244 | 175 | 137 | ||||||||||||
| ND6 (size: 519 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.28%)
Alanine (Ala, A)
n = 18 (10.47%)
Serine (Ser, S)
n = 13 (7.56%)
Threonine (Thr, T)
n = 4 (2.33%)
Cysteine (Cys, C)
n = 3 (1.74%)
Valine (Val, V)
n = 23 (13.37%)
Leucine (Leu, L)
n = 21 (12.21%)
Isoleucine (Ile, I)
n = 6 (3.49%)
Methionine (Met, M)
n = 7 (4.07%)
Proline (Pro, P)
n = 5 (2.91%)
Phenylalanine (Phe, F)
n = 14 (8.14%)
Tyrosine (Tyr, Y)
n = 8 (4.65%)
Tryptophan (Trp, W)
n = 4 (2.33%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 6 (3.49%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 2 (1.16%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.91%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 1 | 3 | 3 | 1 | 3 | 2 | 7 | 0 | 2 | 9 | 1 | 11 | 2 | 10 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 2 | 1 | 1 | 4 | 5 | 8 | 1 | 7 | 8 | 12 | 3 | 1 | 1 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 1 | 2 | 4 | 0 | 1 | 2 | 4 | 2 | 4 | 4 | 2 | 5 | 1 | 0 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 1 | 5 | 2 | 0 | 1 | 0 | 0 | 1 | 2 | 2 | 0 | 0 | 1 | 0 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 77 | 22 | 25 | 49 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 46 | 34 | 22 | 71 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 48 | 28 | 47 | 50 | ||||||||||||
| Total protein-coding genes (size: 11440 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 248 (6.51%)
Alanine (Ala, A)
n = 347 (9.11%)
Serine (Ser, S)
n = 240 (6.3%)
Threonine (Thr, T)
n = 289 (7.59%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 222 (5.83%)
Leucine (Leu, L)
n = 674 (17.69%)
Isoleucine (Ile, I)
n = 264 (6.93%)
Methionine (Met, M)
n = 159 (4.17%)
Proline (Pro, P)
n = 219 (5.75%)
Phenylalanine (Phe, F)
n = 239 (6.27%)
Tyrosine (Tyr, Y)
n = 109 (2.86%)
Tryptophan (Trp, W)
n = 119 (3.12%)
Aspartic acid (Asp, D)
n = 80 (2.1%)
Glutamic acid (Glu, E)
n = 101 (2.65%)
Asparagine (Asn, N)
n = 109 (2.86%)
Glutamine (Gln, Q)
n = 102 (2.68%)
Histidine (His, H)
n = 105 (2.76%)
Lysine (Lys, K)
n = 69 (1.81%)
Arginine (Arg, R)
n = 80 (2.1%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 158 | 106 | 117 | 153 | 173 | 149 | 61 | 114 | 83 | 19 | 65 | 60 | 76 | 21 | 97 | 142 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 42 | 13 | 16 | 62 | 167 | 90 | 28 | 31 | 98 | 55 | 64 | 68 | 90 | 49 | 12 | 61 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 113 | 97 | 18 | 40 | 82 | 49 | 12 | 16 | 41 | 37 | 72 | 33 | 24 | 44 | 65 | 25 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 80 | 61 | 40 | 30 | 50 | 52 | 17 | 6 | 19 | 37 | 18 | 0 | 1 | 6 | 0 | 86 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 998 | 1042 | 948 | 823 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 534 | 1038 | 681 | 1558 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 410 | 1374 | 1121 | 906 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​D​i​c​e​n​t​r​a​r​c​h​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ l​a​b​r​a​x​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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